Entry: PS00879

General information about the entry

Entry name [info] ODR_DC_2_2
Accession [info] PS00879
Entry type [info] PATTERN
Date [info] OCT-1993 (CREATED); APR-2006 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00685

Name and characterization of the entry

Description [info] Orn/DAP/Arg decarboxylases family 2 signature 2.
Pattern [info]
[GSA]-x(2,6)-[LIVMSCP]-x-{N}-[LIVMF]-[DNS]-[LIVMCA]-G-G-G-[LIVMFY]-
[GSTPCEQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 173 in 171 different sequences
Number of true positive hits 144 in 144 different sequences
Number of 'unknown' hits 0
Number of false positive hits 29 in 27 different sequences
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 83.24 %
Recall (true positives / (true positives + false negatives)) 78.26 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
144 sequences

ADC2_ORYSJ  (Q7XRA1    ), AZIN1_HUMAN (O14977    ), AZIN1_MOUSE (O35484    ), 
AZIN1_PONAB (Q5R7K3    ), AZIN1_RAT   (Q63764    ), AZIN2_HUMAN (Q96A70    ), 
AZIN2_MOUSE (Q8BVM4    ), AZIN2_RAT   (D4A693    ), AZIN2_XENLA (Q9I8S4    ), 
BTRK_BACCI  (Q2L4H3    ), COMT1_SACOF (O82054    ), DCDA1_ARATH (Q949X7    ), 
DCDA2_ARATH (Q94A94    ), DCDA_AQUAE  (O67262    ), DCDA_ARCFU  (O29458    ), 
DCDA_BACHD  (Q9KCM5    ), DCDA_BACMT  (P41023    ), DCDA_BACSU  (P23630    ), 
DCDA_BACTN  (Q8A800    ), DCDA_BUCAI  (P57513    ), DCDA_BUCAP  (Q8K9C4    ), 
DCDA_CAMJE  (Q9PII5    ), DCDA_COREF  (Q8RQM6    ), DCDA_CORGL  (P09890    ), 
DCDA_ECOLI  (P00861    ), DCDA_ECOLW  (E0IWI3    ), DCDA_HAEIN  (P44316    ), 
DCDA_HELPJ  (Q9ZME5    ), DCDA_HELPY  (P56129    ), DCDA_METJA  (Q58497    ), 
DCDA_MYCBO  (P0A5M5    ), DCDA_MYCS2  (Q9X5M1    ), DCDA_MYCTO  (P9WIU6    ), 
DCDA_MYCTU  (P9WIU7    ), DCDA_NEIMA  (Q9JWA6    ), DCDA_NEIMB  (Q9JXM2    ), 
DCDA_ORYSJ  (Q6ZG77    ), DCDA_PSEAE  (P19572    ), DCDA_PSEFL  (O05321    ), 
DCDA_STAAC  (Q5HG20    ), DCDA_STRCO  (Q9ZBH5    ), DCDA_SYNY3  (Q55484    ), 
DCDA_VIBCH  (Q9KVL7    ), DCLO_SELRU  (O50657    ), DCOR1_DROME (P40807    ), 
DCOR1_XENLA (P27120    ), DCOR2_DROME (P40808    ), DCOR_BOVIN  (P27117    ), 
DCOR_CAEEL  (P41931    ), DCOR_CANAL  (P78599    ), DCOR_CAPAN  (Q8S3N2    ), 
DCOR_CHICK  (P27118    ), DCOR_CRIGR  (P14019    ), DCOR_DATST  (P50134    ), 
DCOR_DICDI  (Q54UF3    ), DCOR_HUMAN  (P11926    ), DCOR_LEIDO  (P27116    ), 
DCOR_MOUSE  (P00860    ), DCOR_MUSPA  (P27119    ), DCOR_NEUCR  (P27121    ), 
DCOR_PANRE  (P49725    ), DCOR_PARBR  (Q92445    ), DCOR_RAT    (P09057    ), 
DCOR_SOLLC  (O22616    ), DCOR_TRYBB  (P07805    ), DCOR_YEAST  (P08432    ), 
NSPC_HERAR  (Q5QCP2    ), SPE1_ARATH  (Q9SI64    ), SPE1_AVESA  (P22220    ), 
SPE1_BRAJU  (O82475    ), SPE1_DIACA  (Q96412    ), SPE1_ORYSJ  (Q9SNN0    ), 
SPE1_PEA    (Q43075    ), SPE1_SOLLC  (P49726    ), SPE1_SOYBN  (Q39827    ), 
SPE2_ARATH  (O23141    ), SPEA1_SYNY3 (P74576    ), SPEA_AERHH  (A0KIP8    ), 
SPEA_AERS4  (A4SPD6    ), SPEA_ALKEH  (Q0ACK8    ), SPEA_BACFN  (Q5LIQ3    ), 
SPEA_BACFR  (Q64ZT8    ), SPEA_BACTN  (Q8A2B1    ), SPEA_BACV8  (A6L012    ), 
SPEA_CHRVO  (Q7NU27    ), SPEA_DEIRA  (Q9RXR4    ), SPEA_ECO57  (Q8XCX9    ), 
SPEA_ECO5E  (B5YQD6    ), SPEA_ECOL6  (Q8FE34    ), SPEA_ECOLI  (P21170    ), 
SPEA_ECOSM  (B1LDE8    ), SPEA_GEOBB  (B5EIW4    ), SPEA_GEODF  (B9M6H6    ), 
SPEA_GEOLS  (B3EAF3    ), SPEA_GEOMG  (Q39X78    ), SPEA_GEOSL  (A0A4W3    ), 
SPEA_GEOSM  (C6E3V4    ), SPEA_GEOUR  (A5GB52    ), SPEA_HAMD5  (C4K6F4    ), 
SPEA_KLEP3  (B5XUB1    ), SPEA_MARHV  (A1TY02    ), SPEA_NEIMA  (Q9JT25    ), 
SPEA_NEIMB  (Q9K0U3    ), SPEA_NOSS1  (Q8YRP3    ), SPEA_PASMU  (Q9CL60    ), 
SPEA_PELPD  (A1AS90    ), SPEA_PHOLL  (Q7N121    ), SPEA_PROM0  (A3PA96    ), 
SPEA_PROM2  (A8G243    ), SPEA_PROM3  (A2CDK1    ), SPEA_PROM5  (A2BU00    ), 
SPEA_PROM9  (Q31DD8    ), SPEA_PROMA  (Q7VEG4    ), SPEA_PROMH  (B4F1A4    ), 
SPEA_PROMM  (Q7TUJ9    ), SPEA_PROMP  (Q7V3M9    ), SPEA_PROMS  (A2BNH3    ), 
SPEA_PSEAE  (Q9HUX1    ), SPEA_PSEPK  (Q88QC7    ), SPEA_PSESM  (Q87VU3    ), 
SPEA_RHOBA  (Q7UTS2    ), SPEA_SALA4  (B5F5L1    ), SPEA_SALCH  (Q57K30    ), 
SPEA_SALDC  (B5FUJ7    ), SPEA_SALHS  (B4THH1    ), SPEA_SALNS  (B4T5J3    ), 
SPEA_SALPB  (A9N4N1    ), SPEA_SALSV  (B4TV55    ), SPEA_SALTI  (P60658    ), 
SPEA_SALTY  (P60659    ), SPEA_SHIF8  (Q0T0V3    ), SPEA_SHIFL  (Q83Q93    ), 
SPEA_SYNPX  (Q7U3S0    ), SPEA_SYNR3  (A5GWM2    ), SPEA_THEEB  (Q8DHY6    ), 
SPEA_TOLAT  (C4L9A9    ), SPEA_XANAC  (Q8PFQ5    ), SPEA_XANCP  (Q8P448    ), 
SPEA_XYLF2  (B2I6M1    ), SPEA_XYLFA  (Q9PH02    ), SPEA_XYLFM  (B0U1H6    ), 
SPEA_XYLFT  (Q87F25    ), SPEA_YERPE  (Q8ZHG8    ), TABA_PSEAJ  (P31851    )
» more

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

DCDA_ACTPA  (O69203    ), DCDA_BUCBP  (Q89AC6    ), DCDA_DEIRA  (Q9RTK2    ), 
DCDA_FRATH  (Q2A5D5    ), DCDA_METTH  (O27390    ), DCDA_MYCLE  (Q50140    ), 
DCDA_THEAC  (Q9HK20    ), DCDA_THEMA  (Q9X1K5    ), DCDA_ZYMMO  (Q9Z661    ), 
DCOR_SCHPO  (Q9UQW9    ), NSPC_CAMJ8  (A8FNH9    ), NSPC_VIBAL  (Q56575    ), 
NSPC_VIBCH  (Q9KRL4    ), NSPC_VIBCO  (C6YCI2    ), NSPC_VIBVU  (Q8D8D2    ), 
SPEA2_SYNY3 (P72587    ), SPEA_GLOVI  (Q7NE10    ), SPEA_SHEAM  (A1S712    ), 
SPEA_SHEB2  (B8EAI2    ), SPEA_SHEB5  (A3D3G2    ), SPEA_SHEB8  (A6WM65    ), 
SPEA_SHEB9  (A9KY70    ), SPEA_SHEDO  (Q12LW6    ), SPEA_SHEFN  (Q083L6    ), 
SPEA_SHEHH  (B0TQX3    ), SPEA_SHELP  (A3QDD8    ), SPEA_SHEON  (Q8EFU5    ), 
SPEA_SHEPA  (A8H5G3    ), SPEA_SHEPC  (A4Y5Y9    ), SPEA_SHEPW  (B8CR70    ), 
SPEA_SHESA  (A0KVN8    ), SPEA_SHESH  (A8FWJ3    ), SPEA_SHESM  (Q0HJY2    ), 
SPEA_SHESR  (Q0HW78    ), SPEA_SHESW  (A1RKK8    ), SPEA_SHEWM  (B1KRD4    ), 
SPEA_VIBCH  (Q9KLD1    ), SPEA_VIBPA  (Q87JS8    ), SPEA_VIBVU  (Q8DA54    ), 
SPEA_VIBVY  (Q7MK24    )
» more

UniProtKB/Swiss-Prot
False positive sequences
27 sequences

AATR2_DICDI (Q54K00    ), AB15B_ARATH (Q9LHD1    ), CG043_HUMAN (Q8WVR3    ), 
COMT1_MAIZE (Q06509    ), CUDP_METAN  (P29138    ), DCDA_HELPX  (B4XMC6    ), 
EF114_ARATH (Q9FH54    ), HMDH_CYBJA  (O74164    ), MCRC_METVA  (P07960    ), 
MRAY_GEOMG  (Q39YM2    ), MRAY_GEOSL  (Q748D3    ), NBN_DANRE   (Q5I2W8    ), 
OMT1_ORYSJ  (Q6ZD89    ), PFDA_METLZ  (A2STI6    ), PPE34_MYCTU (Q79FI9    ), 
PPN_MOUSE   (Q9EPX2    ), PYRH_VESOH  (A5CXD7    ), RABE2_HUMAN (Q9H5N1    ), 
RABE2_PONAB (Q5RCR6    ), RU1C_USTMA  (Q4P2Q5    ), SBT17_ARATH (O65351    ), 
SEPF_PROM3  (A2CBM2    ), SEPF_PROMM  (Q7V8W6    ), TM86B_PIG   (F1RMN2    ), 
Y4YA_SINFN  (P55709    ), YP251_YEAST (Q12058    ), ZRP4_MAIZE  (P47917    )
» more

PDB
[Detailed view]
23 PDB

1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2J66; 2O0T; 2ON3; 2OO0; 2P3E; 2TOD; 3BTN; 3N2B; 3NZQ; 4ZGY; 4ZGZ; 5BWA; 7ODC
» more

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