Entry: PS00756

General information about the entry
Entry name SECY_2
Accession number PS00756
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00612
Name and characterization of the entry
DescriptionProtein secY signature 2.
Pattern [LIVMFYW](2)-x-[DE]-x-[LIVM]-[STDNQ]-x(2,3)-[GK]-[LIVMF]-[GST]-[NST]-G- x-[GST]-[LIV]-[LIVFP].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 119 hits in 119 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 119 hits in 119 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 9
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 92.97 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
S61A1_BOVIN (Q5EA68), S61A1_CANFA (P38377), S61A1_DANRE (Q90ZM2), 
S61A1_HUMAN (P61619), S61A1_MOUSE (P61620), S61A1_ONCMY (Q98SN9), 
S61A1_PONAB (Q5R5L5), S61A1_RAT   (P61621), S61A2_BOVIN (Q2KHX4), 
S61A2_DANRE (Q90YL4), S61A2_HUMAN (Q9H9S3), S61A2_MOUSE (Q9JLR1), 
S61A2_ONCMY (Q98SN8), S61A2_PONAB (Q5NVM7), SC61A_BORSA (Q8AY33), 
SC61A_BOVVA (Q8AY31), SC61A_CANAL (Q9P8E3), SC61A_CANGA (Q6FRY3), 
SC61A_DEBHA (Q6BN08), SC61A_DICDI (Q54XK2), SC61A_DISMA (Q7T277), 
SC61A_GADOC (Q8AY32), SC61A_HALRO (Q25147), SC61A_HANAN (Q96TW8), 
SC61A_HARAN (Q7T278), SC61A_HEMAM (Q8AY34), SC61A_KLULA (Q6CPY9), 
SC61A_NEUCR (Q870W0), SC61A_NOTAN (Q8AY35), SC61A_PAGBO (Q8AY36), 
SC61A_SCHPO (P79088), SC61A_YARLI (P78979), SC61A_YEAST (P32915), 
SCY1_ARATH  (Q38885), SECY1_LACKZ (F6CD01), SECY2_LACKZ (F6CFW7), 
SECY_ANTSP  (Q37143), SECY_AQUAE  (O66491), SECY_ARCFU  (O28377), 
SECY_BACHD  (P38375), SECY_BACLD  (Q05207), SECY_BACSU  (P16336), 
SECY_BORBU  (O51451), SECY_BUCAI  (P57571), SECY_BUCAK  (P49976), 
SECY_BUCAP  (Q8K969), SECY_BUCBP  (Q89A85), SECY_CHLMU  (Q9PJN1), 
SECY_CHLPN  (Q9Z7S5), SECY_CHLTR  (P28539), SECY_CORGL  (P38376), 
SECY_CYACA  (P46249), SECY_CYAME  (Q85FU6), SECY_CYAPA  (P25014), 
SECY_ECO57  (P0AGA4), SECY_ECOL6  (P0AGA3), SECY_ECOLI  (P0AGA2), 
SECY_GUITH  (P28527), SECY_HAEIN  (P43804), SECY_HALMA  (P28542), 
SECY_HALSA  (Q9HPB1), SECY_HALVD  (Q977V3), SECY_HELPJ  (Q9ZJS9), 
SECY_HELPY  (O25879), SECY_LACLA  (P58118), SECY_LACLC  (P27148), 
SECY_MAIZE  (O63066), SECY_METJA  (Q60175), SECY_METTH  (O26134), 
SECY_METVA  (P28541), SECY_MICLU  (P33108), SECY_MYCBO  (P0A5Z3), 
SECY_MYCCT  (P10250), SECY_MYCGA  (O52351), SECY_MYCGE  (P47416), 
SECY_MYCLE  (O33006), SECY_MYCPN  (Q59548), SECY_MYCTU  (P0A5Z2), 
SECY_ODOSI  (P49461), SECY_ORYSJ  (Q6ZG25), SECY_PAVLU  (P28540), 
SECY_PEA    (Q9XQU4), SECY_PORPU  (P51297), SECY_PORYE  (Q1XDJ1), 
SECY_PYRAB  (Q9V1V8), SECY_PYRFU  (Q8U019), SECY_PYRHO  (O59442), 
SECY_PYRSA  (P38397), SECY_RICBR  (Q1RHP1), SECY_RICCN  (Q92GY6), 
SECY_RICFE  (Q4UMQ9), SECY_RICPR  (Q9ZCS5), SECY_RICTY  (Q68W98), 
SECY_SHIFL  (P0AGA5), SECY_SPIOL  (P93690), SECY_STAA8  (O08387), 
SECY_STAAC  (Q5HDX8), SECY_STAAM  (Q99S39), SECY_STAAN  (Q7A468), 
SECY_STAAR  (Q6GEK3), SECY_STAAS  (Q6G791), SECY_STAAW  (Q7A086), 
SECY_STACT  (Q05217), SECY_STAEQ  (Q5HM19), SECY_STAES  (Q8CNF3), 
SECY_STRCO  (P46785), SECY_STRGB  (Q59912), SECY_STRGR  (Q59916), 
SECY_STRLI  (P49977), SECY_STRSC  (P43416), SECY_SULAC  (P49978), 
SECY_SULSO  (Q9UX84), SECY_SYNE7  (P0A4H0), SECY_SYNP6  (P0A4H1), 
SECY_SYNY3  (P77964), SECY_THEMA  (Q9X1I9), SECY_THET8  (Q5SHQ8), 
SECY_VAULI  (B7T1W7), SECY_VIBCH  (P78283)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
SC61A_ASHGO (Q752H7), SC61A_PYRSA (P38379), SECY_AERPE  (Q9YDD0), 
SECY_EMIHU  (Q4G351), SECY_HETA2  (B2XTD8), SECY_PSEAE  (Q9HWF5), 
SECY_STRGC  (A8AZK5), SECY_STRSV  (A3CK84), SSH1_YEAST  (P38353)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
SECY_GEOSE  (P28620), SECY_PARDE  (P72179)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1RH5; 1RHZ; 2AKH; 2AKI; 2WWB; 2YXQ; 2YXR; 2ZJS; 2ZQP; 3BO0; 3BO1; 3DIN; 3DKN; 3DL8; 3J01; 3KCR; 3MP7;

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