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Entry: PS00862
General information about the entry
Entry nameOX2_COVAL_FAD
Accession numberPS00862
Entry typePATTERN
DateOCT-1993 (CREATED); APR-2006 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00674
Name and characterization of the entry
DescriptionOxygen oxidoreductases covalent FAD-binding site.
PatternP-x(7)-{L}-x(2)-[DE]-[LIVM]-x(3)-[LIVM]-x(9,12)-[LIVM]-x(3)-[GSA]- [GSTCHRQ]-G-H.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 29 hits in 29 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 28 hits in 28 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 13
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 96.55 %
  • Recall (true hits / (true hits + false negatives)): 68.29 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 15,FAD_binding
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ALO_ASHGO   (Q752Y3), ALO_CANAL   (O93852), ALO_CANGA   (Q6FS20), 
ALO_DEBHA   (Q6BZA0), ALO_KLULA   (Q6CSY3), ALO_NEUCR   (Q7SGY1), 
ALO_YEAST   (P54783), CKX1_ARATH  (O22213), CKX1_MAIZE  (Q9T0N8), 
CKX1_ORYSJ  (Q0JQ12), CKX2_ARATH  (Q9FUJ3), CKX3_ARATH  (Q9LTS3), 
CKX4_ORYSJ  (Q5JLP4), CKX5_ARATH  (Q67YU0), CKX5_ORYSJ  (Q5ZAY9), 
CKX6_ORYSJ  (Q6YW51), CKX7_ORYSJ  (Q6YW50), CKX9_ORYSJ  (Q75K78), 
FAS5_RHOFA  (P46377), GGLO_BOVIN  (Q3ZC33), GGLO_MOUSE  (P58710), 
GGLO_PIG    (Q8HXW0), GGLO_RAT    (P10867), GGLO_SCYTO  (Q90YK3), 
HDNO_ARTOX  (P08159), MCRA_STRLA  (P43485), RETO_ESCCA  (P30986), 
RETO_PAPSO  (P93479)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ALO_SCHPO   (Q9HDX8), ALO_YARLI   (Q6CG88), CKX10_ORYSJ (Q5Z620), 
CKX11_ORYSJ (Q6Z955), CKX2_ORYSJ  (Q4ADV8), CKX3_ORYSJ  (Q8LNV6), 
CKX4_ARATH  (Q9FUJ2), CKX6_ARATH  (Q9LY71), CKX7_ARATH  (Q9FUJ1), 
CKX8_ORYSI  (A2XVN3), CKX8_ORYSJ  (A3AVP1), XYOA_STRCO  (Q9ZBU1), 
XYOA_STRSI  (Q9KX73)
False positive hits (sequences which do not belong to the set under consideration):
ATG2A_HUMAN (Q2TAZ0)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1W1O; 1W1Q; 1W1R; 1W1S; 2QKN; 2QPM; 3BW7; 3C0P; 3D2D; 3D2H; 3D2J; 3DQ0; 3FW8; 3FW9; 3FWA; 3GSY; 3KJM;

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