Entry: PS00854

General information about the entry

Entry name [info] PROTEASOME_BETA_1
Accession [info] PS00854
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); JUL-2013 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00668

Name and characterization of the entry

Description [info] Proteasome beta-type subunits signature.
Pattern [info]
[LIVMACFT]-[GSA]-[LIVMF]-x-[FYLVGAC]-x(2)-[GSACFYI]-[LIVMSTACF]-
[LIVMSTAC]-[LIVMFSTAC]-[GACI]-[GSTACV]-[DES]-x(15,16)-[RK]-x(12,13)-G-
x(2)-[GSTA]-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 217 in 217 different sequences
Number of true positive hits 206 in 206 different sequences
Number of 'unknown' hits 0
Number of false positive hits 11 in 11 different sequences
Number of false negative sequences 94
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.93 %
Recall (true positives / (true positives + false negatives)) 68.67 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
206 sequences

PB6LA_SALSA (A7KE01    ), PB6LB_SALSA (A7KII6    ), PSB10_BOVIN (Q3T0T1    ), 
PSB10_HUMAN (P40306    ), PSB10_MOUSE (O35955    ), PSB10_RAT   (Q4KM35    ), 
PSB11_HUMAN (A5LHX3    ), PSB11_MOUSE (Q8BG41    ), PSB1A_CARAU (Q9IB84    ), 
PSB1B_CARAU (Q9IB83    ), PSB1_AERPE  (Q9YES4    ), PSB1_ARATH  (P42742    ), 
PSB1_BOVIN  (Q2TBX6    ), PSB1_CAEEL  (P34286    ), PSB1_CENSY  (A0RU86    ), 
PSB1_DICDI  (Q86A21    ), PSB1_DROME  (P40304    ), PSB1_ENCCU  (Q8SR11    ), 
PSB1_HUMAN  (P20618    ), PSB1_HYPBU  (A2BN24    ), PSB1_IGNH4  (A8AA46    ), 
PSB1_KORCO  (B1L6S7    ), PSB1_METS5  (A4YIE0    ), PSB1_MOUSE  (O09061    ), 
PSB1_NITMS  (A9A4A1    ), PSB1_ORYSJ  (O64464    ), PSB1_PETHY  (O82531    ), 
PSB1_PYRAB  (Q9V247    ), PSB1_PYRAE  (Q8ZYF2    ), PSB1_PYRAR  (A4WH05    ), 
PSB1_PYRCJ  (A3MS44    ), PSB1_PYRFU  (Q8U4C9    ), PSB1_PYRHO  (O57983    ), 
PSB1_PYRIL  (A1RSJ8    ), PSB1_PYRNV  (B1YA36    ), PSB1_RAT    (P18421    ), 
PSB1_SCHPO  (O43063    ), PSB1_STAMF  (A3DN21    ), PSB1_SULIA  (C3N5N4    ), 
PSB1_SULID  (D2PK63    ), PSB1_SULIK  (C4KHB0    ), PSB1_SULIL  (C3MQ16    ), 
PSB1_SULIM  (C3MVD5    ), PSB1_SULIN  (C3NFX2    ), PSB1_SULIY  (C3NE98    ), 
PSB1_SULS9  (D0KRX1    ), PSB1_SULSO  (Q980L4    ), PSB1_SULTO  (Q975U8    ), 
PSB1_THEGJ  (C5A7L1    ), PSB1_THEKO  (Q5JDJ9    ), PSB1_THEON  (B6YSW2    ), 
PSB1_THEPD  (A1RWY6    ), PSB1_TRYBB  (Q9U794    ), PSB1_YEAST  (P38624    ), 
PSB2A_ARATH (O23714    ), PSB2B_ARATH (O24633    ), PSB2_BOVIN  (Q5E9K0    ), 
PSB2_CALMQ  (A8M8R5    ), PSB2_CENSY  (A0RXV1    ), PSB2_DROME  (Q9VQE5    ), 
PSB2_ENCCU  (Q8SQN7    ), PSB2_HUMAN  (P49721    ), PSB2_HYPBU  (A2BN27    ), 
PSB2_KORCO  (B1L6X8    ), PSB2_MOUSE  (Q9R1P3    ), PSB2_NITMS  (A9A2U7    ), 
PSB2_ORYSJ  (Q9LST6    ), PSB2_PYRAB  (Q9V0N9    ), PSB2_PYRAE  (Q8ZST5    ), 
PSB2_PYRAR  (A4WMZ0    ), PSB2_PYRFU  (Q8U125    ), PSB2_PYRHO  (O50110    ), 
PSB2_PYRIL  (A1RTI7    ), PSB2_PYRNV  (B1YDJ0    ), PSB2_RAT    (P40307    ), 
PSB2_SCHPO  (Q09841    ), PSB2_STAMF  (A3DN27    ), PSB2_SULAC  (Q4JAA8    ), 
PSB2_SULIA  (C3MZI0    ), PSB2_SULID  (D2PDG6    ), PSB2_SULIK  (C4KIR0    ), 
PSB2_SULIL  (C3MRE5    ), PSB2_SULIM  (C3MY41    ), PSB2_SULIN  (C3NHF1    ), 
PSB2_SULIY  (C3N7K2    ), PSB2_SULS9  (D0KTH0    ), PSB2_SULSO  (Q9UXF3    ), 
PSB2_SULTO  (Q975D1    ), PSB2_THEGJ  (C5A2D5    ), PSB2_THEON  (B6YXV3    ), 
PSB2_THEPD  (A1RX71    ), PSB2_THESM  (C6A3R1    ), PSB2_YEAST  (P25043    ), 
PSB3A_ARATH (Q9XI05    ), PSB3B_ARATH (O81153    ), PSB3_BOVIN  (P33672    ), 
PSB3_CAEEL  (Q23237    ), PSB3_DROME  (Q9XYN7    ), PSB3_GIAIN  (Q9N9W8    ), 
PSB3_HUMAN  (P49720    ), PSB3_MOUSE  (Q9R1P1    ), PSB3_ONCMY  (O73817    ), 
PSB3_ORYSJ  (Q9LST7    ), PSB3_PICMA  (O65084    ), PSB3_RAT    (P40112    ), 
PSB3_SCHPO  (Q9Y7T8    ), PSB3_TRYBB  (Q9NDA1    ), PSB3_YEAST  (P25451    ), 
PSB4_ARATH  (Q7DLR9    ), PSB4_BOVIN  (Q3T108    ), PSB4_CRYNB  (P0CQ13    ), 
PSB4_CRYNJ  (P0CQ12    ), PSB4_DICDI  (Q556Q0    ), PSB4_DROME  (Q9VNA5    ), 
PSB4_ENCCU  (Q8SRF1    ), PSB4_HUMAN  (P28070    ), PSB4_MOUSE  (P99026    ), 
PSB4_NEUCR  (Q9P6U7    ), PSB4_PICGU  (A5DB52    ), PSB4_PIG    (Q29384    ), 
PSB4_RAT    (P34067    ), PSB4_SCHPO  (Q09720    ), PSB4_XENLA  (P28024    ), 
PSB4_YEAST  (P22141    ), PSB5A_ARATH (O23717    ), PSB5B_ARATH (Q9LIP2    ), 
PSB5_BOVIN  (Q32KL2    ), PSB5_CHICK  (P34065    ), PSB5_HUMAN  (P28074    ), 
PSB5_MOUSE  (O55234    ), PSB5_PONAB  (Q5R8S2    ), PSB5_RAT    (P28075    ), 
PSB5_SCHPO  (P30655    ), PSB5_SPIOL  (O24361    ), PSB5_YEAST  (P30656    ), 
PSB6_ARATH  (Q8LD27    ), PSB6_BOVIN  (Q3MHN0    ), PSB6_DICDI  (Q55GJ6    ), 
PSB6_HUMAN  (P28072    ), PSB6_MOUSE  (Q60692    ), PSB6_RAT    (P28073    ), 
PSB6_SCHPO  (Q9UQY2    ), PSB6_TOBAC  (P93395    ), PSB6_YEAST  (P23724    ), 
PSB7A_ARATH (O23710    ), PSB7B_ARATH (Q7DLS1    ), PSB7_BOVIN  (Q2TBP0    ), 
PSB7_DICDI  (Q54QR2    ), PSB7_ENCCU  (Q8SS01    ), PSB7_HUMAN  (Q99436    ), 
PSB7_MOUSE  (P70195    ), PSB7_PIG    (A1XQU1    ), PSB7_RAT    (Q9JHW0    ), 
PSB7_SCHPO  (Q9USQ9    ), PSB7_YEAST  (P30657    ), PSB8_BOVIN  (Q3T112    ), 
PSB8_CANLF  (Q5W416    ), PSB8_HUMAN  (P28062    ), PSB8_MOUSE  (P28063    ), 
PSB8_RAT    (P28064    ), PSB9_BOVIN  (Q3SZC2    ), PSB9_HUMAN  (P28065    ), 
PSB9_MOUSE  (P28076    ), PSB9_MUSMB  (O35522    ), PSB9_MUSPL  (O35523    ), 
PSB9_MUSSI  (O35524    ), PSB9_MUSTR  (O35521    ), PSB9_ONCMY  (Q9PT26    ), 
PSB9_ORYLA  (Q8UW64    ), PSB9_RAT    (P28077    ), PSB9_SALSA  (Q9DD33    ), 
PSB_ARCFU   (Q9P996    ), PSB_ARCPA   (D2RGT4    ), PSB_FERPA   (D3RX66    ), 
PSB_META3   (A6UT20    ), PSB_METAC   (Q8TJB5    ), PSB_METAR   (Q0W2D6    ), 
PSB_METB6   (A7I841    ), PSB_METBF   (Q46G14    ), PSB_METBU   (Q12YV7    ), 
PSB_METFA   (C7P6N4    ), PSB_METHJ   (Q2FQL8    ), PSB_METJA   (Q58634    ), 
PSB_METKA   (Q8TW10    ), PSB_METLZ   (A2SS78    ), PSB_METM5   (A4FYA5    ), 
PSB_METM6   (A9A788    ), PSB_METM7   (A6VK02    ), PSB_METMA   (Q8PZ04    ), 
PSB_METMJ   (A3CUS9    ), PSB_METMP   (Q6LZD4    ), PSB_METMS   (D5EAS6    ), 
PSB_METPE   (B8GG66    ), PSB_METPS   (D1Z199    ), PSB_METRM   (D3E0A3    ), 
PSB_METS3   (A5UM14    ), PSB_METSF   (D3S8M7    ), PSB_METTE   (Q9P992    ), 
PSB_METTH   (O27270    ), PSB_METTP   (A0B5B1    ), PSB_METVM   (C9REN7    ), 
PSB_METVS   (A6USJ3    ), PSB_NANEQ   (Q74MP5    ), PSB_PICTO   (Q6L181    ), 
PSB_THEAC   (P28061    ), PSB_THEVO   (Q97AZ7    )
» more

UniProtKB/Swiss-Prot
False negative sequences
94 sequences

PSB1_CALMQ  (A8MBW0    ), PSB1_DESK1  (B8D673    ), PSB1_HALMA  (Q5V4S6    ), 
PSB1_HALTV  (D2RQX3    ), PSB1_RHOER  (Q53079    ), PSB1_SALTO  (A4X3P0    ), 
PSB1_STRAW  (Q82JE3    ), PSB1_SULAC  (Q4JAY3    ), PSB1_THECD  (D1A2S9    ), 
PSB1_THESM  (C6A2V9    ), PSB2_AERPE  (Q9YER0    ), PSB2_CAEEL  (P91477    ), 
PSB2_DESK1  (B8D683    ), PSB2_DICDI  (Q55DY7    ), PSB2_HALMA  (Q5V1D5    ), 
PSB2_HALTV  (D2RUI0    ), PSB2_IGNH4  (A8AB58    ), PSB2_METS5  (A4YJ04    ), 
PSB2_PYRCJ  (A3MXQ6    ), PSB2_RHOER  (Q53083    ), PSB2_SALTO  (A4X744    ), 
PSB2_STRAW  (Q828I8    ), PSB2_THECD  (D1A3V2    ), PSB2_THEKO  (Q5JHL8    ), 
PSB2_TRYBB  (Q9NHC6    ), PSB3_DICDI  (Q55D66    ), PSB5_DICDI  (Q54BC8    ), 
PSB6_ENCCU  (Q8SRH6    ), PSB_ACIB4   (B5IEE5    ), PSB_ACIC1   (A0LU50    ), 
PSB_ACIFD   (C7LYP7    ), PSB_ACTMD   (C6WID8    ), PSB_ARTAT   (A1R6Q7    ), 
PSB_ARTS2   (A0JWY6    ), PSB_BEUC1   (C5BVA2    ), PSB_CATAD   (C7PVV2    ), 
PSB_FRAAA   (Q0RLT7    ), PSB_FRASC   (Q2J9Q3    ), PSB_FRASN   (A8LH54    ), 
PSB_GEOOG   (D2S6E2    ), PSB_GORB4   (D0LDT1    ), PSB_HALLT   (B9LTS6    ), 
PSB_HALMD   (C7NVQ4    ), PSB_HALS3   (B0R4C8    ), PSB_HALSA   (Q9HR36    ), 
PSB_HALUD   (C7NQ99    ), PSB_HALVD   (D4GYZ1    ), PSB_HALWD   (Q18GX3    ), 
PSB_JONDD   (C7R403    ), PSB_KINRD   (A6W970    ), PSB_KRIFD   (D2Q4H4    ), 
PSB_METST   (Q2NI68    ), PSB_MYCA1   (A0QFB5    ), PSB_MYCA9   (B1MAI2    ), 
PSB_MYCBO   (Q7TZ13    ), PSB_MYCBP   (A1KKF3    ), PSB_MYCBT   (C1AQ26    ), 
PSB_MYCGI   (A4TB64    ), PSB_MYCLB   (B8ZRF3    ), PSB_MYCLE   (Q49780    ), 
PSB_MYCMM   (B2HFV6    ), PSB_MYCPA   (Q73YW8    ), PSB_MYCS2   (A0QZ47    ), 
PSB_MYCSJ   (A3Q193    ), PSB_MYCSK   (A1UHS7    ), PSB_MYCSS   (Q1B797    ), 
PSB_MYCTA   (A5U4D6    ), PSB_MYCTF   (A5WP84    ), PSB_MYCTK   (C6DPV1    ), 
PSB_MYCTO   (P9WHT8    ), PSB_MYCTU   (P9WHT9    ), PSB_MYCUA   (A0PQT3    ), 
PSB_MYCVP   (A1TAP4    ), PSB_NAKMY   (C8XAQ4    ), PSB_NATMM   (D3SSQ6    ), 
PSB_NATPD   (Q3IPX1    ), PSB_NOCFA   (Q5YUX2    ), PSB_NOCSJ   (A1SK13    ), 
PSB_PSECP   (B8H8L6    ), PSB_RENSM   (A9WSI1    ), PSB_RHOE4   (C0ZZU7    ), 
PSB_RHOJR   (Q0SIF9    ), PSB_RHOOB   (C1ASP7    ), PSB_SACEN   (A4FBY1    ), 
PSB_SACVD   (C7MWV7    ), PSB_SALAI   (A8M2A3    ), PSB_SANKS   (D1BHT9    ), 
PSB_STANL   (D3Q557    ), PSB_STRCO   (Q7AKQ5    ), PSB_STRGG   (B1W306    ), 
PSB_STRRD   (D2ATV1    ), PSB_STRSW   (C9Z4D0    ), PSB_THEFY   (Q47NZ4    ), 
PSB_XYLCX   (D1BS26    )
» more

UniProtKB/Swiss-Prot
False positive sequences
11 sequences

PSA3_SCHPO  (Q09682    ), PSA3_YEAST  (P23638    ), PSA4_BOVIN  (Q3ZCK9    ), 
PSA4_DICDI  (P34119    ), PSA4_DROME  (P18053    ), PSA4_HUMAN  (P25789    ), 
PSA4_MACFA  (Q4R932    ), PSA4_MOUSE  (Q9R1P0    ), PSA4_RAT    (P21670    ), 
PSA4_SPIOL  (P52427    ), PSA4_YEAST  (P40303    )
» more

PDB
[Detailed view]
235 PDB

1FNT; 1G0U; 1G65; 1IRU; 1J2Q; 1JD2; 1PMA; 1RYP; 1YA7; 1YAR; 1YAU; 1Z7Q; 2F16; 2FAK; 2GPL; 2ZCY; 3BDM; 3C91; 3C92; 3D29; 3DY3; 3DY4; 3E47; 3GPJ; 3GPT; 3GPW; 3H4P; 3HYE; 3IPM; 3J9I; 3JRM; 3JSE; 3JTL; 3MG0; 3MG4; 3MG6; 3MG7; 3MG8; 3NZJ; 3NZW; 3NZX; 3OEU; 3OEV; 3OKJ; 3SDI; 3SDK; 3SHJ; 3TDD; 3UN4; 3UN8; 3UNB; 3UNE; 3UNF; 3UNH; 3WXR; 4CR2; 4CR3; 4CR4; 4EU2; 4FZC; 4FZG; 4G4S; 4GK7; 4HNP; 4HRC; 4HRD; 4INR; 4INT; 4INU; 4J70; 4JSQ; 4JSU; 4JT0; 4LQI; 4LTC; 4NNN; 4NNW; 4NO1; 4NO6; 4NO8; 4NO9; 4Q1S; 4QBY; 4QLQ; 4QLS; 4QLT; 4QLU; 4QLV; 4QUX; 4QUY; 4QV0; 4QV1; 4QV3; 4QV4; 4QV5; 4QV6; 4QV7; 4QV8; 4QV9; 4QVL; 4QVM; 4QVN; 4QVP; 4QVQ; 4QVV; 4QVW; 4QVY; 4QW0; 4QW1; 4QW3; 4QW4; 4QW5; 4QW6; 4QW7; 4QWF; 4QWG; 4QWI; 4QWJ; 4QWK; 4QWL; 4QWR; 4QWS; 4QWU; 4QWX; 4QXJ; 4QZ0; 4QZ1; 4QZ2; 4QZ3; 4QZ4; 4QZ5; 4QZ6; 4QZ7; 4QZW; 4QZX; 4QZZ; 4R00; 4R02; 4R17; 4R18; 4R3O; 4R67; 4RUR; 4X6Z; 4Y69; 4Y6A; 4Y6V; 4Y6Z; 4Y70; 4Y74; 4Y75; 4Y77; 4Y78; 4Y7W; 4Y7X; 4Y7Y; 4Y80; 4Y81; 4Y82; 4Y84; 4Y8G; 4Y8H; 4Y8I; 4Y8J; 4Y8K; 4Y8L; 4Y8M; 4Y8N; 4Y8O; 4Y8P; 4Y8Q; 4Y8R; 4Y8S; 4Y8T; 4Y8U; 4Y9Y; 4Y9Z; 4YA0; 4YA1; 4YA2; 4YA3; 4YA4; 4YA5; 4YA7; 4YA9; 4Z1L; 4ZZG; 5A0Q; 5A5B; 5AHJ; 5BOU; 5BXL; 5BXN; 5CGF; 5CGG; 5CGH; 5CGI; 5CZ4; 5CZ5; 5CZ6; 5CZ7; 5CZ8; 5CZ9; 5CZA; 5D0S; 5D0T; 5D0V; 5D0W; 5D0X; 5D0Z; 5DKI; 5DKJ; 5FG7; 5FG9; 5FGA; 5FGD; 5FGE; 5FGF; 5FGG; 5FGH; 5FGI; 5FHS; 5GJQ; 5JHR; 5JHS; 5LE5; 5LEX; 5LEY; 5LEZ; 5LF0; 5LF1; 5LF3; 5LF4; 5LF6; 5LF7
» more

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