Entry: PS00878

General information about the entry

Entry name [info] ODR_DC_2_1
Accession [info] PS00878
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); NOV-1997 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
Pattern [info]
[FY]-[PA]-x-K-[SACV]-[NHCLFW]-x(4)-[LIVMF]-[LIVMTA]-x(2)-[LIVMA]-x(3)-
[GTE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 146 in 146 different sequences
Number of true positive hits 124 in 124 different sequences
Number of 'unknown' hits 0
Number of false positive hits 22 in 22 different sequences
Number of false negative sequences 58
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 84.93 %
Recall (true positives / (true positives + false negatives)) 68.13 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
124 sequences

ADC2_ORYSJ  (Q7XRA1    ), AZIN2_HUMAN (Q96A70    ), AZIN2_XENLA (Q9I8S4    ), 
DCDA1_ARATH (Q949X7    ), DCDA2_ARATH (Q94A94    ), DCDA_AQUAE  (O67262    ), 
DCDA_ARCFU  (O29458    ), DCDA_BACMT  (P41023    ), DCDA_BACSU  (P23630    ), 
DCDA_BACTN  (Q8A800    ), DCDA_COREF  (Q8RQM6    ), DCDA_CORGL  (P09890    ), 
DCDA_ECOLI  (P00861    ), DCDA_ECOLW  (E0IWI3    ), DCDA_FRATH  (Q2A5D5    ), 
DCDA_HAEIN  (P44316    ), DCDA_HELPJ  (Q9ZME5    ), DCDA_HELPX  (B4XMC6    ), 
DCDA_HELPY  (P56129    ), DCDA_METJA  (Q58497    ), DCDA_METTH  (O27390    ), 
DCDA_MYCBO  (P0A5M5    ), DCDA_MYCLE  (Q50140    ), DCDA_MYCS2  (Q9X5M1    ), 
DCDA_MYCTO  (P9WIU6    ), DCDA_MYCTU  (P9WIU7    ), DCDA_ORYSJ  (Q6ZG77    ), 
DCDA_PSEAE  (P19572    ), DCDA_PSEFL  (O05321    ), DCDA_STRCO  (Q9ZBH5    ), 
DCDA_SYNY3  (Q55484    ), DCDA_THEMA  (Q9X1K5    ), DCDA_VIBCH  (Q9KVL7    ), 
DCLO_SELRU  (O50657    ), DCOR1_DROME (P40807    ), DCOR1_XENLA (P27120    ), 
DCOR2_DROME (P40808    ), DCOR_BOVIN  (P27117    ), DCOR_CAEEL  (P41931    ), 
DCOR_CANAL  (P78599    ), DCOR_CAPAN  (Q8S3N2    ), DCOR_CHICK  (P27118    ), 
DCOR_CRIGR  (P14019    ), DCOR_DATST  (P50134    ), DCOR_DICDI  (Q54UF3    ), 
DCOR_HUMAN  (P11926    ), DCOR_LEIDO  (P27116    ), DCOR_MOUSE  (P00860    ), 
DCOR_MUSPA  (P27119    ), DCOR_NEUCR  (P27121    ), DCOR_PANRE  (P49725    ), 
DCOR_RAT    (P09057    ), DCOR_SCHPO  (Q9UQW9    ), DCOR_SOLLC  (O22616    ), 
DCOR_TRYBB  (P07805    ), DCOR_YEAST  (P08432    ), SPE1_ARATH  (Q9SI64    ), 
SPE1_AVESA  (P22220    ), SPE1_BRAJU  (O82475    ), SPE1_DIACA  (Q96412    ), 
SPE1_ORYSJ  (Q9SNN0    ), SPE1_PEA    (Q43075    ), SPE1_SOLLC  (P49726    ), 
SPE1_SOYBN  (Q39827    ), SPE2_ARATH  (O23141    ), SPE2_THECC  (O81160    ), 
SPEA1_SYNY3 (P74576    ), SPEA2_SYNY3 (P72587    ), SPEA_ALKEH  (Q0ACK8    ), 
SPEA_BACFN  (Q5LIQ3    ), SPEA_BACFR  (Q64ZT8    ), SPEA_BACTN  (Q8A2B1    ), 
SPEA_BACV8  (A6L012    ), SPEA_DEIRA  (Q9RXR4    ), SPEA_ECO57  (Q8XCX9    ), 
SPEA_ECO5E  (B5YQD6    ), SPEA_ECOL6  (Q8FE34    ), SPEA_ECOLI  (P21170    ), 
SPEA_ECOSM  (B1LDE8    ), SPEA_GEOBB  (B5EIW4    ), SPEA_GEODF  (B9M6H6    ), 
SPEA_GEOLS  (B3EAF3    ), SPEA_GEOMG  (Q39X78    ), SPEA_GEOSL  (A0A4W3    ), 
SPEA_GEOSM  (C6E3V4    ), SPEA_GEOUR  (A5GB52    ), SPEA_GLOVI  (Q7NE10    ), 
SPEA_HAMD5  (C4K6F4    ), SPEA_KLEP3  (B5XUB1    ), SPEA_MARHV  (A1TY02    ), 
SPEA_NEIMA  (Q9JT25    ), SPEA_NEIMB  (Q9K0U3    ), SPEA_NOSS1  (Q8YRP3    ), 
SPEA_PASMU  (Q9CL60    ), SPEA_PELPD  (A1AS90    ), SPEA_PHOLL  (Q7N121    ), 
SPEA_PROM0  (A3PA96    ), SPEA_PROM2  (A8G243    ), SPEA_PROM3  (A2CDK1    ), 
SPEA_PROM5  (A2BU00    ), SPEA_PROM9  (Q31DD8    ), SPEA_PROMA  (Q7VEG4    ), 
SPEA_PROMH  (B4F1A4    ), SPEA_PROMM  (Q7TUJ9    ), SPEA_PROMP  (Q7V3M9    ), 
SPEA_PROMS  (A2BNH3    ), SPEA_PSEAE  (Q9HUX1    ), SPEA_RHOBA  (Q7UTS2    ), 
SPEA_SALA4  (B5F5L1    ), SPEA_SALCH  (Q57K30    ), SPEA_SALDC  (B5FUJ7    ), 
SPEA_SALHS  (B4THH1    ), SPEA_SALNS  (B4T5J3    ), SPEA_SALPB  (A9N4N1    ), 
SPEA_SALSV  (B4TV55    ), SPEA_SALTI  (P60658    ), SPEA_SALTY  (P60659    ), 
SPEA_SHIF8  (Q0T0V3    ), SPEA_SHIFL  (Q83Q93    ), SPEA_SYNPX  (Q7U3S0    ), 
SPEA_SYNR3  (A5GWM2    ), SPEA_THEEB  (Q8DHY6    ), SPEA_YERPE  (Q8ZHG8    ), 
TABA_PSEAJ  (P31851    )
» more

UniProtKB/Swiss-Prot
False negative sequences
58 sequences

AZIN1_HUMAN (O14977    ), AZIN1_MOUSE (O35484    ), AZIN1_PONAB (Q5R7K3    ), 
AZIN1_RAT   (Q63764    ), AZIN2_MOUSE (Q8BVM4    ), BTRK_BACCI  (Q2L4H3    ), 
DCDA_ACTPA  (O69203    ), DCDA_BACHD  (Q9KCM5    ), DCDA_BUCAI  (P57513    ), 
DCDA_BUCAP  (Q8K9C4    ), DCDA_BUCBP  (Q89AC6    ), DCDA_CAMJE  (Q9PII5    ), 
DCDA_DEIRA  (Q9RTK2    ), DCDA_NEIMA  (Q9JWA6    ), DCDA_NEIMB  (Q9JXM2    ), 
DCDA_THEAC  (Q9HK20    ), DCDA_ZYMMO  (Q9Z661    ), NSPC_CAMJ8  (A8FNH9    ), 
NSPC_HERAR  (Q5QCP2    ), NSPC_VIBAL  (Q56575    ), NSPC_VIBCH  (Q9KRL4    ), 
NSPC_VIBCO  (C6YCI2    ), NSPC_VIBVU  (Q8D8D2    ), SPEA_AERHH  (A0KIP8    ), 
SPEA_AERS4  (A4SPD6    ), SPEA_CHRVO  (Q7NU27    ), SPEA_PSEPK  (Q88QC7    ), 
SPEA_PSESM  (Q87VU3    ), SPEA_SHEAM  (A1S712    ), SPEA_SHEB2  (B8EAI2    ), 
SPEA_SHEB5  (A3D3G2    ), SPEA_SHEB8  (A6WM65    ), SPEA_SHEB9  (A9KY70    ), 
SPEA_SHEDO  (Q12LW6    ), SPEA_SHEFN  (Q083L6    ), SPEA_SHEHH  (B0TQX3    ), 
SPEA_SHELP  (A3QDD8    ), SPEA_SHEON  (Q8EFU5    ), SPEA_SHEPA  (A8H5G3    ), 
SPEA_SHEPC  (A4Y5Y9    ), SPEA_SHEPW  (B8CR70    ), SPEA_SHESA  (A0KVN8    ), 
SPEA_SHESH  (A8FWJ3    ), SPEA_SHESM  (Q0HJY2    ), SPEA_SHESR  (Q0HW78    ), 
SPEA_SHESW  (A1RKK8    ), SPEA_SHEWM  (B1KRD4    ), SPEA_TOLAT  (C4L9A9    ), 
SPEA_VIBCH  (Q9KLD1    ), SPEA_VIBPA  (Q87JS8    ), SPEA_VIBVU  (Q8DA54    ), 
SPEA_VIBVY  (Q7MK24    ), SPEA_XANAC  (Q8PFQ5    ), SPEA_XANCP  (Q8P448    ), 
SPEA_XYLF2  (B2I6M1    ), SPEA_XYLFA  (Q9PH02    ), SPEA_XYLFM  (B0U1H6    ), 
SPEA_XYLFT  (Q87F25    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

DCOR_PARBR  (Q92445    )

		
UniProtKB/Swiss-Prot
False positive sequences
22 sequences

ASB2_BOVIN  (Q3SX45    ), ASB2_HUMAN  (Q96Q27    ), ASB2_MOUSE  (Q8K0L0    ), 
ASB2_RAT    (Q5U2S6    ), CLAH1_ARATH (Q0WNJ6    ), CLAH2_ARATH (Q0WLB5    ), 
CMOA_SULDN  (Q30T90    ), KS6A4_HUMAN (O75676    ), KS6A4_MOUSE (Q9Z2B9    ), 
KS6A5_CHICK (Q5F3L1    ), KS6A5_HUMAN (O75582    ), KS6A5_MOUSE (Q8C050    ), 
KS6A5_PONAB (Q5R4K3    ), MGLA_VIBCH  (Q9KSD1    ), PHS1_SOLLC  (C1K5M3    ), 
POLN_CRPVC  (Q9IJX4    ), RPB1_FRG3G  (Q6GZW7    ), SCN8A_HUMAN (Q9UQD0    ), 
SCN8A_MOUSE (Q9WTU3    ), SCN8A_RAT   (O88420    ), SYY_STRMU   (Q8DS44    ), 
TBAL3_MOUSE (Q3UX10    )
» more

PDB
[Detailed view]
19 PDB

1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TWI; 2ON3; 2OO0; 2P3E; 2QGH; 2YXX; 3C5Q; 3N2B; 3NZQ; 4ZGY; 5BWA; 7ODC
» more

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