Entry: PS00983

General information about the entry
Entry name LY6_UPAR
Accession number PS00983
Entry type PATTERN
Date JUN-1994 (CREATED); JUN-1994 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00756
Name and characterization of the entry
DescriptionLy-6 / u-PAR domain signature.
Pattern [EQR]-C-[LIVMFYAH]-x-C-x(5,8)-C-x(3,8)-[EDNQSTV]-C-{C}-x(5)-C- x(12,24)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 50 hits in 34 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 50 hits in 34 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 48
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 51.02 %
Comments
  • Taxonomic range: Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 3
  • `Interesting' site in the pattern: 2,disulfide
  • `Interesting' site in the pattern: 5,disulfide
  • `Interesting' site in the pattern: 7,disulfide
  • `Interesting' site in the pattern: 10,disulfide
  • `Interesting' site in the pattern: 13,disulfide
  • `Interesting' site in the pattern: 15,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CD59_AOTTR  (P51447), CD59_CALSQ  (P46657), CD59_CHLAE  (Q28216), 
CD59_HUMAN  (P13987), CD59_MACFA  (Q8SQ46), CD59_PAPSP  (Q28785), 
CD59_PIG    (O62680), CD59_PONAB  (Q5R510), CD59_RAT    (P27274), 
CD59_SHV21  (Q00996), GML_HUMAN   (Q99445), HDBP1_MOUSE (Q9D1N2), 
LY6A_MOUSE  (P05533), LY6C1_MOUSE (P0CW02), LY6C2_MOUSE (P0CW03), 
LY6D_BOVIN  (Q148C3), LY6D_HUMAN  (Q14210), LY6D_MOUSE  (P35459), 
LY6F_MOUSE  (P35460), LY6G_MOUSE  (P35461), LY6I_MOUSE  (Q9WU67), 
LYPD2_HUMAN (Q6UXB3), LYPD5_HUMAN (Q6UWN5), LYPD5_MOUSE (Q9D7Z7), 
PSCA_MOUSE  (P57096), SLUR1_MOUSE (Q9Z0K7), UPAR_AOTTR  (Q9GK77), 
UPAR_BOVIN  (Q05588), UPAR_CHLAE  (Q9GK79), UPAR_HUMAN  (Q03405), 
UPAR_MACFA  (Q9GK78), UPAR_MOUSE  (P35456), UPAR_PANTR  (Q9GK80), 
UPAR_RAT    (P49616)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CD177_HUMAN (Q8N6Q3), CD59A_MOUSE (O55186), CD59B_MOUSE (P58019), 
CD59_RABIT  (O77541), CD59_SAISC  (P47777), LPD6B_HUMAN (Q8NI32), 
LPD6B_MOUSE (Q9D7F2), LY65B_HUMAN (Q8NDX9), LY65B_MOUSE (Q8K1T4), 
LY65B_RAT   (Q6MG53), LY65C_CANFA (Q9XSV5), LY65C_HUMAN (Q5SRR4), 
LY65C_MACMU (Q863H0), LY65C_MOUSE (Q8K1T5), LY65C_RAT   (Q8CHN2), 
LY66C_BOVIN (A0JNL5), LY66C_HUMAN (O95867), LY66C_MOUSE (Q9Z1Q4), 
LY66D_HUMAN (O95868), LY66D_MOUSE (Q9Z1Q3), LY66D_RAT   (Q6MG58), 
LY6E_CHICK  (Q90986), LY6E_HUMAN  (Q16553), LY6E_MOUSE  (Q64253), 
LY6H_HUMAN  (O94772), LY6H_MOUSE  (Q9WUC3), LYPD1_HUMAN (Q8N2G4), 
LYPD1_MOUSE (Q8BLC3), LYPD1_RAT   (Q66H42), LYPD2_MOUSE (Q9DD23), 
LYPD3_HUMAN (O95274), LYPD3_MOUSE (Q91YK8), LYPD3_RAT   (O55162), 
LYPD4_BOVIN (Q32LD3), LYPD4_HUMAN (Q6UWN0), LYPD4_MOUSE (Q8BVP6), 
PSCA_HUMAN  (O43653), SACA4_BOVIN (Q32PB3), SACA4_HUMAN (Q8TDM5), 
SACA4_MOUSE (Q80ZQ0), SLUR1_HUMAN (P55000), SSLP1_BOVIN (P83107), 
SSLP1_MOUSE (Q3UN54), SSLP1_PIG   (P83106), TX101_CRIGR (Q7TQN2), 
TX101_HUMAN (Q9BY14), TX101_MOUSE (Q9JMI7), TX101_RAT   (Q924B5)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CD59_SHEEP  (P58020)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1CDQ; 1CDR; 1CDS; 1ERG; 1ERH; 1YWH; 2FD6; 2I9B; 2J8B; 2OFS; 2UWR; 2UX2; 3BT1; 3BT2; 3LAQ; 3U73; 3U74;

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