Entry: PS00914

General information about the entry
Entry name SYNTAXIN
Accession number PS00914
Entry type PATTERN
Date OCT-1993 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00709
Name and characterization of the entry
DescriptionSyntaxin / epimorphin family signature.
Pattern [RQLKA]-x(3)-[LIVMAW]-x(2)-[LIVM]-[ESHLKAGQV]-x(2)-[LIVMT]-x-[DEVMNRAST]- [LIVMT]-x(2)-[LIVMQ]-[FSAQGVM]-x(2)-[LIVMF]-x(3)-[LIVT]-x(2)-Q- [GADEQVST]-x(2)-[LIVMA]-[DNQTEI]-x-[LIVMF]-[DESVHAG]-x(2,3)-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 98 hits in 98 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 98 hits in 98 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 14
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 87.50 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
PEP12_YEAST (P32854), PSY1_SCHPO  (Q9USH7), SED5_YEAST  (Q01590), 
SSO1_YEAST  (P32867), SSO2_YEAST  (P39926), STX10_HUMAN (O60499), 
STX11_HUMAN (O75558), STX11_MOUSE (Q9D3G5), STX12_HUMAN (Q86Y82), 
STX12_MOUSE (Q9ER00), STX12_PONAB (Q5RBW6), STX12_RAT   (G3V7P1), 
STX16_HUMAN (O14662), STX16_MOUSE (Q8BVI5), STX17_BOVIN (Q5E9Y2), 
STX17_HUMAN (P56962), STX17_MOUSE (Q9D0I4), STX17_RAT   (Q9Z158), 
STX18_DANRE (Q4VBI7), STX18_HUMAN (Q9P2W9), STX18_MOUSE (Q8VDS8), 
STX18_PONAB (Q5REB4), STX18_RAT   (Q68FW4), STX19_BOVIN (Q0VCI2), 
STX19_HUMAN (Q8N4C7), STX19_MOUSE (Q8R1Q0), STX19_PONAB (Q5RAL4), 
STX1A_BOVIN (P32850), STX1A_CAEBR (A8WVD0), STX1A_CAEEL (O16000), 
STX1A_DROME (Q24547), STX1A_HUMAN (Q16623), STX1A_MOUSE (O35526), 
STX1A_PONAB (Q5R4L2), STX1A_RAT   (P32851), STX1B_BOVIN (P61267), 
STX1B_HUMAN (P61266), STX1B_MOUSE (P61264), STX1B_RAT   (P61265), 
STX1B_SHEEP (P61268), STX2_CAEEL  (Q20574), STX2_HUMAN  (P32856), 
STX2_MOUSE  (Q00262), STX2_RAT    (P50279), STX3_CAEEL  (Q20024), 
STX3_HUMAN  (Q13277), STX3_MOUSE  (Q64704), STX3_RAT    (Q08849), 
STX4_BOVIN  (Q3SWZ3), STX4_CAEEL  (P91409), STX4_HUMAN  (Q12846), 
STX4_MOUSE  (P70452), STX4_RAT    (Q08850), STX5_BOVIN  (Q08DB5), 
STX5_CAEEL  (Q20797), STX5_DROME  (Q24509), STX5_HUMAN  (Q13190), 
STX5_MOUSE  (Q8K1E0), STX5_RAT    (Q08851), STX6_CAEEL  (P83528), 
STX6_CHICK  (Q5ZL19), STX6_HUMAN  (O43752), STX6_MOUSE  (Q9JKK1), 
STX6_PONAB  (Q5R6Q2), STX6_RAT    (Q63635), STX7A_DICDI (Q54JY7), 
STX7_BOVIN  (Q3ZBT5), STX7_HUMAN  (O15400), STX7_MOUSE  (O70439), 
STX7_PONAB  (Q5R602), STX7_RAT    (O70257), STX_APLCA   (Q16932), 
SY111_ARATH (Q42374), SY112_ARATH (Q9ZPV9), SY121_ARATH (Q9ZSD4), 
SY122_ARATH (Q9SVC2), SY123_ARATH (Q9ZQZ8), SY124_ARATH (O64791), 
SY125_ARATH (Q9SXB0), SY131_ARATH (Q9SRV7), SY132_ARATH (Q8VZU2), 
SYP21_ARATH (Q39233), SYP22_ARATH (P93654), SYP23_ARATH (O04378), 
SYP31_ARATH (Q9FFK1), SYP32_ARATH (Q9LK09), SYP41_ARATH (O65359), 
SYP42_ARATH (Q9SWH4), SYP43_ARATH (Q9SUJ1), SYP51_ARATH (Q9SA23), 
SYP52_ARATH (Q94KK7), SYP61_ARATH (Q946Y7), SYP71_ARATH (Q9SF29), 
SYP72_ARATH (Q94KK6), SYP73_ARATH (Q94KK5), TLG1_YEAST  (Q03322), 
TLG2_YEAST  (Q08144), VAM3_YEAST  (Q12241)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
FSV1_SCHPO  (O14222), PEP12_SCHPO (O94651), SED5_SCHPO  (O13644), 
STX8A_DICDI (Q553P5), STX8_BOVIN  (Q3T075), STX8_HUMAN  (Q9UNK0), 
STX8_MOUSE  (O88983), STX8_RAT    (Q9Z2Q7), SYP24_ARATH (Q9C615), 
SYP81_ARATH (P59277), TLG1_SCHPO  (Q9HGN3), TLG2_SCHPO  (Q9P6P1), 
UFE1_SCHPO  (O94531), UFE1_YEAST  (P41834)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1GL2; 1HVV; 1JTH; 1KIL; 1N7S; 1SFC; 1URQ; 2BU0; 2NPS; 3B5N; 3C98; 3HD7; 3IPD; 3RK2; 3RK3; 3RL0;

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