Entry: PS00875

General information about the entry
Entry name T2SP_D
Accession number PS00875
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00683
Name and characterization of the entry
DescriptionBacterial type II secretion system protein D signature.
Pattern [GRH]-[DEQKG]-[STVM]-[LIVMA](3)-[GA]-G-[LIVMFY]-x(11)-[LIVM]-P- [LIVMFYWGS]-[LIVMF]-[GSAE]-x-[LIVMS]-P-[LIVMFYW]-[LIVMFYWS]-x(2,3)-[LV]- [FK].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 32 hits in 32 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 32 hits in 32 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Bacteriophages, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
COME_HAEIN  (P31772), G4P_BPF1    (P03666), G4P_BPFD    (P03664), 
G4P_BPI22   (P15420), G4P_BPIF1   (O80300), G4P_BPIKE   (P03667), 
G4P_BPM13   (P03665), GSPD1_ERWCH (P31700), GSPD2_DICD3 (Q01565), 
GSPD_AERHY  (P31780), GSPD_AERSA  (P45778), GSPD_ECOLI  (P45758), 
GSPD_KLEPN  (P15644), GSPD_PECCC  (P31701), GSPD_PSEAE  (P35818), 
GSPD_VIBCH  (P45779), GSPD_XANCP  (P29041), HOFQ_ECOLI  (P34749), 
HRPA1_XANEU (P80151), HRPA_RALSO  (Q52498), HRPH_PSESY  (Q01723), 
INVG_SALTY  (P35672), MXID_SHIFL  (Q04641), MXID_SHISO  (Q55293), 
PILQ_NEIG1  (Q5FAD2), PILQ_NEIGO  (P35819), PILQ_NEIMA  (Q9JVW4), 
PILQ_NEIMB  (Q70M91), PILQ_NEIMH  (Q9ZHF3), PILQ_PSEAE  (P34750), 
SPIA_SALT1  (D0ZWR9), YSCC_YEREN  (Q01244)
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