Home ScanProsite ProRule Documents Downloads Links Funding
Entry: PS00858
General information about the entry
Entry namePREPHENATE_DEHYDR_2
Accession numberPS00858
Entry typePATTERN
DateOCT-1993 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00671
Name and characterization of the entry
DescriptionPrephenate dehydratase signature 2.
Pattern[LIVM]-[ST]-[KR]-[LIVMF]-E-[ST]-R-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 38 hits in 38 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 36 hits in 36 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 94.74 %
  • Recall (true hits / (true hits + false negatives)): 83.72 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
AROD1_ARATH (Q9SA96), AROD2_ARATH (Q9SSE7), AROD3_ARATH (Q9ZUY3), 
AROD4_ARATH (O22241), AROD5_ARATH (Q9FNJ8), AROD6_ARATH (Q9SGD6), 
PHEA_AQUAE  (O67085), PHEA_BACSU  (P21203), PHEA_CORGL  (P10341), 
PHEA_ECO57  (P0A9J9), PHEA_ECOLI  (P0A9J8), PHEA_ENTAG  (Q02286), 
PHEA_HAEIN  (P43900), PHEA_LACLA  (Q9CEU2), PHEA_LACLM  (P43909), 
PHEA_METJA  (Q58054), PHEA_MYCA1  (A0Q994), PHEA_MYCA9  (B1MEG8), 
PHEA_MYCBO  (Q7TVJ6), PHEA_MYCBP  (A1KQH3), PHEA_MYCLB  (B8ZTU2), 
PHEA_MYCLE  (Q9CDC4), PHEA_MYCMM  (B2HMM5), PHEA_MYCPA  (Q745J2), 
PHEA_MYCS2  (A0R643), PHEA_MYCSJ  (A3Q7Q1), PHEA_MYCSK  (A1UNA3), 
PHEA_MYCSS  (Q1B1U6), PHEA_MYCTA  (A5U9G7), PHEA_MYCTU  (P96240), 
PHEA_MYCUA  (A0PX17), PHEA_MYCVP  (A1TGX7), PHEA_NEIG1  (Q9ZHY3), 
PHEA_PSEAE  (Q9HZ67), PHEA_PSEST  (P27603), PHEA_SHIFL  (P0A9K0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PHA2_SCHPO  (O14361), PHA2_YEAST  (P32452), PHEA_AMYME  (Q44104), 
PHEA_BUCAI  (P57472), PHEA_BUCAP  (Q8K9F8), PHEA_BUCBP  (Q89AE5), 
PHEA_MYCGI  (A4T6G3)
False positive hits (sequences which do not belong to the set under consideration):
DAAF1_AEDAE (Q16RY9), PH4H_DICDI  (Q54XS1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or