Entry: PS00878

General information about the entry

Entry name [info] ODR_DC_2_1
Accession [info] PS00878
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); NOV-1997 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
Pattern [info]
[FY]-[PA]-x-K-[SACV]-[NHCLFW]-x(4)-[LIVMF]-[LIVMTA]-x(2)-[LIVMA]-x(3)-
[GTE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 146 in 146 different sequences
Number of true positive hits 124 in 124 different sequences
Number of 'unknown' hits 0
Number of false positive hits 22 in 22 different sequences
Number of false negative sequences 58
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 84.93 %
Recall (true positives / (true positives + false negatives)) 68.13 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
124 sequences

ADC2_ORYSJ  (Q7XRA1), AZIN2_HUMAN (Q96A70), AZIN2_XENLA (Q9I8S4), 
DCDA1_ARATH (Q949X7), DCDA2_ARATH (Q94A94), DCDA_AQUAE  (O67262), 
DCDA_ARCFU  (O29458), DCDA_BACMT  (P41023), DCDA_BACSU  (P23630), 
DCDA_BACTN  (Q8A800), DCDA_COREF  (Q8RQM6), DCDA_CORGL  (P09890), 
DCDA_ECOLI  (P00861), DCDA_ECOLW  (E0IWI3), DCDA_FRATH  (Q2A5D5), 
DCDA_HAEIN  (P44316), DCDA_HELPJ  (Q9ZME5), DCDA_HELPX  (B4XMC6), 
DCDA_HELPY  (P56129), DCDA_METJA  (Q58497), DCDA_METTH  (O27390), 
DCDA_MYCBO  (P0A5M5), DCDA_MYCLE  (Q50140), DCDA_MYCS2  (Q9X5M1), 
DCDA_MYCTO  (P9WIU6), DCDA_MYCTU  (P9WIU7), DCDA_ORYSJ  (Q6ZG77), 
DCDA_PSEAE  (P19572), DCDA_PSEFL  (O05321), DCDA_STRCO  (Q9ZBH5), 
DCDA_SYNY3  (Q55484), DCDA_THEMA  (Q9X1K5), DCDA_VIBCH  (Q9KVL7), 
DCLO_SELRU  (O50657), DCOR1_DROME (P40807), DCOR1_XENLA (P27120), 
DCOR2_DROME (P40808), DCOR_BOVIN  (P27117), DCOR_CAEEL  (P41931), 
DCOR_CANAL  (P78599), DCOR_CAPAN  (Q8S3N2), DCOR_CHICK  (P27118), 
DCOR_CRIGR  (P14019), DCOR_DATST  (P50134), DCOR_DICDI  (Q54UF3), 
DCOR_HUMAN  (P11926), DCOR_LEIDO  (P27116), DCOR_MOUSE  (P00860), 
DCOR_MUSPA  (P27119), DCOR_NEUCR  (P27121), DCOR_PANRE  (P49725), 
DCOR_RAT    (P09057), DCOR_SCHPO  (Q9UQW9), DCOR_SOLLC  (O22616), 
DCOR_TRYBB  (P07805), DCOR_YEAST  (P08432), SPE1_ARATH  (Q9SI64), 
SPE1_AVESA  (P22220), SPE1_BRAJU  (O82475), SPE1_DIACA  (Q96412), 
SPE1_ORYSJ  (Q9SNN0), SPE1_PEA    (Q43075), SPE1_SOLLC  (P49726), 
SPE1_SOYBN  (Q39827), SPE2_ARATH  (O23141), SPE2_THECC  (O81160), 
SPEA1_SYNY3 (P74576), SPEA2_SYNY3 (P72587), SPEA_ALKEH  (Q0ACK8), 
SPEA_BACFN  (Q5LIQ3), SPEA_BACFR  (Q64ZT8), SPEA_BACTN  (Q8A2B1), 
SPEA_BACV8  (A6L012), SPEA_DEIRA  (Q9RXR4), SPEA_ECO57  (Q8XCX9), 
SPEA_ECO5E  (B5YQD6), SPEA_ECOL6  (Q8FE34), SPEA_ECOLI  (P21170), 
SPEA_ECOSM  (B1LDE8), SPEA_GEOBB  (B5EIW4), SPEA_GEODF  (B9M6H6), 
SPEA_GEOLS  (B3EAF3), SPEA_GEOMG  (Q39X78), SPEA_GEOSL  (A0A4W3), 
SPEA_GEOSM  (C6E3V4), SPEA_GEOUR  (A5GB52), SPEA_GLOVI  (Q7NE10), 
SPEA_HAMD5  (C4K6F4), SPEA_KLEP3  (B5XUB1), SPEA_MARHV  (A1TY02), 
SPEA_NEIMA  (Q9JT25), SPEA_NEIMB  (Q9K0U3), SPEA_NOSS1  (Q8YRP3), 
SPEA_PASMU  (Q9CL60), SPEA_PELPD  (A1AS90), SPEA_PHOLL  (Q7N121), 
SPEA_PROM0  (A3PA96), SPEA_PROM2  (A8G243), SPEA_PROM3  (A2CDK1), 
SPEA_PROM5  (A2BU00), SPEA_PROM9  (Q31DD8), SPEA_PROMA  (Q7VEG4), 
SPEA_PROMH  (B4F1A4), SPEA_PROMM  (Q7TUJ9), SPEA_PROMP  (Q7V3M9), 
SPEA_PROMS  (A2BNH3), SPEA_PSEAE  (Q9HUX1), SPEA_RHOBA  (Q7UTS2), 
SPEA_SALA4  (B5F5L1), SPEA_SALCH  (Q57K30), SPEA_SALDC  (B5FUJ7), 
SPEA_SALHS  (B4THH1), SPEA_SALNS  (B4T5J3), SPEA_SALPB  (A9N4N1), 
SPEA_SALSV  (B4TV55), SPEA_SALTI  (P60658), SPEA_SALTY  (P60659), 
SPEA_SHIF8  (Q0T0V3), SPEA_SHIFL  (Q83Q93), SPEA_SYNPX  (Q7U3S0), 
SPEA_SYNR3  (A5GWM2), SPEA_THEEB  (Q8DHY6), SPEA_YERPE  (Q8ZHG8), 
TABA_PSEAJ  (P31851)
» More

UniProtKB/Swiss-Prot
False negative sequences
58 sequences

AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), 
AZIN1_RAT   (Q63764), AZIN2_MOUSE (Q8BVM4), BTRK_BACCI  (Q2L4H3), 
DCDA_ACTPA  (O69203), DCDA_BACHD  (Q9KCM5), DCDA_BUCAI  (P57513), 
DCDA_BUCAP  (Q8K9C4), DCDA_BUCBP  (Q89AC6), DCDA_CAMJE  (Q9PII5), 
DCDA_DEIRA  (Q9RTK2), DCDA_NEIMA  (Q9JWA6), DCDA_NEIMB  (Q9JXM2), 
DCDA_THEAC  (Q9HK20), DCDA_ZYMMO  (Q9Z661), NSPC_CAMJ8  (A8FNH9), 
NSPC_HERAR  (Q5QCP2), NSPC_VIBAL  (Q56575), NSPC_VIBCH  (Q9KRL4), 
NSPC_VIBCL  (C6YCI2), NSPC_VIBVU  (Q8D8D2), SPEA_AERHH  (A0KIP8), 
SPEA_AERS4  (A4SPD6), SPEA_CHRVO  (Q7NU27), SPEA_PSEPK  (Q88QC7), 
SPEA_PSESM  (Q87VU3), SPEA_SHEAM  (A1S712), SPEA_SHEB2  (B8EAI2), 
SPEA_SHEB5  (A3D3G2), SPEA_SHEB8  (A6WM65), SPEA_SHEB9  (A9KY70), 
SPEA_SHEDO  (Q12LW6), SPEA_SHEFN  (Q083L6), SPEA_SHEHH  (B0TQX3), 
SPEA_SHELP  (A3QDD8), SPEA_SHEON  (Q8EFU5), SPEA_SHEPA  (A8H5G3), 
SPEA_SHEPC  (A4Y5Y9), SPEA_SHEPW  (B8CR70), SPEA_SHESA  (A0KVN8), 
SPEA_SHESH  (A8FWJ3), SPEA_SHESM  (Q0HJY2), SPEA_SHESR  (Q0HW78), 
SPEA_SHESW  (A1RKK8), SPEA_SHEWM  (B1KRD4), SPEA_TOLAT  (C4L9A9), 
SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), SPEA_VIBVU  (Q8DA54), 
SPEA_VIBVY  (Q7MK24), SPEA_XANAC  (Q8PFQ5), SPEA_XANCP  (Q8P448), 
SPEA_XYLF2  (B2I6M1), SPEA_XYLFA  (Q9PH02), SPEA_XYLFM  (B0U1H6), 
SPEA_XYLFT  (Q87F25)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

DCOR_PARBR  (Q92445)

		
UniProtKB/Swiss-Prot
False positive sequences
22 sequences

ASB2_BOVIN  (Q3SX45), ASB2_HUMAN  (Q96Q27), ASB2_MOUSE  (Q8K0L0), 
ASB2_RAT    (Q5U2S6), CLAH1_ARATH (Q0WNJ6), CLAH2_ARATH (Q0WLB5), 
CMOA_SULDN  (Q30T90), KS6A4_HUMAN (O75676), KS6A4_MOUSE (Q9Z2B9), 
KS6A5_CHICK (Q5F3L1), KS6A5_HUMAN (O75582), KS6A5_MOUSE (Q8C050), 
KS6A5_PONAB (Q5R4K3), MGLA_VIBCH  (Q9KSD1), PHS1_SOLLC  (C1K5M3), 
POLN_CRPVC  (Q9IJX4), RPB1_FRG3G  (Q6GZW7), SCN8A_HUMAN (Q9UQD0), 
SCN8A_MOUSE (Q9WTU3), SCN8A_RAT   (O88420), SYY_STRMU   (Q8DS44), 
TBAL3_MOUSE (Q3UX10)
» More

PDB
[Detailed view]
17 PDB

1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TWI; 2ON3; 2OO0; 2P3E; 2QGH; 2YXX; 3C5Q; 3N2B; 3NZQ; 7ODC
» More

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