Entry: PS00878

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General information about the entry

Entry name [info] ODR_DC_2_1
Accession [info] PS00878
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); NOV-1997 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
Pattern [info]
[FY]-[PA]-x-K-[SACV]-[NHCLFW]-x(4)-[LIVMF]-[LIVMTA]-x(2)-[LIVMA]-x(3)-
[GTE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 146 in 146 different sequences
Number of true positive hits 124 in 124 different sequences
Number of 'unknown' hits
Number of false positive hits 22 in 22 different sequences
Number of false negative sequences 58
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 84.93 %
Recall (true positives / (true positives + false negatives)) 68.13 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
124 sequences

ADC2_ORYSJ  (Q7XRA1), AZIN2_HUMAN (Q96A70), DCDA1_ARATH (Q949X7), 
DCDA2_ARATH (Q94A94), DCDA_AQUAE  (O67262), DCDA_ARCFU  (O29458), 
DCDA_BACMT  (P41023), DCDA_BACSU  (P23630), DCDA_BACTN  (Q8A800), 
DCDA_COREF  (Q8RQM6), DCDA_CORGL  (P09890), DCDA_ECOLI  (P00861), 
DCDA_ECOLW  (E0IWI3), DCDA_FRATH  (Q2A5D5), DCDA_HAEIN  (P44316), 
DCDA_HELPJ  (Q9ZME5), DCDA_HELPX  (B4XMC6), DCDA_HELPY  (P56129), 
DCDA_METJA  (Q58497), DCDA_METTH  (O27390), DCDA_MYCBO  (P0A5M5), 
DCDA_MYCLE  (Q50140), DCDA_MYCS2  (Q9X5M1), DCDA_MYCTO  (P9WIU6), 
DCDA_MYCTU  (P9WIU7), DCDA_ORYSJ  (Q6ZG77), DCDA_PSEAE  (P19572), 
DCDA_PSEFL  (O05321), DCDA_STRCO  (Q9ZBH5), DCDA_SYNY3  (Q55484), 
DCDA_THEMA  (Q9X1K5), DCDA_VIBCH  (Q9KVL7), DCLO_SELRU  (O50657), 
DCOR1_DROME (P40807), DCOR1_XENLA (P27120), DCOR2_DROME (P40808), 
DCOR2_XENLA (Q9I8S4), DCOR_BOVIN  (P27117), DCOR_CAEEL  (P41931), 
DCOR_CANAL  (P78599), DCOR_CAPAN  (Q8S3N2), DCOR_CHICK  (P27118), 
DCOR_CRIGR  (P14019), DCOR_DATST  (P50134), DCOR_DICDI  (Q54UF3), 
DCOR_HUMAN  (P11926), DCOR_LEIDO  (P27116), DCOR_MOUSE  (P00860), 
DCOR_MUSPA  (P27119), DCOR_NEUCR  (P27121), DCOR_PANRE  (P49725), 
DCOR_RAT    (P09057), DCOR_SCHPO  (Q9UQW9), DCOR_SOLLC  (O22616), 
DCOR_TRYBB  (P07805), DCOR_YEAST  (P08432), SPE1_ARATH  (Q9SI64), 
SPE1_AVESA  (P22220), SPE1_BRAJU  (O82475), SPE1_DIACA  (Q96412), 
SPE1_ORYSJ  (Q9SNN0), SPE1_PEA    (Q43075), SPE1_SOLLC  (P49726), 
SPE1_SOYBN  (Q39827), SPE2_ARATH  (O23141), SPE2_THECC  (O81160), 
SPEA1_SYNY3 (P74576), SPEA2_SYNY3 (P72587), SPEA_ALKEH  (Q0ACK8), 
SPEA_BACFN  (Q5LIQ3), SPEA_BACFR  (Q64ZT8), SPEA_BACTN  (Q8A2B1), 
SPEA_BACV8  (A6L012), SPEA_DEIRA  (Q9RXR4), SPEA_ECO57  (Q8XCX9), 
SPEA_ECO5E  (B5YQD6), SPEA_ECOL6  (Q8FE34), SPEA_ECOLI  (P21170), 
SPEA_ECOSM  (B1LDE8), SPEA_GEOBB  (B5EIW4), SPEA_GEODF  (B9M6H6), 
SPEA_GEOLS  (B3EAF3), SPEA_GEOMG  (Q39X78), SPEA_GEOSL  (A0A4W3), 
SPEA_GEOSM  (C6E3V4), SPEA_GEOUR  (A5GB52), SPEA_GLOVI  (Q7NE10), 
SPEA_HAMD5  (C4K6F4), SPEA_KLEP3  (B5XUB1), SPEA_MARHV  (A1TY02), 
SPEA_NEIMA  (Q9JT25), SPEA_NEIMB  (Q9K0U3), SPEA_NOSS1  (Q8YRP3), 
SPEA_PASMU  (Q9CL60), SPEA_PELPD  (A1AS90), SPEA_PHOLL  (Q7N121), 
SPEA_PROM0  (A3PA96), SPEA_PROM2  (A8G243), SPEA_PROM3  (A2CDK1), 
SPEA_PROM5  (A2BU00), SPEA_PROM9  (Q31DD8), SPEA_PROMA  (Q7VEG4), 
SPEA_PROMH  (B4F1A4), SPEA_PROMM  (Q7TUJ9), SPEA_PROMP  (Q7V3M9), 
SPEA_PROMS  (A2BNH3), SPEA_PSEAE  (Q9HUX1), SPEA_RHOBA  (Q7UTS2), 
SPEA_SALA4  (B5F5L1), SPEA_SALCH  (Q57K30), SPEA_SALDC  (B5FUJ7), 
SPEA_SALHS  (B4THH1), SPEA_SALNS  (B4T5J3), SPEA_SALPB  (A9N4N1), 
SPEA_SALSV  (B4TV55), SPEA_SALTI  (P60658), SPEA_SALTY  (P60659), 
SPEA_SHIF8  (Q0T0V3), SPEA_SHIFL  (Q83Q93), SPEA_SYNPX  (Q7U3S0), 
SPEA_SYNR3  (A5GWM2), SPEA_THEEB  (Q8DHY6), SPEA_YERPE  (Q8ZHG8), 
TABA_PSESZ  (P31851)
» More

UniProtKB/Swiss-Prot
False negative sequences
58 sequences

AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), 
AZIN1_RAT   (Q63764), AZIN2_MOUSE (Q8BVM4), BTRK_BACCI  (Q2L4H3), 
DCDA_ACTPA  (O69203), DCDA_BACHD  (Q9KCM5), DCDA_BUCAI  (P57513), 
DCDA_BUCAP  (Q8K9C4), DCDA_BUCBP  (Q89AC6), DCDA_CAMJE  (Q9PII5), 
DCDA_DEIRA  (Q9RTK2), DCDA_NEIMA  (Q9JWA6), DCDA_NEIMB  (Q9JXM2), 
DCDA_THEAC  (Q9HK20), DCDA_ZYMMO  (Q9Z661), NSPC_CAMJ8  (A8FNH9), 
NSPC_HERAR  (Q5QCP2), NSPC_VIBAL  (Q56575), NSPC_VIBCH  (Q9KRL4), 
NSPC_VIBCL  (C6YCI2), NSPC_VIBVU  (Q8D8D2), SPEA_AERHH  (A0KIP8), 
SPEA_AERS4  (A4SPD6), SPEA_CHRVO  (Q7NU27), SPEA_PSEPK  (Q88QC7), 
SPEA_PSESM  (Q87VU3), SPEA_SHEAM  (A1S712), SPEA_SHEB2  (B8EAI2), 
SPEA_SHEB5  (A3D3G2), SPEA_SHEB8  (A6WM65), SPEA_SHEB9  (A9KY70), 
SPEA_SHEDO  (Q12LW6), SPEA_SHEFN  (Q083L6), SPEA_SHEHH  (B0TQX3), 
SPEA_SHELP  (A3QDD8), SPEA_SHEON  (Q8EFU5), SPEA_SHEPA  (A8H5G3), 
SPEA_SHEPC  (A4Y5Y9), SPEA_SHEPW  (B8CR70), SPEA_SHESA  (A0KVN8), 
SPEA_SHESH  (A8FWJ3), SPEA_SHESM  (Q0HJY2), SPEA_SHESR  (Q0HW78), 
SPEA_SHESW  (A1RKK8), SPEA_SHEWM  (B1KRD4), SPEA_TOLAT  (C4L9A9), 
SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), SPEA_VIBVU  (Q8DA54), 
SPEA_VIBVY  (Q7MK24), SPEA_XANAC  (Q8PFQ5), SPEA_XANCP  (Q8P448), 
SPEA_XYLF2  (B2I6M1), SPEA_XYLFA  (Q9PH02), SPEA_XYLFM  (B0U1H6), 
SPEA_XYLFT  (Q87F25)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

DCOR_PARBR  (Q92445)

		
UniProtKB/Swiss-Prot
False positive sequences
22 sequences

ASB2_BOVIN  (Q3SX45), ASB2_HUMAN  (Q96Q27), ASB2_MOUSE  (Q8K0L0), 
ASB2_RAT    (Q5U2S6), CLAH1_ARATH (Q0WNJ6), CLAH2_ARATH (Q0WLB5), 
CMOA_SULDN  (Q30T90), KS6A4_HUMAN (O75676), KS6A4_MOUSE (Q9Z2B9), 
KS6A5_CHICK (Q5F3L1), KS6A5_HUMAN (O75582), KS6A5_MOUSE (Q8C050), 
KS6A5_PONAB (Q5R4K3), MGLA_VIBCH  (Q9KSD1), PHS1_SOLLC  (C1K5M3), 
POLN_CRPVC  (Q9IJX4), RPB1_FRG3G  (Q6GZW7), SCN8A_HUMAN (Q9UQD0), 
SCN8A_MOUSE (Q9WTU3), SCN8A_RAT   (O88420), SYY_STRMU   (Q8DS44), 
TBAL3_MOUSE (Q3UX10)
» More

PDB
[Detailed view]
17 PDB

1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TWI; 2ON3; 2OO0; 2P3E; 2QGH; 2YXX; 3C5Q; 3N2B; 3NZQ; 7ODC
» More

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