Entry: PS00800

General information about the entry

Entry name [info] PECTINESTERASE_1
Accession [info] PS00800
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); JUL-1999 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00413

Name and characterization of the entry

Description [info] Pectinesterase signature 1.
Pattern [info]
[GSTNP]-x(6)-[FYVHR]-[IVN]-[KEP]-x-G-[STIVKRQ]-Y-[DNQKRMV]-[EP]-x(3)-
[LIMVA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 39 in 39 different sequences
Number of true positive hits 37 in 37 different sequences
Number of 'unknown' hits 0
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 60
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 94.87 %
Recall (true positives / (true positives + false negatives)) 38.14 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
37 sequences

PME12_ARATH (O48711    ), PME18_ARATH (Q1JPL7    ), PME19_ARATH (Q84JX1    ), 
PME1_ARATH  (Q43867    ), PME1_CITSI  (O04886    ), PME1_SOLLC  (P14280    ), 
PME21_SOLLC (P09607    ), PME22_ARATH (Q9M9W7    ), PME22_SOLLC (Q96575    ), 
PME23_ARATH (Q8GXA1    ), PME26_ARATH (Q9LUL8    ), PME2_ARATH  (Q42534    ), 
PME2_CITSI  (O04887    ), PME30_ARATH (Q3EAY9    ), PME32_ARATH (Q9LXK7    ), 
PME37_ARATH (Q5MFV6    ), PME3_ARATH  (O49006    ), PME3_CITSI  (P83948    ), 
PME3_PHAVU  (Q43111    ), PME3_SOLLC  (Q96576    ), PME42_ARATH (Q1PEC0    ), 
PME43_ARATH (O23447    ), PME58_ARATH (Q9FJ21    ), PME59_ARATH (Q9FHN5    ), 
PME5_ARATH  (Q5MFV8    ), PME60_ARATH (Q9FHN4    ), PMEB_DICD3  (Q47474    ), 
PMEU1_SOLLC (Q43143    ), PME_ASPAC   (Q12535    ), PME_ASPTU   (P17872    ), 
PME_BRACM   (Q42608    ), PME_BRANA   (P41510    ), PME_DAUCA   (P83218    ), 
PME_MEDSA   (Q42920    ), PME_PETIN   (Q43043    ), PME_PRUPE   (Q43062    ), 
YBHC_ECOLI  (P46130    )
» more

UniProtKB/Swiss-Prot
False negative sequences
60 sequences

AL11A_OLEEU (D8VPP5    ), AL11B_OLEEU (B2VPR8    ), PME10_ARATH (O64479    ), 
PME11_ARATH (Q9SIJ9    ), PME13_ARATH (Q7Y201    ), PME14_ARATH (Q9ZQA4    ), 
PME15_ARATH (Q9ZQA3    ), PME16_ARATH (Q9SKX2    ), PME17_ARATH (O22149    ), 
PME1_FICPW  (P83947    ), PME20_ARATH (O22256    ), PME21_ARATH (Q8GX86    ), 
PME24_ARATH (Q9SG77    ), PME25_ARATH (Q94CB1    ), PME28_ARATH (Q3E8Z8    ), 
PME29_ARATH (Q4PSN0    ), PME31_ARATH (Q9LVQ0    ), PME33_ARATH (Q9STY3    ), 
PME34_ARATH (Q9M3B0    ), PME35_ARATH (Q9LYT5    ), PME36_ARATH (Q84R10    ), 
PME38_ARATH (O81320    ), PME39_ARATH (O81415    ), PME40_ARATH (O81301    ), 
PME41_ARATH (Q8RXK7    ), PME44_ARATH (Q9SMY7    ), PME45_ARATH (Q9SMY6    ), 
PME46_ARATH (Q9FF78    ), PME48_ARATH (Q9LY19    ), PME49_ARATH (Q9LY18    ), 
PME50_ARATH (Q9LY17    ), PME51_ARATH (Q9LXD9    ), PME53_ARATH (Q8VYZ3    ), 
PME55_ARATH (Q3E9D3    ), PME56_ARATH (Q4PT34    ), PME57_ARATH (Q9MAL0    ), 
PME61_ARATH (Q9FK05    ), PME62_ARATH (Q9FM79    ), PME63_ARATH (Q9FKF3    ), 
PME64_ARATH (Q8L7Q7    ), PME66_ARATH (Q4PSQ5    ), PME67_ARATH (Q9LSP1    ), 
PME68_ARATH (Q8LPF3    ), PME6_ARATH  (O49298    ), PME7_ARATH  (Q9SRX4    ), 
PME8_ARATH  (O23038    ), PMEA_ASPFC  (B0Y9F9    ), PMEA_ASPFN  (B8NPS7    ), 
PMEA_ASPFU  (Q4WBT5    ), PMEA_ASPNC  (A2QK82    ), PMEA_ASPOR  (Q2UBD9    ), 
PMEA_DICCH  (P0C1A8    ), PMEA_DICD3  (P0C1A9    ), PMEA_EMENI  (Q5B7U0    ), 
PMEA_NEOFI  (A1DBT4    ), PMEB_PECSS  (P55743    ), PME_ACTDE   (P85076    ), 
PME_RALSL   (P24791    ), PME_RALSO   (P58601    ), PPME1_ARATH (Q84WM7    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

PME_CAPAA   (P86075    ), PME_CAPCH   (P86085    )

		
UniProtKB/Swiss-Prot
False positive sequences
2 sequences

DHK1_STRVN  (P16542    ), SYE_LEUMM   (Q03ZR1    )

		
PDB
[Detailed view]
3 PDB

1GQ8; 1XG2; 3GRH

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission