Entry: PS00872

General information about the entry
Entry name NA_GALACTOSIDE_SYMP
Accession number PS00872
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00680
Name and characterization of the entry
DescriptionSodium:galactoside symporter family signature.
Pattern [DG]-x(3)-G-x(3)-[DN]-x(6,8)-[GA]-[KRHQ]-[FSAR]-[KRL]-[PT]-[FYW]- [LIVMWQ]-[LIV]-x(0,1)-[GAFV]-[GSTA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 23 hits in 23 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 23 hits in 23 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 95.83 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
GUTA_BACSU  (O34368), LACP_STAXY  (O33814), LACY_LACDA  (P22733), 
LACY_LACHE  (Q7WTB2), LACY_LEULA  (Q48624), LACY_STRTR  (P23936), 
MELB_ECOLI  (P02921), MELB_ENTAE  (O07366), MELB_KLEPN  (Q02581), 
MELB_SALTY  (P30878), RAFP_PEDPE  (P43466), UIDB2_ECOLI (P0CE45), 
UIDB_ECOLI  (P0CE44), XYLP_LACPE  (P96792), Y1374_SYNY3 (P74168), 
YAGG_ECOLI  (P75683), YICJ_ECOLI  (P31435), YIHO_ECOLI  (P32136), 
YIHO_SALTY  (Q9L7R4), YIHP_ECOLI  (P32137), YIHP_SALTY  (Q9L7R5), 
YJMB_BACSU  (O34961), YNAJ_BACSU  (P94488)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
YCR3_ESCVU  (Q01334)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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