PROSITE entry PS00879
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General information about the entry
| Entry name [info] | ODR_DC_2_2 |
| Accession [info] | PS00879 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00685 |
Name and characterization of the entry
| Description [info] | Orn/DAP/Arg decarboxylases family 2 signature 2. |
| Pattern [info] |
[GSA]-x(2,6)-[LIVMSCP]-x-{N}-[LIVMF]-[DNS]-[LIVMCA]-G-G-G-[LIVMFY]-
[GSTPCEQ].
|
Numerical results [info]
| Total number of hits | 198 in 196 different sequences |
| Number of true positive hits | 154 in 154 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 44 in 42 different sequences |
| Number of false negative sequences | 42 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 77.78 % |
| Recall (true positives / (true positives + false negatives)) | 78.57 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 3 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
154 sequences
ADC1A_TOBAC (A0A1S3YCW2), ADC1B_TOBAC (A0A1S3WYR7), ADC2_ORYSJ (Q7XRA1), AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), AZIN1_RAT (Q63764), AZIN2_HUMAN (Q96A70), AZIN2_MOUSE (Q8BVM4), AZIN2_RAT (D4A693), AZIN2_XENLA (Q9I8S4), BTRK_NIACI (Q2L4H3), COMT1_SACOF (O82054), DCDA1_ARATH (Q949X7), DCDA2_ARATH (Q94A94), DCDA_AQUAE (O67262), DCDA_ARCFU (O29458), DCDA_BACMT (P41023), DCDA_BACSU (P23630), DCDA_BACTN (Q8A800), DCDA_BUCAI (P57513), DCDA_BUCAP (Q8K9C4), DCDA_CAMJE (Q9PII5), DCDA_COREF (Q8RQM6), DCDA_CORGL (P09890), DCDA_ECOLI (P00861), DCDA_ECOLW (E0IWI3), DCDA_HAEIN (P44316), DCDA_HALH5 (Q9KCM5), DCDA_HELPJ (Q9ZME5), DCDA_HELPY (P56129), DCDA_METJA (Q58497), DCDA_MYCBO (P0A5M5), DCDA_MYCS2 (Q9X5M1), DCDA_MYCTO (P9WIU6), DCDA_MYCTU (P9WIU7), DCDA_NEIMA (Q9JWA6), DCDA_NEIMB (Q9JXM2), DCDA_ORYSJ (Q6ZG77), DCDA_PSEAE (P19572), DCDA_PSEFL (O05321), DCDA_STAAC (Q5HG20), DCDA_STRCO (Q9ZBH5), DCDA_SYNY3 (Q55484), DCDA_VIBCH (Q9KVL7), DCLO_SELRU (O50657), DCOR1_DROME (P40807), DCOR1_XENLA (P27120), DCOR2_DROME (P40808), DCOR_BOVIN (P27117), DCOR_CAEEL (P41931), DCOR_CANAL (P78599), DCOR_CAPAN (Q8S3N2), DCOR_CHICK (P27118), DCOR_CRIGR (P14019), DCOR_DATST (P50134), DCOR_DICDI (Q54UF3), DCOR_HUMAN (P11926), DCOR_LEIDO (P27116), DCOR_MOUSE (P00860), DCOR_MUSPA (P27119), DCOR_NEUCR (P27121), DCOR_PANRE (P49725), DCOR_PARBR (Q92445), DCOR_RAT(P09057), DCOR_SOLLC (O22616), DCOR_TRYBB (P07805), DCOR_YEAST (P08432), FLVG_ASPFN (B8NHE2), LOLD1_EPIUN (Q5MNI5), LOLD2_EPIUN (Q5MNH7), NSPC_HERAR (Q5QCP2), ODC1A_TOBAC (A0A1S4AUX8), ODC1B_TOBAC (P93351), ODC_NICGL (E0WN94), ODC_NICGU (Q9FPK5), SBNH_STAA8 (Q2G1M6), SPE1_ARATH (Q9SI64), SPE1_AVESA (P22220), SPE1_BRAJU (O82475), SPE1_DIACA (Q96412), SPE1_ORYSJ (Q9SNN0), SPE1_PEA(Q43075), SPE1_SOLLC (P49726), SPE1_SOYBN (Q39827), SPE2_ARATH (O23141), SPEA1_SYNY3 (P74576), SPEA_AERHH (A0KIP8), SPEA_AERS4 (A4SPD6), SPEA_ALKEH (Q0ACK8), SPEA_BACFN (Q5LIQ3), SPEA_BACFR (Q64ZT8), SPEA_BACTN (Q8A2B1), SPEA_CHRVO (Q7NU27), SPEA_CITBB (B5EIW4), SPEA_DEIRA (Q9RXR4), SPEA_ECO57 (Q8XCX9), SPEA_ECO5E (B5YQD6), SPEA_ECOL6 (Q8FE34), SPEA_ECOLI (P21170), SPEA_ECOSM (B1LDE8), SPEA_GEODF (B9M6H6), SPEA_GEOMG (Q39X78), SPEA_GEOSL (A0A4W3), SPEA_GEOSM (C6E3V4), SPEA_GEOUR (A5GB52), SPEA_HAMD5 (C4K6F4), SPEA_KLEP3 (B5XUB1), SPEA_MARN8 (A1TY02), SPEA_NEIMA (Q9JT25), SPEA_NEIMB (Q9K0U3), SPEA_NOSS1 (Q8YRP3), SPEA_PARMW (Q7U3S0), SPEA_PASMU (Q9CL60), SPEA_PELPD (A1AS90), SPEA_PHOLL (Q7N121), SPEA_PHOV8 (A6L012), SPEA_PROM0 (A3PA96), SPEA_PROM2 (A8G243), SPEA_PROM3 (A2CDK1), SPEA_PROM5 (A2BU00), SPEA_PROM9 (Q31DD8), SPEA_PROMA (Q7VEG4), SPEA_PROMH (B4F1A4), SPEA_PROMM (Q7TUJ9), SPEA_PROMP (Q7V3M9), SPEA_PROMS (A2BNH3), SPEA_PSEAE (Q9HUX1), SPEA_PSEPK (Q88QC7), SPEA_PSESM (Q87VU3), SPEA_RHOBA (Q7UTS2), SPEA_SALA4 (B5F5L1), SPEA_SALCH (Q57K30), SPEA_SALDC (B5FUJ7), SPEA_SALHS (B4THH1), SPEA_SALNS (B4T5J3), SPEA_SALPB (A9N4N1), SPEA_SALSV (B4TV55), SPEA_SALTI (P60658), SPEA_SALTY (P60659), SPEA_SHIF8 (Q0T0V3), SPEA_SHIFL (Q83Q93), SPEA_SYNR3 (A5GWM2), SPEA_THEVB (Q8DHY6), SPEA_TOLAT (C4L9A9), SPEA_TRIL1 (B3EAF3), SPEA_XANAC (Q8PFQ5), SPEA_XANCP (Q8P448), SPEA_XYLF2 (B2I6M1), SPEA_XYLFA (Q9PH02), SPEA_XYLFM (B0U1H6), SPEA_XYLFT (Q87F25), SPEA_YERPE (Q8ZHG8), TABA_PSEAJ (P31851)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
42 sequences
CAPDC_SYNY3 (P73562), DCDA_ACTPA (O69203), DCDA_BUCBP (Q89AC6), DCDA_DEIRA (Q9RTK2), DCDA_FRATH (Q2A5D5), DCDA_METTH (O27390), DCDA_MYCLE (Q50140), DCDA_THEAC (Q9HK20), DCDA_THEMA (Q9X1K5), DCDA_ZYMMO (Q9Z661), DCOR_SCHPO (Q9UQW9), DOKDC_SALTY (Q8ZNC4), NSPC_CAMJ8 (A8FNH9), NSPC_VIBAL (Q56575), NSPC_VIBCH (Q9KRL4), NSPC_VIBCO (C6YCI2), NSPC_VIBVU (Q8D8D2), SPEA2_SYNY3 (P72587), SPEA_GLOVI (Q7NE10), SPEA_SHEAM (A1S712), SPEA_SHEB2 (B8EAI2), SPEA_SHEB5 (A3D3G2), SPEA_SHEB8 (A6WM65), SPEA_SHEB9 (A9KY70), SPEA_SHEDO (Q12LW6), SPEA_SHEFN (Q083L6), SPEA_SHEHH (B0TQX3), SPEA_SHELP (A3QDD8), SPEA_SHEON (Q8EFU5), SPEA_SHEPA (A8H5G3), SPEA_SHEPC (A4Y5Y9), SPEA_SHEPW (B8CR70), SPEA_SHESA (A0KVN8), SPEA_SHESH (A8FWJ3), SPEA_SHESM (Q0HJY2), SPEA_SHESR (Q0HW78), SPEA_SHESW (A1RKK8), SPEA_SHEWM (B1KRD4), SPEA_VIBCH (Q9KLD1), SPEA_VIBPA (Q87JS8), SPEA_VIBVU (Q8DA54), SPEA_VIBVY (Q7MK24)» more |
| UniProtKB/Swiss-Prot False positive sequences |
42 sequences
AATR2_DICDI (Q54K00), AB15B_ARATH (Q9LHD1), AFLO_ASPPU (Q9UQY0), APF5_GIBF5 (S0DL59), COMT1_MAIZE (Q06509), CUDP_METAN (P29138), DCDA_HELPX (B4XMC6), DPFGI_GIBZE (I1RL18), DPMPI_MACPH (K2RGJ8), EF114_ARATH (Q9FH54), EPAD1_ORYSJ (Q75GY0), GRF1_MAIZE (A0A060D764), GSFD_PENAE (D7PI18), HMDH_CANAL (A0A1D8PD39), HMDH_CYBJA (O74164), HMDH_GANLU (B2KX91), MCRC_METVA (P07960), MRAY_GEOMG (Q39YM2), MRAY_GEOSL (Q748D3), NBN_DANRE (Q5I2W8), OMT1_ORYSJ (Q6ZD89), OMTB_ASPFN (Q9P900), PBCC_EMENI (C8VN86), PFDA_METLZ (A2STI6), PPE34_MYCTU (Q79FI9), PPN_MOUSE (Q9EPX2), PYRH_VESOH (A5CXD7), RABE2_HUMAN (Q9H5N1), RABE2_PONAB (Q5RCR6), RU1C_USTMA (Q4P2Q5), SBT13_ARATH (Q9FLI4), SBT17_ARATH (O65351), SBT3D_ARATH (Q8GUK4), SBT42_ARATH (O23357), SEPF_PROM3 (A2CBM2), SEPF_PROMM (Q7V8W6), TM86B_PIG (F1RMN2), TPC14_HUMAN (Q8WVR3), UXP_ADE05 (A8W995), Y4YA_SINFN (P55709), YP251_YEAST (Q12058), ZRP4_MAIZE (P47917)» more |
| PDB [Detailed view] |
36 PDB
1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2J66; 2O0T; 2ON3; 2OO0; 2P3E; 2TOD; 3BTN; 3N2B; 3NZQ; 4ZGY; 4ZGZ; 5BWA; 5GJM; 5GJN; 5GJO; 5GJP; 5X7M; 5X7N; 6N2A; 6N2F; 7ODC; 7RU7; 7S3F; 7S3G; 7U6P; 7U6U » more |