Entry: PS00858

General information about the entry
Entry name PREPHENATE_DEHYDR_2
Accession number PS00858
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00671
Name and characterization of the entry
DescriptionPrephenate dehydratase signature 2.
Pattern [LIVM]-[ST]-[KR]-[LIVMF]-E-[ST]-R-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 38 hits in 38 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 36 hits in 36 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 94.74 %
  • Recall (true hits / (true hits + false negatives)): 83.72 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AROD1_ARATH (Q9SA96), AROD2_ARATH (Q9SSE7), AROD3_ARATH (Q9ZUY3), 
AROD4_ARATH (O22241), AROD5_ARATH (Q9FNJ8), AROD6_ARATH (Q9SGD6), 
PHEA_AQUAE  (O67085), PHEA_BACSU  (P21203), PHEA_CORGL  (P10341), 
PHEA_ECO57  (P0A9J9), PHEA_ECOLI  (P0A9J8), PHEA_ENTAG  (Q02286), 
PHEA_HAEIN  (P43900), PHEA_LACLA  (Q9CEU2), PHEA_LACLM  (P43909), 
PHEA_METJA  (Q58054), PHEA_MYCA1  (A0Q994), PHEA_MYCA9  (B1MEG8), 
PHEA_MYCBO  (Q7TVJ6), PHEA_MYCBP  (A1KQH3), PHEA_MYCLB  (B8ZTU2), 
PHEA_MYCLE  (Q9CDC4), PHEA_MYCMM  (B2HMM5), PHEA_MYCPA  (Q745J2), 
PHEA_MYCS2  (A0R643), PHEA_MYCSJ  (A3Q7Q1), PHEA_MYCSK  (A1UNA3), 
PHEA_MYCSS  (Q1B1U6), PHEA_MYCTA  (A5U9G7), PHEA_MYCTU  (P96240), 
PHEA_MYCUA  (A0PX17), PHEA_MYCVP  (A1TGX7), PHEA_NEIG1  (Q9ZHY3), 
PHEA_PSEAE  (Q9HZ67), PHEA_PSEST  (P27603), PHEA_SHIFL  (P0A9K0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PHA2_SCHPO  (O14361), PHA2_YEAST  (P32452), PHEA_AMYME  (Q44104), 
PHEA_BUCAI  (P57472), PHEA_BUCAP  (Q8K9F8), PHEA_BUCBP  (Q89AE5), 
PHEA_MYCGI  (A4T6G3)
False positive hits (sequences which do not belong to the set under consideration):
DAAF1_AEDAE (Q16RY9), PH4H_DICDI  (Q54XS1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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