Entry: PS00875

General information about the entry

Entry name [info] T2SP_D
Accession [info] PS00875
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00683

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein D signature.
Pattern [info]
[GRH]-[DEQKG]-[STVM]-[LIVMA](3)-[GA]-G-[LIVMFY]-x(11)-[LIVM]-P-
[LIVMFYWGS]-[LIVMF]-[GSAE]-x-[LIVMS]-P-[LIVMFYW]-[LIVMFYWS]-x(2,3)-[LV]-
[FK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 32 in 32 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.97 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
32 sequences

COME_HAEIN  (P31772), G4P_BPF1    (P03666), G4P_BPFD    (P03664), 
G4P_BPI22   (P15420), G4P_BPIF1   (O80300), G4P_BPIKE   (P03667), 
G4P_BPM13   (P03665), GSPD1_DICCH (P31700), GSPD2_DICD3 (Q01565), 
GSPD_AERHY  (P31780), GSPD_AERSA  (P45778), GSPD_ECOLI  (P45758), 
GSPD_KLEPN  (P15644), GSPD_PECCC  (P31701), GSPD_PSEAE  (P35818), 
GSPD_VIBCH  (P45779), GSPD_XANCP  (P29041), HOFQ_ECOLI  (P34749), 
HRPA1_XANEU (P80151), HRPA_RALSO  (Q52498), HRPH_PSESY  (Q01723), 
INVG_SALTY  (P35672), MXID_SHIFL  (Q04641), MXID_SHISO  (Q55293), 
PILQ_NEIG1  (Q5FAD2), PILQ_NEIGO  (P35819), PILQ_NEIMA  (Q9JVW4), 
PILQ_NEIMB  (Q70M91), PILQ_NEIMH  (Q9ZHF3), PILQ_PSEAE  (P34750), 
SPIA_SALT1  (D0ZWR9), YSCC_YEREN  (Q01244)
» More

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

DR774_DEIRA (Q9RW95)

		

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission