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Entry: PS00770

General information about the entry

Entry name [info] AA_TRANSFER_CLASS_4
Accession [info] PS00770
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00618

Name and characterization of the entry

Description [info] Aminotransferases class-IV signature.
Pattern [info]
E-x-[STAGCI]-x(2)-N-[LIVMFAC]-[FY]-x(6,12)-[LIVMFA]-x-T-x(6,8)-[LIVM]-x-
[GS]-[LIVM]-x-[KR].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 75 in 75 different sequences
Number of true positive hits 74 in 74 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 10
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 98.67 %
Recall (true positives / (true positives + false negatives)) 88.10 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
74 sequences

BCA1_SCHPO  (O14370    ), BCA1_YEAST  (P38891    ), BCA2_YEAST  (P47176    ), 
BCAT1_ARATH (Q93Y32    ), BCAT1_HUMAN (P54687    ), BCAT1_MOUSE (P24288    ), 
BCAT1_RAT   (P54690    ), BCAT1_SHEEP (Q9GKM4    ), BCAT2_ARATH (Q9M439    ), 
BCAT2_BOVIN (Q5EA40    ), BCAT2_HUMAN (O15382    ), BCAT2_MOUSE (O35855    ), 
BCAT2_PONAB (Q5REP0    ), BCAT2_RAT   (O35854    ), BCAT3_ARATH (Q9M401    ), 
BCAT5_ARATH (Q9FYA6    ), BCAT6_ARATH (Q9LPM9    ), BCAT7_ARATH (Q9LPM8    ), 
BCAT_CAEEL  (P54688    ), BCAT_DICDI  (Q54N47    ), BCAT_MONBE  (A9UZ24    ), 
BCAT_NEMVE  (A7SLW1    ), DAAA_BACLI  (P54692    ), DAAA_BACSU  (O07597    ), 
DAAA_BACYM  (P19938    ), DAAA_LYSSH  (P54693    ), DAAA_STAAC  (Q5HF24    ), 
DAAA_STAAM  (P63511    ), DAAA_STAAN  (P99090    ), DAAA_STAAR  (Q6GFV1    ), 
DAAA_STAAS  (Q6G8H7    ), DAAA_STAAW  (Q8NW24    ), DAAA_STAEQ  (Q5HNG0    ), 
DAAA_STAES  (Q8CS41    ), DAAA_STAHA  (P54694    ), ILVE1_BACSU (O31461    ), 
ILVE2_BACSU (P39576    ), ILVE_AQUAE  (O67733    ), ILVE_ARCFU  (O29329    ), 
ILVE_ECO57  (P0AB82    ), ILVE_ECOL6  (P0AB81    ), ILVE_ECOLI  (P0AB80    ), 
ILVE_HAEIN  (P54689    ), ILVE_HELPJ  (Q9ZJF1    ), ILVE_HELPY  (O26004    ), 
ILVE_METJA  (Q58414    ), ILVE_METTH  (O27481    ), ILVE_MYCLE  (O32954    ), 
ILVE_MYCS2  (A0R066    ), ILVE_MYCTO  (P9WQ74    ), ILVE_MYCTU  (P9WQ75    ), 
ILVE_PSEAE  (O86428    ), ILVE_RICBR  (Q1RIJ2    ), ILVE_RICCN  (Q92I26    ), 
ILVE_RICFE  (Q4ULR3    ), ILVE_RICPR  (O05970    ), ILVE_RICTY  (Q9AKE5    ), 
ILVE_SALTI  (P0A1A6    ), ILVE_SALTY  (P0A1A5    ), ILVE_STAAC  (Q5HIC1    ), 
ILVE_STAAM  (P63512    ), ILVE_STAAN  (P99138    ), ILVE_STAAR  (Q6GJB4    ), 
ILVE_STAAS  (Q6GBT3    ), ILVE_STAAW  (P63513    ), ILVE_STAEQ  (Q5HRJ8    ), 
ILVE_STAES  (Q8CQ78    ), ILVE_STRCO  (O86505    ), ILVE_SYNY3  (P54691    ), 
ILVE_THEMA  (P74921    ), PABC_BACSU  (P28821    ), PABC_ECOLI  (P28305    ), 
PABC_VIBCH  (Q9KQI0    ), PABC_VIBHA  (Q56693    )
» more

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

BCAL1_ARATH (Q8W0Z7    ), BCAL2_ARATH (Q9ASR4    ), BCAT4_ARATH (Q9LE06    ), 
DAAA_ARATH  (Q8L493    ), DAAA_LISIN  (Q92B90    ), DAAA_LISM4  (G2JZ74    ), 
DAAA_LISMF  (Q71Z49    ), DAAA_LISMO  (P0DJL9    ), PABC_YEAST  (Q03266    ), 
TOXF_COCCA  (Q9Y885    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

BCAT2_PIG   (O19098    )

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

YJLD_BACSU  (P80861    )

		
PDB
[Detailed view]
50 PDB

1A3G; 1DAA; 1EKF; 1EKP; 1EKV; 1ET0; 1I1K; 1I1L; 1I1M; 1I2K; 1I2L; 1IYD; 1IYE; 1KT8; 1KTA; 2A1H; 2ABJ; 2COG; 2COI; 2COJ; 2DAA; 2HDK; 2HG8; 2HGW; 2HGX; 2HHF; 3CSW; 3DAA; 3DTF; 3DTG; 3HT5; 3JZ6; 3LQS; 4DAA; 5BWR; 5BWT; 5BWU; 5BWV; 5BWW; 5BWX; 5CR5; 5HNE; 5I5S; 5I5T; 5I5U; 5I5V; 5I5W; 5I5X; 5I5Y; 5I60
» more

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