Entry: PS00875

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General information about the entry

Entry name [info] T2SP_D
Accession [info] PS00875
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00683

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein D signature.
Pattern [info]
[GRH]-[DEQKG]-[STVM]-[LIVMA](3)-[GA]-G-[LIVMFY]-x(11)-[LIVM]-P-
[LIVMFYWGS]-[LIVMF]-[GSAE]-x-[LIVMS]-P-[LIVMFYW]-[LIVMFYWS]-x(2,3)-[LV]-
[FK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

COME_HAEIN  (P31772), G4P_BPF1    (P03666), G4P_BPFD    (P03664), 
G4P_BPI22   (P15420), G4P_BPIF1   (O80300), G4P_BPIKE   (P03667), 
G4P_BPM13   (P03665), GSPD1_DICCH (P31700), GSPD2_DICD3 (Q01565), 
GSPD_AERHY  (P31780), GSPD_AERSA  (P45778), GSPD_ECOLI  (P45758), 
GSPD_KLEPN  (P15644), GSPD_PECCC  (P31701), GSPD_PSEAE  (P35818), 
GSPD_VIBCH  (P45779), GSPD_XANCP  (P29041), HOFQ_ECOLI  (P34749), 
HRPA1_XANEU (P80151), HRPA_RALSO  (Q52498), HRPH_PSESY  (Q01723), 
INVG_SALTY  (P35672), MXID_SHIFL  (Q04641), MXID_SHISO  (Q55293), 
PILQ_NEIG1  (Q5FAD2), PILQ_NEIGO  (P35819), PILQ_NEIMA  (Q9JVW4), 
PILQ_NEIMB  (Q70M91), PILQ_NEIMH  (Q9ZHF3), PILQ_PSEAE  (P34750), 
SPIA_SALT1  (D0ZWR9), YSCC_YEREN  (Q01244)
» More


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