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Entry: PS00875

General information about the entry

Entry name [info] T2SP_D
Accession [info] PS00875
Entry type [info] PATTERN
Date [info] 01-OCT-1993 CREATED; 01-DEC-2004 DATA UPDATE; 20-DEC-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00683

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein D signature.
Pattern [info]
[GRH]-[DEQKG]-[STVM]-[LIVMA](3)-[GA]-G-[LIVMFY]-x(11)-[LIVM]-P-
[LIVMFYWGS]-[LIVMF]-[GSAE]-x-[LIVMS]-P-[LIVMFYW]-[LIVMFYWS]-x(2,3)-[LV]-
[FK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_12 which contains 556'388 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.97 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

COME_HAEIN  (P31772    ), G4P_BPF1    (P03666    ), G4P_BPFD    (P03664    ), 
G4P_BPI22   (P15420    ), G4P_BPIF1   (O80300    ), G4P_BPIKE   (P03667    ), 
G4P_BPM13   (P03665    ), GSPD1_DICCH (P31700    ), GSPD2_DICD3 (Q01565    ), 
GSPD_AERHY  (P31780    ), GSPD_AERSA  (P45778    ), GSPD_ECOLI  (P45758    ), 
GSPD_KLEPN  (P15644    ), GSPD_PECCC  (P31701    ), GSPD_PSEAE  (P35818    ), 
GSPD_VIBCH  (P45779    ), GSPD_XANCP  (P29041    ), HOFQ_ECOLI  (P34749    ), 
HRPA1_XANEU (P80151    ), HRPA_RALSO  (Q52498    ), HRPH_PSESY  (Q01723    ), 
INVG_SALTY  (P35672    ), MXID_SHIFL  (Q04641    ), MXID_SHISO  (Q55293    ), 
PILQ_NEIG1  (Q5FAD2    ), PILQ_NEIGO  (P35819    ), PILQ_NEIMA  (Q9JVW4    ), 
PILQ_NEIMB  (Q70M91    ), PILQ_NEIMH  (Q9ZHF3    ), PILQ_PSEAE  (P34750    ), 
SPIA_SALT1  (D0ZWR9    ), YSCC_YEREN  (Q01244    )
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

DR774_DEIRA (Q9RW95    )

		
PDB
[Detailed view]
5 PDB

5TCQ; 5WLN; 5WQ7; 5WQ8; 5WQ9

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