Entry: PS00940

General information about the entry

Entry name [info] GAMMA_THIONIN
Accession [info] PS00940
Entry type [info] PATTERN
Date [info] 01-JUN-1994 CREATED; 01-DEC-2004 DATA UPDATE; 05-JUL-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00725

Name and characterization of the entry

Description [info] Gamma-thionins family signature.
Pattern [info] 
[KRGAQS]-x-C-x(3)-[SVA]-x(2)-[FYWH]-x(1,2)-[GF]-x-C-x(5)-C-x(3)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_07 which contains 555'100 sequence entries.


Total number of hits 74 in 74 different sequences
Number of true positive hits 74 in 74 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.36 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 3
Site [info] disulfide at position 11
Site [info] disulfide at position 13
Site [info] disulfide at position 15
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 74 sequences 

DEF01_ARATH (Q9ZUL7    ), DEF02_ARATH (Q39182    ), DEF03_ARATH (P82781    ), 

DEF04_ARATH (Q41914    ), DEF05_ARATH (Q9C947    ), DEF07_ARATH (P82784    ), 
DEF08_ARATH (P82782    ), DEF09_ARATH (P82785    ), DEF10_ARATH (Q9ZUL8    ), 
DEF11_TRIKH (P84965    ), DEF12_TRIMO (P84964    ), DEF13_ARATH (P30224    ), 
DEF14_ARATH (O80995    ), DEF15_ARATH (O80994    ), DEF16_ARATH (Q9FI23    ), 
DEF17_ARATH (Q9FI22    ), DEF19_ARATH (P82787    ), DEF1_BRACM  (P30227    ), 
DEF1_BRANA  (P69240    ), DEF1_CAPAN  (Q43413    ), DEF1_ECHCG  (P86518    ), 
DEF1_HEUSA  (P0C8Y5    ), DEF1_HORVU  (P20230    ), DEF1_MAIZE  (P81008    ), 
DEF1_NICPA  (O24115    ), DEF1_NIGSA  (P86972    ), DEF1_PEA    (P81929    ), 
DEF1_PINSY  (A4L7R7    ), DEF1_RAPSA  (P69241    ), DEF1_SINAL  (P30231    ), 
DEF1_SORBI  (P21923    ), DEF1_TRIKH  (P84963    ), DEF1_VICFA  (P81456    ), 
DEF1_VIGUN  (P83399    ), DEF1_WHEAT  (P20158    ), DEF21_SORBI (Q09198    ), 
DEF2A_SINAL (P30232    ), DEF2B_SINAL (Q10989    ), DEF2_ARAHY  (B3EWP4    ), 
DEF2_BRACM  (P30228    ), DEF2_CAPAN  (O65740    ), DEF2_ECHCG  (P86519    ), 
DEF2_MAIZE  (P81009    ), DEF2_NIGSA  (P86973    ), DEF2_PEA    (P81930    ), 
DEF2_PINSY  (A4L7R8    ), DEF2_RAPSA  (P30230    ), DEF2_SORBI  (P21924    ), 
DEF2_TRIKH  (P84968    ), DEF2_VICFA  (P81457    ), DEF2_WHEAT  (P20159    ), 
DEF3_BRANA  (Q39313    ), DEF3_RAPSA  (O24332    ), DEF3_SORBI  (P21925    ), 
DEF3_TRIKH  (P84970    ), DEF4_RAPSA  (O24331    ), DEF4_TRIKH  (P84971    ), 
DEF5_TRIKH  (P84966    ), DEF61_TRIKH (P84969    ), DEF6_TRIKH  (P84967    ), 
DEFD2_SPIOL (P81571    ), DEFD7_SPIOL (P81573    ), DEF_LENCC   (B3F051    ), 
DEF_NELNU   (A3FPF2    ), DEF_NICAL   (Q8GTM0    ), DEF_PETIN   (Q40901    ), 
DEF_SOYBN   (Q07502    ), DEF_TOBAC   (P32026    ), DEF_VIGUN   (P18646    ), 
DF322_SOLTU (P20346    ), DFAX1_BETVU (P81493    ), DFAX2_BETVU (P82010    ), 
DFSD2_HELAN (P82659    ), SF18_HELAN  (P22357    )
» more

UniProtKB/Swiss-Prot
False negative sequences		 7 sequences 

ALL1_ARTVU  (Q84ZX5    ), DEF06_ARATH (Q9FFP8    ), DEF18_ARATH (Q9FZ31    ), 

DEF2_VIGUN  (P84920    ), DEF_GYMCO   (B5LZ79    ), DF230_PEA   (Q01783    ), 
DF39_PEA    (Q01784    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences		 3 sequences 

DEF2_BRANA  (P30226    ), DEF_PHACN   (P84785    ), DEF_VIGUS   (P84868    )


				
	

	

		PDB
[Detailed view]		
		
			11 PDB
			


			1AYJ; 1GPS; 1GPT; 1JKZ; 1MR4; 2LJ7; 2N2Q; 2N2R; 4AAZ; 4AB0; 4CQK
				
	





View entry in original PROSITE format


View entry in raw text format (no links)


Direct ScanProsite submission