Entry: PS00764

General information about the entry
Entry name ENDONUCLEASE_III_1
Accession number PS00764
Entry type PATTERN
Date DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00615
Name and characterization of the entry
DescriptionEndonuclease III iron-sulfur binding region signature.
Pattern C-x(3)-[KRSN]-P-[KRAGL]-C-x(2)-C-x(5)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 26 hits in 26 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 26 hits in 26 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 18
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 59.09 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,iron_sulfur
  • `Interesting' site in the pattern: 6,iron_sulfur
  • `Interesting' site in the pattern: 8,iron_sulfur
  • `Interesting' site in the pattern: 10,iron_sulfur
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
END3_BACSU  (P39788), END3_ECOL6  (P0AB84), END3_ECOLI  (P0AB83), 
END3_HAEIN  (P44319), END3_MYCBO  (P63541), END3_MYCLE  (Q9CB92), 
END3_MYCTU  (P63540), END3_RICPR  (O05956), END3_SYNY3  (P73715), 
END3_THEMA  (Q9WYK0), END3_TREPA  (O83754), GTMR_METTF  (P29588), 
MUTYH_HUMAN (Q9UIF7), MUTYH_MOUSE (Q99P21), MUTYH_RAT   (Q8R5G2), 
MUTY_BUCAI  (P57617), MUTY_BUCAP  (Q8K926), MUTY_BUCBP  (Q89A45), 
MUTY_ECOLI  (P17802), MUTY_HAEIN  (P44320), MUTY_SALTY  (Q05869), 
MYH1_SCHPO  (Q10159), NTH1_CAEEL  (P54137), NTH1_ENCCU  (Q8SRB8), 
NTHL1_BOVIN (Q2KID2), UVEN_MICLC  (P46303)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
DME_ARATH   (Q8LK56), DML2_ARATH  (Q9SR66), DML3_ARATH  (O49498), 
END3_BUCAI  (P57219), END3_BUCAP  (Q8KA16), END3_BUCBP  (Q89AW4), 
END3_METJA  (Q58030), END3_RICCN  (Q92GH4), END3_RICFE  (Q4UK93), 
END3_RICTY  (Q68W04), MUTYH_ARATH (F4JRF4), NTG2_YEAST  (Q08214), 
NTH1_SCHPO  (Q09907), NTHL1_HUMAN (P78549), NTHL1_MOUSE (O35980), 
ROS1_ARATH  (Q9SJQ6), Y1434_METJA (Q58829), YFHQ_BACSU  (O31584)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
MUTY_AERHY  (P46230)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1KEA; 1KG2; 1KG3; 1KG4; 1KG5; 1KG6; 1KG7; 1MUD; 1MUN; 1MUY; 1WEF; 1WEG; 1WEI; 2ABK; 3N5N;

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