Entry: PS00800

General information about the entry
Entry name PECTINESTERASE_1
Accession number PS00800
Entry type PATTERN
Date DEC-1992 (CREATED); JUL-1999 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00413
Name and characterization of the entry
DescriptionPectinesterase signature 1.
Pattern [GSTNP]-x(6)-[FYVHR]-[IVN]-[KEP]-x-G-[STIVKRQ]-Y-[DNQKRMV]-[EP]-x(3)- [LIMVA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 39 hits in 39 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 37 hits in 37 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 60
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 94.87 %
  • Recall (true hits / (true hits + false negatives)): 38.14 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
PME12_ARATH (O48711), PME18_ARATH (Q1JPL7), PME19_ARATH (Q84JX1), 
PME1_ARATH  (Q43867), PME1_CITSI  (O04886), PME1_SOLLC  (P14280), 
PME21_SOLLC (P09607), PME22_ARATH (Q9M9W7), PME22_SOLLC (Q96575), 
PME23_ARATH (Q8GXA1), PME26_ARATH (Q9LUL8), PME2_ARATH  (Q42534), 
PME2_CITSI  (O04887), PME30_ARATH (Q3EAY9), PME32_ARATH (Q9LXK7), 
PME37_ARATH (Q5MFV6), PME3_ARATH  (O49006), PME3_CITSI  (P83948), 
PME3_PHAVU  (Q43111), PME3_SOLLC  (Q96576), PME42_ARATH (Q1PEC0), 
PME43_ARATH (O23447), PME58_ARATH (Q9FJ21), PME59_ARATH (Q9FHN5), 
PME5_ARATH  (Q5MFV8), PME60_ARATH (Q9FHN4), PMEB_DICD3  (Q47474), 
PMEU1_SOLLC (Q43143), PME_ASPAC   (Q12535), PME_ASPTU   (P17872), 
PME_BRACM   (Q42608), PME_BRANA   (P41510), PME_DAUCA   (P83218), 
PME_MEDSA   (Q42920), PME_PETIN   (Q43043), PME_PRUPE   (Q43062), 
YBHC_ECOLI  (P46130)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AL11A_OLEEU (D8VPP5), AL11B_OLEEU (B2VPR8), PME10_ARATH (O64479), 
PME11_ARATH (Q9SIJ9), PME13_ARATH (Q7Y201), PME14_ARATH (Q9ZQA4), 
PME15_ARATH (Q9ZQA3), PME16_ARATH (Q9SKX2), PME17_ARATH (O22149), 
PME1_FICPW  (P83947), PME20_ARATH (O22256), PME21_ARATH (Q8GX86), 
PME24_ARATH (Q9SG77), PME25_ARATH (Q94CB1), PME28_ARATH (Q3E8Z8), 
PME29_ARATH (Q4PSN0), PME31_ARATH (Q9LVQ0), PME33_ARATH (Q9STY3), 
PME34_ARATH (Q9M3B0), PME35_ARATH (Q9LYT5), PME36_ARATH (Q84R10), 
PME38_ARATH (O81320), PME39_ARATH (O81415), PME40_ARATH (O81301), 
PME41_ARATH (Q8RXK7), PME44_ARATH (Q9SMY7), PME45_ARATH (Q9SMY6), 
PME46_ARATH (Q9FF78), PME48_ARATH (Q9LY19), PME49_ARATH (Q9LY18), 
PME50_ARATH (Q9LY17), PME51_ARATH (Q9LXD9), PME53_ARATH (Q8VYZ3), 
PME55_ARATH (Q3E9D3), PME56_ARATH (Q4PT34), PME57_ARATH (Q9MAL0), 
PME61_ARATH (Q9FK05), PME62_ARATH (Q9FM79), PME63_ARATH (Q9FKF3), 
PME64_ARATH (Q8L7Q7), PME66_ARATH (Q4PSQ5), PME67_ARATH (Q9LSP1), 
PME68_ARATH (Q8LPF3), PME6_ARATH  (O49298), PME7_ARATH  (Q9SRX4), 
PME8_ARATH  (O23038), PMEA_ASPFC  (B0Y9F9), PMEA_ASPFN  (B8NPS7), 
PMEA_ASPFU  (Q4WBT5), PMEA_ASPNC  (A2QK82), PMEA_ASPOR  (Q2UBD9), 
PMEA_DICD3  (P0C1A9), PMEA_EMENI  (Q5B7U0), PMEA_ERWCH  (P0C1A8), 
PMEA_NEOFI  (A1DBT4), PMEB_PECSS  (P55743), PME_ACTDE   (P85076), 
PME_RALSL   (P24791), PME_RALSO   (P58601), PPME1_ARATH (Q84WM7)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
PME_CAPAA   (P86075), PME_CAPCH   (P86085)
False positive hits (sequences which do not belong to the set under consideration):
DHK1_STRVN  (P16542), SYE_LEUMM   (Q03ZR1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1GQ8; 1XG2; 3GRH;

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