Entry: PS00756

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General information about the entry

Entry name [info] SECY_2
Accession [info] PS00756
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00612

Name and characterization of the entry

Description [info] Protein secY signature 2.
Pattern [info]
[LIVMFYW](2)-x-[DE]-x-[LIVM]-[STDNQ]-x(2,3)-[GK]-[LIVMF]-[GST]-[NST]-G-
x-[GST]-[LIV]-[LIVFP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 120 in 120 different sequences
Number of true positive hits 120 in 120 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 9
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 93.02 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
120 sequences

S61A1_BOVIN (Q5EA68), S61A1_CANFA (P38377), S61A1_DANRE (Q90ZM2), 
S61A1_HUMAN (P61619), S61A1_MOUSE (P61620), S61A1_ONCMY (Q98SN9), 
S61A1_PONAB (Q5R5L5), S61A1_RAT   (P61621), S61A2_BOVIN (Q2KHX4), 
S61A2_DANRE (Q90YL4), S61A2_HUMAN (Q9H9S3), S61A2_MOUSE (Q9JLR1), 
S61A2_ONCMY (Q98SN8), S61A2_PONAB (Q5NVM7), SC61A_BORSA (Q8AY33), 
SC61A_BOVVA (Q8AY31), SC61A_CANAL (Q9P8E3), SC61A_CANGA (Q6FRY3), 
SC61A_DEBHA (Q6BN08), SC61A_DICDI (Q54XK2), SC61A_DISMA (Q7T277), 
SC61A_GADOC (Q8AY32), SC61A_HALRO (Q25147), SC61A_HANAN (Q96TW8), 
SC61A_HARAN (Q7T278), SC61A_HEMAM (Q8AY34), SC61A_KLULA (Q6CPY9), 
SC61A_NEUCR (Q870W0), SC61A_NOTAN (Q8AY35), SC61A_PAGBO (Q8AY36), 
SC61A_SCHPO (P79088), SC61A_YARLI (P78979), SC61A_YEAST (P32915), 
SCY1_ARATH  (Q38885), SECY1_LACKZ (F6CD01), SECY2_LACKZ (F6CFW7), 
SECY_ANTSP  (Q37143), SECY_AQUAE  (O66491), SECY_ARCFU  (O28377), 
SECY_BACHD  (P38375), SECY_BACLD  (Q05207), SECY_BACSU  (P16336), 
SECY_BORBU  (O51451), SECY_BUCAI  (P57571), SECY_BUCAK  (P49976), 
SECY_BUCAP  (Q8K969), SECY_BUCBP  (Q89A85), SECY_CHLMU  (Q9PJN1), 
SECY_CHLPN  (Q9Z7S5), SECY_CHLTR  (P28539), SECY_CORGL  (P38376), 
SECY_CYACA  (P46249), SECY_CYAME  (Q85FU6), SECY_CYAPA  (P25014), 
SECY_ECO57  (P0AGA4), SECY_ECOL6  (P0AGA3), SECY_ECOLI  (P0AGA2), 
SECY_GUITH  (P28527), SECY_HAEIN  (P43804), SECY_HALMA  (P28542), 
SECY_HALSA  (Q9HPB1), SECY_HALVD  (Q977V3), SECY_HELPJ  (Q9ZJS9), 
SECY_HELPY  (O25879), SECY_LACLA  (P58118), SECY_LACLC  (P27148), 
SECY_MAIZE  (O63066), SECY_METJA  (Q60175), SECY_METTH  (O26134), 
SECY_METVA  (P28541), SECY_MICLU  (P33108), SECY_MYCBO  (P0A5Z3), 
SECY_MYCCT  (P10250), SECY_MYCGA  (O52351), SECY_MYCGE  (P47416), 
SECY_MYCLE  (O33006), SECY_MYCPN  (Q59548), SECY_MYCTO  (P9WGN2), 
SECY_MYCTU  (P9WGN3), SECY_ODOSI  (P49461), SECY_ORYSJ  (Q6ZG25), 
SECY_PAVLU  (P28540), SECY_PEA    (Q9XQU4), SECY_PORPU  (P51297), 
SECY_PYRAB  (Q9V1V8), SECY_PYRFU  (Q8U019), SECY_PYRHO  (O59442), 
SECY_PYRSA  (P38397), SECY_PYRYE  (Q1XDJ1), SECY_RICBR  (Q1RHP1), 
SECY_RICCN  (Q92GY6), SECY_RICFE  (Q4UMQ9), SECY_RICPR  (Q9ZCS5), 
SECY_RICTY  (Q68W98), SECY_SHIFL  (P0AGA5), SECY_SPIOL  (P93690), 
SECY_STAA8  (O08387), SECY_STAAC  (Q5HDX8), SECY_STAAM  (Q99S39), 
SECY_STAAN  (Q7A468), SECY_STAAR  (Q6GEK3), SECY_STAAS  (Q6G791), 
SECY_STAAW  (Q7A086), SECY_STACT  (Q05217), SECY_STAEQ  (Q5HM19), 
SECY_STAES  (Q8CNF3), SECY_STRCO  (P46785), SECY_STRGB  (Q59912), 
SECY_STRGR  (Q59916), SECY_STRLI  (P49977), SECY_STRSC  (P43416), 
SECY_SULAC  (P49978), SECY_SULSO  (Q9UX84), SECY_SYNE7  (P0A4H0), 
SECY_SYNP6  (P0A4H1), SECY_SYNY3  (P77964), SECY_THEMA  (Q9X1I9), 
SECY_THET8  (Q5SHQ8), SECY_VAULI  (B7T1W7), SECY_VIBCH  (P78283)
» More

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

SC61A_ASHGO (Q752H7), SC61A_PYRSA (P38379), SECY_AERPE  (Q9YDD0), 
SECY_EMIHU  (Q4G351), SECY_HETA2  (B2XTD8), SECY_PSEAE  (Q9HWF5), 
SECY_STRGC  (A8AZK5), SECY_STRSV  (A3CK84), SSH1_YEAST  (P38353)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

SECY_GEOSE  (P28620), SECY_PARDE  (P72179)

		
PDB
[Detailed view]
23 PDB

1RH5; 1RHZ; 1VVK; 2AKH; 2AKI; 2WWB; 2YXQ; 2YXR; 2ZJS; 2ZQP; 3BO0; 3BO1; 3DIN; 3DKN; 3DL8; 3J01; 3J45; 3J46; 3KCR; 3MP7; 4CG5; 4CG6; 4CG7
» More

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