Entry: PS00879

General information about the entry

Entry name [info] ODR_DC_2_2
Accession [info] PS00879
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); APR-2006 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 signature 2.
Pattern [info]
[GSA]-x(2,6)-[LIVMSCP]-x-{N}-[LIVMF]-[DNS]-[LIVMCA]-G-G-G-[LIVMFY]-
[GSTPCEQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 170 in 170 different sequences
Number of true positive hits 144 in 144 different sequences
Number of 'unknown' hits 0
Number of false positive hits 26 in 26 different sequences
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 84.71 %
Recall (true positives / (true positives + false negatives)) 78.26 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
144 sequences

ADC2_ORYSJ  (Q7XRA1), AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), 
AZIN1_PONAB (Q5R7K3), AZIN1_RAT   (Q63764), AZIN2_HUMAN (Q96A70), 
AZIN2_MOUSE (Q8BVM4), AZIN2_RAT   (D4A693), AZIN2_XENLA (Q9I8S4), 
BTRK_BACCI  (Q2L4H3), COMT1_SACOF (O82054), DCDA1_ARATH (Q949X7), 
DCDA2_ARATH (Q94A94), DCDA_AQUAE  (O67262), DCDA_ARCFU  (O29458), 
DCDA_BACHD  (Q9KCM5), DCDA_BACMT  (P41023), DCDA_BACSU  (P23630), 
DCDA_BACTN  (Q8A800), DCDA_BUCAI  (P57513), DCDA_BUCAP  (Q8K9C4), 
DCDA_CAMJE  (Q9PII5), DCDA_COREF  (Q8RQM6), DCDA_CORGL  (P09890), 
DCDA_ECOLI  (P00861), DCDA_ECOLW  (E0IWI3), DCDA_HAEIN  (P44316), 
DCDA_HELPJ  (Q9ZME5), DCDA_HELPY  (P56129), DCDA_METJA  (Q58497), 
DCDA_MYCBO  (P0A5M5), DCDA_MYCS2  (Q9X5M1), DCDA_MYCTO  (P9WIU6), 
DCDA_MYCTU  (P9WIU7), DCDA_NEIMA  (Q9JWA6), DCDA_NEIMB  (Q9JXM2), 
DCDA_ORYSJ  (Q6ZG77), DCDA_PSEAE  (P19572), DCDA_PSEFL  (O05321), 
DCDA_STAAC  (Q5HG20), DCDA_STRCO  (Q9ZBH5), DCDA_SYNY3  (Q55484), 
DCDA_VIBCH  (Q9KVL7), DCLO_SELRU  (O50657), DCOR1_DROME (P40807), 
DCOR1_XENLA (P27120), DCOR2_DROME (P40808), DCOR_BOVIN  (P27117), 
DCOR_CAEEL  (P41931), DCOR_CANAL  (P78599), DCOR_CAPAN  (Q8S3N2), 
DCOR_CHICK  (P27118), DCOR_CRIGR  (P14019), DCOR_DATST  (P50134), 
DCOR_DICDI  (Q54UF3), DCOR_HUMAN  (P11926), DCOR_LEIDO  (P27116), 
DCOR_MOUSE  (P00860), DCOR_MUSPA  (P27119), DCOR_NEUCR  (P27121), 
DCOR_PANRE  (P49725), DCOR_PARBR  (Q92445), DCOR_RAT    (P09057), 
DCOR_SOLLC  (O22616), DCOR_TRYBB  (P07805), DCOR_YEAST  (P08432), 
NSPC_HERAR  (Q5QCP2), SPE1_ARATH  (Q9SI64), SPE1_AVESA  (P22220), 
SPE1_BRAJU  (O82475), SPE1_DIACA  (Q96412), SPE1_ORYSJ  (Q9SNN0), 
SPE1_PEA    (Q43075), SPE1_SOLLC  (P49726), SPE1_SOYBN  (Q39827), 
SPE2_ARATH  (O23141), SPEA1_SYNY3 (P74576), SPEA_AERHH  (A0KIP8), 
SPEA_AERS4  (A4SPD6), SPEA_ALKEH  (Q0ACK8), SPEA_BACFN  (Q5LIQ3), 
SPEA_BACFR  (Q64ZT8), SPEA_BACTN  (Q8A2B1), SPEA_BACV8  (A6L012), 
SPEA_CHRVO  (Q7NU27), SPEA_DEIRA  (Q9RXR4), SPEA_ECO57  (Q8XCX9), 
SPEA_ECO5E  (B5YQD6), SPEA_ECOL6  (Q8FE34), SPEA_ECOLI  (P21170), 
SPEA_ECOSM  (B1LDE8), SPEA_GEOBB  (B5EIW4), SPEA_GEODF  (B9M6H6), 
SPEA_GEOLS  (B3EAF3), SPEA_GEOMG  (Q39X78), SPEA_GEOSL  (A0A4W3), 
SPEA_GEOSM  (C6E3V4), SPEA_GEOUR  (A5GB52), SPEA_HAMD5  (C4K6F4), 
SPEA_KLEP3  (B5XUB1), SPEA_MARHV  (A1TY02), SPEA_NEIMA  (Q9JT25), 
SPEA_NEIMB  (Q9K0U3), SPEA_NOSS1  (Q8YRP3), SPEA_PASMU  (Q9CL60), 
SPEA_PELPD  (A1AS90), SPEA_PHOLL  (Q7N121), SPEA_PROM0  (A3PA96), 
SPEA_PROM2  (A8G243), SPEA_PROM3  (A2CDK1), SPEA_PROM5  (A2BU00), 
SPEA_PROM9  (Q31DD8), SPEA_PROMA  (Q7VEG4), SPEA_PROMH  (B4F1A4), 
SPEA_PROMM  (Q7TUJ9), SPEA_PROMP  (Q7V3M9), SPEA_PROMS  (A2BNH3), 
SPEA_PSEAE  (Q9HUX1), SPEA_PSEPK  (Q88QC7), SPEA_PSESM  (Q87VU3), 
SPEA_RHOBA  (Q7UTS2), SPEA_SALA4  (B5F5L1), SPEA_SALCH  (Q57K30), 
SPEA_SALDC  (B5FUJ7), SPEA_SALHS  (B4THH1), SPEA_SALNS  (B4T5J3), 
SPEA_SALPB  (A9N4N1), SPEA_SALSV  (B4TV55), SPEA_SALTI  (P60658), 
SPEA_SALTY  (P60659), SPEA_SHIF8  (Q0T0V3), SPEA_SHIFL  (Q83Q93), 
SPEA_SYNPX  (Q7U3S0), SPEA_SYNR3  (A5GWM2), SPEA_THEEB  (Q8DHY6), 
SPEA_TOLAT  (C4L9A9), SPEA_XANAC  (Q8PFQ5), SPEA_XANCP  (Q8P448), 
SPEA_XYLF2  (B2I6M1), SPEA_XYLFA  (Q9PH02), SPEA_XYLFM  (B0U1H6), 
SPEA_XYLFT  (Q87F25), SPEA_YERPE  (Q8ZHG8), TABA_PSEAJ  (P31851)
» More

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

DCDA_ACTPA  (O69203), DCDA_BUCBP  (Q89AC6), DCDA_DEIRA  (Q9RTK2), 
DCDA_FRATH  (Q2A5D5), DCDA_METTH  (O27390), DCDA_MYCLE  (Q50140), 
DCDA_THEAC  (Q9HK20), DCDA_THEMA  (Q9X1K5), DCDA_ZYMMO  (Q9Z661), 
DCOR_SCHPO  (Q9UQW9), NSPC_CAMJ8  (A8FNH9), NSPC_VIBAL  (Q56575), 
NSPC_VIBCH  (Q9KRL4), NSPC_VIBCL  (C6YCI2), NSPC_VIBVU  (Q8D8D2), 
SPEA2_SYNY3 (P72587), SPEA_GLOVI  (Q7NE10), SPEA_SHEAM  (A1S712), 
SPEA_SHEB2  (B8EAI2), SPEA_SHEB5  (A3D3G2), SPEA_SHEB8  (A6WM65), 
SPEA_SHEB9  (A9KY70), SPEA_SHEDO  (Q12LW6), SPEA_SHEFN  (Q083L6), 
SPEA_SHEHH  (B0TQX3), SPEA_SHELP  (A3QDD8), SPEA_SHEON  (Q8EFU5), 
SPEA_SHEPA  (A8H5G3), SPEA_SHEPC  (A4Y5Y9), SPEA_SHEPW  (B8CR70), 
SPEA_SHESA  (A0KVN8), SPEA_SHESH  (A8FWJ3), SPEA_SHESM  (Q0HJY2), 
SPEA_SHESR  (Q0HW78), SPEA_SHESW  (A1RKK8), SPEA_SHEWM  (B1KRD4), 
SPEA_VIBCH  (Q9KLD1), SPEA_VIBPA  (Q87JS8), SPEA_VIBVU  (Q8DA54), 
SPEA_VIBVY  (Q7MK24)
» More

UniProtKB/Swiss-Prot
False positive sequences
26 sequences

AATR2_DICDI (Q54K00), AB15B_ARATH (Q9LHD1), CG043_HUMAN (Q8WVR3), 
COMT1_MAIZE (Q06509), CUDP_METAN  (P29138), DCDA_HELPX  (B4XMC6), 
EF114_ARATH (Q9FH54), HMDH_CYBJA  (O74164), MCRC_METVA  (P07960), 
MRAY_GEOMG  (Q39YM2), MRAY_GEOSL  (Q748D3), NBN_DANRE   (Q5I2W8), 
OMT1_ORYSJ  (Q6ZD89), PFDA_METLZ  (A2STI6), PPN_MOUSE   (Q9EPX2), 
PYRH_VESOH  (A5CXD7), RABE2_HUMAN (Q9H5N1), RABE2_PONAB (Q5RCR6), 
RU1C_USTMA  (Q4P2Q5), SBT17_ARATH (O65351), SEPF_PROM3  (A2CBM2), 
SEPF_PROMM  (Q7V8W6), TM86B_PIG   (F1RMN2), Y4YA_RHISN  (P55709), 
YP251_YEAST (Q12058), ZRP4_MAIZE  (P47917)
» More

PDB
[Detailed view]
20 PDB

1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2J66; 2O0T; 2ON3; 2OO0; 2P3E; 2TOD; 3BTN; 3N2B; 3NZQ; 7ODC
» More

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