Entry: PS00950

General information about the entry
Entry name BACTERIAL_OPSIN_1
Accession number PS00950
Entry type PATTERN
Date JUN-1994 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00291
Name and characterization of the entry
DescriptionBacterial rhodopsins signature 1.
Pattern R-Y-x-[DT]-W-x-[LIVMF]-[ST]-[TV]-P-[LIVM]-[LIVMNQ]-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 31 hits in 31 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 31 hits in 31 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BAC3_HALVA  (Q48334), BACH_HALHM  (P33970), BACH_HALHP  (Q48315), 
BACH_HALHS  (Q48314), BACH_HALS4  (O93741), BACH_HALSA  (P16102), 
BACH_HALSD  (O93742), BACH_HALSS  (P33742), BACH_HALVA  (P94853), 
BACH_NATPH  (P15647), BACR1_HALS1 (P69051), BACR1_HALSS (P69052), 
BACR2_HALS2 (P29563), BACR3_HALSD (P96787), BACR_HALAR  (Q57101), 
BACR_HALHM  (P33969), BACR_HALHP  (P33971), BACR_HALHS  (P33972), 
BACR_HALS4  (O93740), BACR_HALSA  (P02945), BACR_HALSR  (Q53496), 
BACR_HALVA  (P94854), BACS1_HALSA (P25964), BACS1_HALSS (P33743), 
BACS2_HALSA (P71411), BACS2_HALVA (P42197), BACS2_NATPH (P42196), 
BACS_HALSD  (O93743), NOP1_NEUCR  (Q9UW81), PRRB_PRB02  (Q9AFF7), 
PRRG_PRB01  (Q9F7P4)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
BACH_HALAR  (Q53461)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AP9; 1AT9; 1BAC; 1BAD; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1FBK; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1KG8; 1KG9; 1KGB; 1KME; 1L0M; 1M0K; 1M0L; 1M0M; 1O0A; 1P8H; 1P8I; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1SR1; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2L6X; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3HAN; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QBG; 3QBI; 3QBK; 3QBL; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 4FPD; 4HWL; 4HYX;

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