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Entry: PS00879

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General information about the entry

Entry name [info] ODR_DC_2_2
Accession [info] PS00879
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 signature 2.
Pattern [info]
[GSA]-x(2,6)-[LIVMSCP]-x-{N}-[LIVMF]-[DNS]-[LIVMCA]-G-G-G-[LIVMFY]-
[GSTPCEQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 169 in 169 different sequences
Number of true positive hits 143 in 143 different sequences
Number of 'unknown' hits
Number of false positive hits 26 in 26 different sequences
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 84.62 %
Recall (true positives / (true positives + false negatives)) 78.14 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
143 sequences

ADC2_ORYSJ  (Q7XRA1), ADC_HUMAN   (Q96A70), ADC_MOUSE   (Q8BVM4), 
AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), 
AZIN1_RAT   (Q63764), BTRK_BACCI  (Q2L4H3), COMT1_SACOF (O82054), 
DCDA1_ARATH (Q949X7), DCDA2_ARATH (Q94A94), DCDA_AQUAE  (O67262), 
DCDA_ARCFU  (O29458), DCDA_BACHD  (Q9KCM5), DCDA_BACMT  (P41023), 
DCDA_BACSU  (P23630), DCDA_BACTN  (Q8A800), DCDA_BUCAI  (P57513), 
DCDA_BUCAP  (Q8K9C4), DCDA_CAMJE  (Q9PII5), DCDA_COREF  (Q8RQM6), 
DCDA_CORGL  (P09890), DCDA_ECOLI  (P00861), DCDA_ECOLW  (E0IWI3), 
DCDA_HAEIN  (P44316), DCDA_HELPJ  (Q9ZME5), DCDA_HELPY  (P56129), 
DCDA_METJA  (Q58497), DCDA_MYCBO  (P0A5M5), DCDA_MYCS2  (Q9X5M1), 
DCDA_MYCTO  (P9WIU6), DCDA_MYCTU  (P9WIU7), DCDA_NEIMA  (Q9JWA6), 
DCDA_NEIMB  (Q9JXM2), DCDA_ORYSJ  (Q6ZG77), DCDA_PSEAE  (P19572), 
DCDA_PSEFL  (O05321), DCDA_STAAC  (Q5HG20), DCDA_STRCO  (Q9ZBH5), 
DCDA_SYNY3  (Q55484), DCDA_VIBCH  (Q9KVL7), DCLO_SELRU  (O50657), 
DCOR1_DROME (P40807), DCOR1_XENLA (P27120), DCOR2_DROME (P40808), 
DCOR2_XENLA (Q9I8S4), DCOR_BOVIN  (P27117), DCOR_CAEEL  (P41931), 
DCOR_CANAL  (P78599), DCOR_CAPAN  (Q8S3N2), DCOR_CHICK  (P27118), 
DCOR_CRIGR  (P14019), DCOR_DATST  (P50134), DCOR_DICDI  (Q54UF3), 
DCOR_HUMAN  (P11926), DCOR_LEIDO  (P27116), DCOR_MOUSE  (P00860), 
DCOR_MUSPA  (P27119), DCOR_NEUCR  (P27121), DCOR_PANRE  (P49725), 
DCOR_PARBR  (Q92445), DCOR_RAT    (P09057), DCOR_SOLLC  (O22616), 
DCOR_TRYBB  (P07805), DCOR_YEAST  (P08432), NSPC_HERAR  (Q5QCP2), 
SPE1_ARATH  (Q9SI64), SPE1_AVESA  (P22220), SPE1_BRAJU  (O82475), 
SPE1_DIACA  (Q96412), SPE1_ORYSJ  (Q9SNN0), SPE1_PEA    (Q43075), 
SPE1_SOLLC  (P49726), SPE1_SOYBN  (Q39827), SPE2_ARATH  (O23141), 
SPEA1_SYNY3 (P74576), SPEA_AERHH  (A0KIP8), SPEA_AERS4  (A4SPD6), 
SPEA_ALKEH  (Q0ACK8), SPEA_BACFN  (Q5LIQ3), SPEA_BACFR  (Q64ZT8), 
SPEA_BACTN  (Q8A2B1), SPEA_BACV8  (A6L012), SPEA_CHRVO  (Q7NU27), 
SPEA_DEIRA  (Q9RXR4), SPEA_ECO57  (Q8XCX9), SPEA_ECO5E  (B5YQD6), 
SPEA_ECOL6  (Q8FE34), SPEA_ECOLI  (P21170), SPEA_ECOSM  (B1LDE8), 
SPEA_GEOBB  (B5EIW4), SPEA_GEODF  (B9M6H6), SPEA_GEOLS  (B3EAF3), 
SPEA_GEOMG  (Q39X78), SPEA_GEOSL  (A0A4W3), SPEA_GEOSM  (C6E3V4), 
SPEA_GEOUR  (A5GB52), SPEA_HAMD5  (C4K6F4), SPEA_KLEP3  (B5XUB1), 
SPEA_MARAV  (A1TY02), SPEA_NEIMA  (Q9JT25), SPEA_NEIMB  (Q9K0U3), 
SPEA_NOSS1  (Q8YRP3), SPEA_PASMU  (Q9CL60), SPEA_PELPD  (A1AS90), 
SPEA_PHOLL  (Q7N121), SPEA_PROM0  (A3PA96), SPEA_PROM2  (A8G243), 
SPEA_PROM3  (A2CDK1), SPEA_PROM5  (A2BU00), SPEA_PROM9  (Q31DD8), 
SPEA_PROMA  (Q7VEG4), SPEA_PROMH  (B4F1A4), SPEA_PROMM  (Q7TUJ9), 
SPEA_PROMP  (Q7V3M9), SPEA_PROMS  (A2BNH3), SPEA_PSEAE  (Q9HUX1), 
SPEA_PSEPK  (Q88QC7), SPEA_PSESM  (Q87VU3), SPEA_RHOBA  (Q7UTS2), 
SPEA_SALA4  (B5F5L1), SPEA_SALCH  (Q57K30), SPEA_SALDC  (B5FUJ7), 
SPEA_SALHS  (B4THH1), SPEA_SALNS  (B4T5J3), SPEA_SALPB  (A9N4N1), 
SPEA_SALSV  (B4TV55), SPEA_SALTI  (P60658), SPEA_SALTY  (P60659), 
SPEA_SHIF8  (Q0T0V3), SPEA_SHIFL  (Q83Q93), SPEA_SYNPX  (Q7U3S0), 
SPEA_SYNR3  (A5GWM2), SPEA_THEEB  (Q8DHY6), SPEA_TOLAT  (C4L9A9), 
SPEA_XANAC  (Q8PFQ5), SPEA_XANCP  (Q8P448), SPEA_XYLF2  (B2I6M1), 
SPEA_XYLFA  (Q9PH02), SPEA_XYLFM  (B0U1H6), SPEA_XYLFT  (Q87F25), 
SPEA_YERPE  (Q8ZHG8), TABA_PSESZ  (P31851)
» More

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

DCDA_ACTPA  (O69203), DCDA_BUCBP  (Q89AC6), DCDA_DEIRA  (Q9RTK2), 
DCDA_FRATH  (Q2A5D5), DCDA_METTH  (O27390), DCDA_MYCLE  (Q50140), 
DCDA_THEAC  (Q9HK20), DCDA_THEMA  (Q9X1K5), DCDA_ZYMMO  (Q9Z661), 
DCOR_SCHPO  (Q9UQW9), NSPC_CAMJ8  (A8FNH9), NSPC_VIBAL  (Q56575), 
NSPC_VIBCH  (Q9KRL4), NSPC_VIBCL  (C6YCI2), NSPC_VIBVU  (Q8D8D2), 
SPEA2_SYNY3 (P72587), SPEA_GLOVI  (Q7NE10), SPEA_SHEAM  (A1S712), 
SPEA_SHEB2  (B8EAI2), SPEA_SHEB5  (A3D3G2), SPEA_SHEB8  (A6WM65), 
SPEA_SHEB9  (A9KY70), SPEA_SHEDO  (Q12LW6), SPEA_SHEFN  (Q083L6), 
SPEA_SHEHH  (B0TQX3), SPEA_SHELP  (A3QDD8), SPEA_SHEON  (Q8EFU5), 
SPEA_SHEPA  (A8H5G3), SPEA_SHEPC  (A4Y5Y9), SPEA_SHEPW  (B8CR70), 
SPEA_SHESA  (A0KVN8), SPEA_SHESH  (A8FWJ3), SPEA_SHESM  (Q0HJY2), 
SPEA_SHESR  (Q0HW78), SPEA_SHESW  (A1RKK8), SPEA_SHEWM  (B1KRD4), 
SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), SPEA_VIBVU  (Q8DA54), 
SPEA_VIBVY  (Q7MK24)
» More

UniProtKB/Swiss-Prot
False positive sequences
26 sequences

AATR2_DICDI (Q54K00), AB15B_ARATH (Q9LHD1), CG043_HUMAN (Q8WVR3), 
COMT1_MAIZE (Q06509), CUDP_METAN  (P29138), DCDA_HELPX  (B4XMC6), 
EF114_ARATH (Q9FH54), HMDH_CYBJA  (O74164), MCRC_METVA  (P07960), 
MRAY_GEOMG  (Q39YM2), MRAY_GEOSL  (Q748D3), NBN_DANRE   (Q5I2W8), 
OMT1_ORYSJ  (Q6ZD89), PFDA_METLZ  (A2STI6), PPN_MOUSE   (Q9EPX2), 
PYRH_VESOH  (A5CXD7), RABE2_HUMAN (Q9H5N1), RABE2_PONAB (Q5RCR6), 
RU1C_USTMA  (Q4P2Q5), SEPF_PROM3  (A2CBM2), SEPF_PROMM  (Q7V8W6), 
SUBL_ARATH  (O65351), TM86B_PIG   (F1RMN2), Y4YA_RHISN  (P55709), 
YP251_YEAST (Q12058), ZRP4_MAIZE  (P47917)
» More

PDB
[Detailed view]
20 PDB

1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2J66; 2O0T; 2ON3; 2OO0; 2P3E; 2TOD; 3BTN; 3N2B; 3NZQ; 7ODC
» More

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