Entry: PS00969

General information about the entry
Entry name ANTENNA_COMP_BETA
Accession number PS00969
Entry type PATTERN
Date JUN-1994 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00748
Name and characterization of the entry
DescriptionAntenna complexes beta subunits signature.
Pattern [EQ]-x(4)-[HGQ]-x(5)-[GSTA]-x(3)-[FYV]-x(3)-[AG]-x(2)-[AV]-H-x(7)-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 35 hits in 35 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 34 hits in 34 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 97.14 %
  • Recall (true hits / (true hits + false negatives)): 97.14 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
LHB1_HALHL  (P80104), LHB1_RHOAC  (P35094), LHB1_RHOCA  (P02950), 
LHB1_RHOMO  (P95673), LHB1_RHOPA  (P35106), LHB1_RHOS4  (Q3J1A3), 
LHB1_RHOSH  (P0C0Y1), LHB1_RHOTE  (P80590), LHB1_RUBGE  (P0DJO1), 
LHB1_RUBGI  (I0HUL8), LHB2_HALHL  (P80105), LHB2_RHOAC  (P35095), 
LHB2_RHOCA  (P07368), LHB2_RHOMO  (P95674), LHB2_RHOPA  (P35107), 
LHB2_RHOS4  (Q3J145), LHB2_RHOSH  (P0C0Y2), LHB2_RHOSU  (P95654), 
LHB2_RHOTE  (P80591), LHB3_RHOAC  (P35096), LHB3_RHOPA  (P35108), 
LHB3_RUBGE  (P72281), LHB4_RHOAC  (P35097), LHB4_RHOPA  (P35109), 
LHB5_RHOAC  (P26790), LHB6_RHOAC  (P35098), LHB7_RHOAC  (P35099), 
LHB_CHLAA   (P09927), LHB_RHOMA   (P80260), LHB_RHORT   (Q2RQ23), 
LHB_RHORU   (P0C190), LHB_RHOTE   (P80587), LHB_RHOVI   (P04124), 
LHB_ROSDO   (P26274)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LHB2_ECTHL  (P11696)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
LHB1_ECTHL  (P80106)
False positive hits (sequences which do not belong to the set under consideration):
LOZEN_DROME (Q9W349)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1DX7; 1IJD; 1JO5; 1KZU; 1LGH; 1NKZ; 1NW0; 1WRG; 2FKW;

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