Entry: PS00959

General information about the entry

Entry name [info] HISTONE_H3_2
Accession [info] PS00959
Entry type [info] PATTERN
Date [info] JUN-1994 (CREATED); NOV-1997 (DATA UPDATE); APR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00287

Name and characterization of the entry

Description [info] Histone H3 signature 2.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_06 which contains 548'586 sequence entries.

Total number of hits 178 in 178 different sequences
Number of true positive hits 178 in 178 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 11
Number of 'partial' sequences 21
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.18 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
178 sequences

CENPA_YEAST (P36012), H31_BOVIN   (P68432), H31_CANAL   (Q59VN2), 
H31_CHLRE   (Q42681), H31_DEBHA   (Q6BRZ5), H31_HUMAN   (P68431), 
H31_LODEL   (A5DWE2), H31_MOUSE   (P68433), H31_MUSPA   (Q6LBF0), 
H31_PICGU   (A5DFC5), H31_PICST   (A3LXD5), H31_RAT     (Q6LED0), 
H31_SCHPO   (P09988), H31_STYLE   (P81195), H31_TETPY   (P69149), 
H31_TETTH   (P69150), H31_USTMA   (Q4P7J7), H32_ARATH   (P59226), 
H32_ASPOF   (Q6LBE3), H32_BOVIN   (P84227), H32_BRANA   (Q6LCK1), 
H32_CAIMO   (P84230), H32_CHICK   (P84229), H32_CHLRE   (Q6LCW8), 
H32_CICIN   (Q5MYA4), H32_CRILO   (Q64400), H32_DANRE   (Q4QRF4), 
H32_ENCAL   (P08903), H32_EUPES   (Q71T45), H32_HUMAN   (Q71DI3), 
H32_ICTBU   (P84231), H32_LILLO   (Q402E1), H32_MAIZE   (P69246), 
H32_MEDSA   (P68429), H32_MOUSE   (P84228), H32_MUSPA   (Q6LBE8), 
H32_ONCMY   (P84234), H32_ONOVI   (P68430), H32_ORYSI   (A2Y533), 
H32_ORYSJ   (Q2RAD9), H32_PEA     (P68427), H32_PETCR   (P69248), 
H32_PORAF   (P84232), H32_TOBAC   (Q76MV0), H32_USTMA   (Q4PB04), 
H32_WHEAT   (P68428), H32_XENLA   (P84233), H32_XENTR   (Q28D37), 
H331_CAEEL  (Q10453), H332_CAEEL  (Q9U281), H33A_DICDI  (O15819), 
H33A_LILLO  (Q402E2), H33B_DICDI  (Q55BN9), H33B_LILLO  (Q2Z2F4), 
H33C_DICDI  (Q55BP0), H33L1_CAEEL (Q27490), H33L2_CAEEL (Q27532), 
H33L3_CAEEL (Q27489), H33_ARATH   (P59169), H33_BOVIN   (Q5E9F8), 
H33_CANAL   (Q5ADQ0), H33_CAPAN   (Q6RUR1), H33_CHICK   (P84247), 
H33_CHLRE   (P50564), H33_DANRE   (Q6PI20), H33_DEBHA   (Q6BMU4), 
H33_DROHY   (P84250), H33_DROME   (P84249), H33_GOSHI   (Q71V89), 
H33_HORVU   (P06353), H33_HUMAN   (P84243), H33_LODEL   (A5E094), 
H33_LOLMU   (Q3C2E5), H33_LOLTE   (P69245), H33_MEDSA   (P69244), 
H33_MOUSE   (P84244), H33_ORYCO   (Q71U98), H33_ORYSI   (A2XHJ3), 
H33_ORYSJ   (Q0JCT1), H33_PICGU   (A5DG57), H33_PICST   (A3GHN6), 
H33_PIG     (Q71LE2), H33_PINPS   (Q711T2), H33_PONAB   (Q5RCC9), 
H33_RABIT   (P84246), H33_RAT     (P84245), H33_SCHPO   (P10651), 
H33_SPISO   (P84248), H33_STYLE   (P81197), H33_TETPY   (P15512), 
H33_TETTS   (P41353), H33_TOBAC   (Q76N23), H33_TRIPS   (Q8WSF1), 
H33_VITVI   (Q71H73), H33_XENLA   (Q6PI79), H33_XENTR   (Q6P823), 
H34_STYLE   (P81198), H34_TETTS   (Q22RG7), H35_STYLE   (P81199), 
H36_STYLE   (P81200), H37_STYLE   (P81201), H38_STYLE   (P81202), 
H39_STYLE   (P81196), H3CL_BOVIN  (Q3SZB8), H3C_BOVIN   (A5PK61), 
H3C_CAIMO   (P06902), H3C_HUMAN   (Q6NXT2), H3C_MOUSE   (P02301), 
H3C_XENLA   (P02302), H3L1_ARATH  (Q9FX60), H3L2_ARATH  (Q9FXI7), 
H3L3_ARATH  (Q9LR02), H3L4_ARATH  (Q9LXU8), H3L5_ARATH  (Q9FKQ3), 
H3_ACRFO    (P22843), H3_AJECA    (Q9P427), H3_ASHGO    (Q757N1), 
H3_ASPCL    (A1CP80), H3_ASPFU    (P61832), H3_ASPNC    (A2QRR5), 
H3_ASPOR    (Q2UCQ0), H3_ASPTN    (Q0D0E8), H3_CAEEL    (P08898), 
H3_CANGA    (P61833), H3_CHAGB    (Q6DL03), H3_CHITH    (P84238), 
H3_COCIM    (Q1E225), H3_CRYNB    (P0CO05), H3_CRYNJ    (P0CO04), 
H3_DERIM    (P69071), H3_DROHY    (P84236), H3_DROME    (P02299), 
H3_EMENI    (P23753), H3_ENTHI    (Q06196), H3_EUPCR    (P90543), 
H3_GIBZE    (Q4IER8), H3_GRIJA    (Q7XYZ0), H3_HYPJE    (P61835), 
H3_KLULA    (P61831), H3_LEIIN    (P40285), H3_LYTPI    (P69072), 
H3_MAGO7    (A4RCX7), H3_MARPO    (Q5DWI3), H3_MASBA    (Q9U7D1), 
H3_MORAP    (Q9HDN1), H3_NEOFI    (A1D240), H3_NEUCR    (P07041), 
H3_PARLI    (P69073), H3_PENFN    (P61834), H3_PHANO    (Q0UY45), 
H3_PISBR    (P69074), H3_PISOC    (P69075), H3_PLADU    (P84235), 
H3_PSAMI    (P69076), H3_PYCHE    (P69077), H3_SOLST    (P69078), 
H3_STRDR    (P69079), H3_STRPU    (P06352), H3_TIGCA    (P84237), 
H3_URECA    (P84239), H3_VOLCA    (P08437), H3_YARLI    (Q6C0C4), 
H3_YEAST    (P61830), H3_ZYGBA    (P61836), HCP3L_CAEEL (P34440), 
HCP3_CAEEL  (P34470)
» More

False negative sequences
11 sequences

H31T_HUMAN  (Q16695), H31_ENCCU   (Q8SS77), H3L_ENCCU   (Q8SQP3), 
H3V1_DICDI  (Q54F38), H3V2_DICDI  (Q54Z07)
» More

'Partial' sequences
21 sequences

H32_TETAM   (P69110), H32_TETAU   (P69111), H32_TETBO   (P17319), 
H32_TETCA   (P69112), H32_TETCU   (P69113), H32_TETEL   (P69114), 
H32_TETFU   (P69115), H32_TETHY   (P69116), H32_TETLE   (P69117), 
H32_TETMA   (P69118), H32_TETMI   (P69119), H32_TETNA   (P69120), 
H32_TETNI   (P69121), H32_TETPA   (P69123), H32_TETPI   (P69124), 
H32_TETPR   (P69122), H32_TETRO   (P69125), H32_TETSO   (P69126), 
H32_TETTR   (P69127), H3_LITVA    (P83864), H3_NARPS    (P80553)
» More

[Detailed view]
115 PDB

1AOI; 1EQZ; 1F66; 1HIO; 1HQ3; 1ID3; 1KX3; 1KX4; 1KX5; 1M18; 1M19; 1M1A; 1P34; 1P3A; 1P3B; 1P3F; 1P3G; 1P3I; 1P3K; 1P3L; 1P3M; 1P3O; 1P3P; 1S32; 1TZY; 1U35; 1ZBB; 1ZLA; 2ARO; 2CV5; 2F8N; 2FJ7; 2HIO; 2HUE; 2IO5; 2L5A; 2LY8; 2NQB; 2NZD; 2PYO; 2YFV; 2YFW; 3AFA; 3AN2; 3AV1; 3AV2; 3AYW; 3AZE; 3AZF; 3AZG; 3AZH; 3AZI; 3AZJ; 3AZK; 3AZL; 3AZM; 3AZN; 3B6F; 3B6G; 3C1B; 3C1C; 3C9K; 3KUY; 3KWQ; 3KXB; 3LEL; 3LJA; 3LZ0; 3LZ1; 3MGP; 3MGQ; 3MGR; 3MGS; 3MNN; 3MVD; 3NQJ; 3NQU; 3O62; 3R45; 3REH; 3REI; 3REJ; 3REK; 3REL; 3TU4; 3UT9; 3UTA; 3UTB; 3W96; 3W97; 3W98; 3W99; 3WA9; 3WAA; 3WKJ; 3WTP; 4EO5; 4H9N; 4H9O; 4H9P; 4H9Q; 4H9R; 4H9S; 4HGA; 4J8U; 4J8V; 4J8W; 4J8X; 4JJN; 4KGC; 4KUD; 4LD9; 4R8P; 4UUZ; 4X23
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission