Entry: PS00959

General information about the entry

Entry name [info] HISTONE_H3_2
Accession [info] PS00959
Entry type [info] PATTERN
Date [info] JUN-1994 (CREATED); NOV-1997 (DATA UPDATE); DEC-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00287

Name and characterization of the entry

Description [info] Histone H3 signature 2.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_01 which contains 550'299 sequence entries.

Total number of hits 178 in 178 different sequences
Number of true positive hits 178 in 178 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 11
Number of 'partial' sequences 21
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 94.18 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
178 sequences

CENPA_YEAST (P36012), H31_BOVIN   (P68432), H31_CANAL   (Q59VN2), 
H31_CHLRE   (Q42681), H31_DEBHA   (Q6BRZ5), H31_HUMAN   (P68431), 
H31_LODEL   (A5DWE2), H31_MOUSE   (P68433), H31_MUSPA   (Q6LBF0), 
H31_PICGU   (A5DFC5), H31_PICST   (A3LXD5), H31_RAT     (Q6LED0), 
H31_SCHPO   (P09988), H31_STYLE   (P81195), H31_TETPY   (P69149), 
H31_TETTH   (P69150), H31_USTMA   (Q4P7J7), H32_ARATH   (P59226), 
H32_ASPOF   (Q6LBE3), H32_BOVIN   (P84227), H32_BRANA   (Q6LCK1), 
H32_CAIMO   (P84230), H32_CHICK   (P84229), H32_CHLRE   (Q6LCW8), 
H32_CICIN   (Q5MYA4), H32_CRILO   (Q64400), H32_DANRE   (Q4QRF4), 
H32_ENCAL   (P08903), H32_EUPES   (Q71T45), H32_HUMAN   (Q71DI3), 
H32_ICTBU   (P84231), H32_LILLO   (Q402E1), H32_MAIZE   (P69246), 
H32_MEDSA   (P68429), H32_MOUSE   (P84228), H32_MUSPA   (Q6LBE8), 
H32_ONCMY   (P84234), H32_ONOVI   (P68430), H32_ORYSI   (A2Y533), 
H32_ORYSJ   (Q2RAD9), H32_PEA     (P68427), H32_PETCR   (P69248), 
H32_PORAF   (P84232), H32_TOBAC   (Q76MV0), H32_USTMA   (Q4PB04), 
H32_WHEAT   (P68428), H32_XENLA   (P84233), H32_XENTR   (Q28D37), 
H331_CAEEL  (Q10453), H332_CAEEL  (Q9U281), H33A_DICDI  (O15819), 
H33A_LILLO  (Q402E2), H33B_DICDI  (Q55BN9), H33B_LILLO  (Q2Z2F4), 
H33C_DICDI  (Q55BP0), H33L1_CAEEL (Q27490), H33L2_CAEEL (Q27532), 
H33L3_CAEEL (Q27489), H33_ARATH   (P59169), H33_BOVIN   (Q5E9F8), 
H33_CANAL   (Q5ADQ0), H33_CAPAN   (Q6RUR1), H33_CHICK   (P84247), 
H33_CHLRE   (P50564), H33_DANRE   (Q6PI20), H33_DEBHA   (Q6BMU4), 
H33_DROHY   (P84250), H33_DROME   (P84249), H33_GOSHI   (Q71V89), 
H33_HORVU   (P06353), H33_HUMAN   (P84243), H33_LODEL   (A5E094), 
H33_LOLMU   (Q3C2E5), H33_LOLTE   (P69245), H33_MEDSA   (P69244), 
H33_MOUSE   (P84244), H33_ORYCO   (Q71U98), H33_ORYSI   (A2XHJ3), 
H33_ORYSJ   (Q0JCT1), H33_PICGU   (A5DG57), H33_PICST   (A3GHN6), 
H33_PIG     (Q71LE2), H33_PINPS   (Q711T2), H33_PONAB   (Q5RCC9), 
H33_RABIT   (P84246), H33_RAT     (P84245), H33_SCHPO   (P10651), 
H33_SPISO   (P84248), H33_STYLE   (P81197), H33_TETPY   (P15512), 
H33_TETTS   (P41353), H33_TOBAC   (Q76N23), H33_TRIPS   (Q8WSF1), 
H33_VITVI   (Q71H73), H33_XENLA   (Q6PI79), H33_XENTR   (Q6P823), 
H34_STYLE   (P81198), H34_TETTS   (Q22RG7), H35_STYLE   (P81199), 
H36_STYLE   (P81200), H37_STYLE   (P81201), H38_STYLE   (P81202), 
H39_STYLE   (P81196), H3CL_BOVIN  (Q3SZB8), H3C_BOVIN   (A5PK61), 
H3C_CAIMO   (P06902), H3C_HUMAN   (Q6NXT2), H3C_MOUSE   (P02301), 
H3C_XENLA   (P02302), H3L1_ARATH  (Q9FX60), H3L2_ARATH  (Q9FXI7), 
H3L3_ARATH  (Q9LR02), H3L4_ARATH  (Q9LXU8), H3L5_ARATH  (Q9FKQ3), 
H3_ACRFO    (P22843), H3_AJECA    (Q9P427), H3_ASHGO    (Q757N1), 
H3_ASPCL    (A1CP80), H3_ASPFU    (P61832), H3_ASPNC    (A2QRR5), 
H3_ASPOR    (Q2UCQ0), H3_ASPTN    (Q0D0E8), H3_CAEEL    (P08898), 
H3_CANGA    (P61833), H3_CHAGB    (Q6DL03), H3_CHITH    (P84238), 
H3_COCIM    (Q1E225), H3_CRYNB    (P0CO05), H3_CRYNJ    (P0CO04), 
H3_DERIM    (P69071), H3_DROHY    (P84236), H3_DROME    (P02299), 
H3_EMENI    (P23753), H3_ENTHI    (Q06196), H3_EUPCR    (P90543), 
H3_GIBZE    (Q4IER8), H3_GRIJA    (Q7XYZ0), H3_HYPJE    (P61835), 
H3_KLULA    (P61831), H3_LEIIN    (P40285), H3_LYTPI    (P69072), 
H3_MAGO7    (A4RCX7), H3_MARPO    (Q5DWI3), H3_MASBA    (Q9U7D1), 
H3_MORAP    (Q9HDN1), H3_NEOFI    (A1D240), H3_NEUCR    (P07041), 
H3_PARLI    (P69073), H3_PHANO    (Q0UY45), H3_PISBR    (P69074), 
H3_PISOC    (P69075), H3_PLADU    (P84235), H3_PSAMI    (P69076), 
H3_PYCHE    (P69077), H3_SOLST    (P69078), H3_STRDR    (P69079), 
H3_STRPU    (P06352), H3_TALFU    (P61834), H3_TIGCA    (P84237), 
H3_URECA    (P84239), H3_VOLCA    (P08437), H3_YARLI    (Q6C0C4), 
H3_YEAST    (P61830), H3_ZYGBA    (P61836), HCP3L_CAEEL (P34440), 
HCP3_CAEEL  (P34470)
» more

False negative sequences
11 sequences

H31T_HUMAN  (Q16695), H31_ENCCU   (Q8SS77), H3L_ENCCU   (Q8SQP3), 
H3V1_DICDI  (Q54F38), H3V2_DICDI  (Q54Z07)
» more

'Partial' sequences
21 sequences

H32_TETAM   (P69110), H32_TETAU   (P69111), H32_TETBO   (P17319), 
H32_TETCA   (P69112), H32_TETCU   (P69113), H32_TETEL   (P69114), 
H32_TETFU   (P69115), H32_TETHY   (P69116), H32_TETLE   (P69117), 
H32_TETMA   (P69118), H32_TETMI   (P69119), H32_TETNA   (P69120), 
H32_TETNI   (P69121), H32_TETPA   (P69123), H32_TETPI   (P69124), 
H32_TETPR   (P69122), H32_TETRO   (P69125), H32_TETSO   (P69126), 
H32_TETTR   (P69127), H3_LITVA    (P83864), H3_NARPS    (P80553)
» more

[Detailed view]
135 PDB

1AOI; 1EQZ; 1F66; 1HIO; 1HQ3; 1ID3; 1KX3; 1KX4; 1KX5; 1M18; 1M19; 1M1A; 1P34; 1P3A; 1P3B; 1P3F; 1P3G; 1P3I; 1P3K; 1P3L; 1P3M; 1P3O; 1P3P; 1S32; 1TZY; 1U35; 1ZBB; 1ZLA; 2ARO; 2CV5; 2F8N; 2FJ7; 2HIO; 2HUE; 2IO5; 2L5A; 2LY8; 2NQB; 2NZD; 2PYO; 2YFV; 2YFW; 3AFA; 3AN2; 3AV1; 3AV2; 3AYW; 3AZE; 3AZF; 3AZG; 3AZH; 3AZI; 3AZJ; 3AZK; 3AZL; 3AZM; 3AZN; 3B6F; 3B6G; 3C1B; 3C1C; 3C9K; 3KUY; 3KWQ; 3KXB; 3LEL; 3LJA; 3LZ0; 3LZ1; 3MGP; 3MGQ; 3MGR; 3MGS; 3MNN; 3MVD; 3NQJ; 3NQU; 3O62; 3R45; 3REH; 3REI; 3REJ; 3REK; 3REL; 3TU4; 3UT9; 3UTA; 3UTB; 3W96; 3W97; 3W98; 3W99; 3WA9; 3WAA; 3WKJ; 3WTP; 3X1S; 3X1T; 3X1U; 3X1V; 4EO5; 4H9N; 4H9O; 4H9P; 4H9Q; 4H9R; 4H9S; 4HGA; 4J8U; 4J8V; 4J8W; 4J8X; 4JJN; 4KGC; 4KUD; 4LD9; 4QLC; 4R8P; 4UUZ; 4WU8; 4WU9; 4X23; 4XZQ; 4YS3; 4Z66; 4ZBJ; 5BNV; 5BNX; 5BO0; 5BS7; 5BSA; 5C3I; 5CPI; 5CPJ; 5CPK
» more

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