Entry: PS01000

General information about the entry
Entry name SDH_CYT_1
Accession number PS01000
Entry type PATTERN
Date JUN-1994 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00767
Name and characterization of the entry
DescriptionSuccinate dehydrogenase cytochrome b subunit signature 1.
Pattern R-P-[LIVMT]-x(3)-[LIVM]-x(6)-[LIVMWPK]-x(4)-S-x(2)-H-R-x-[ST].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 23 hits in 23 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 23 hits in 23 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.46 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 11,heme(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
C560_BOVIN  (P35720), C560_CAEBR  (P41955), C560_CAEEL  (P41956), 
C560_CHOCR  (P48934), C560_CRIGR  (P70097), C560_CYACA  (P48935), 
C560_HUMAN  (Q99643), C560_MARPO  (P35721), C560_MOUSE  (Q9CZB0), 
C560_PIG    (D0VWV4), C560_PORPU  (P80478), C560_RECAM  (P80481), 
DHSC_COXBU  (P51055), DHSC_ECO57  (P69055), DHSC_ECOLI  (P69054), 
DHSC_RICBR  (Q1RHB5), DHSC_RICFE  (Q4UKC1), DHSC_RICPR  (P41085), 
DHSC_RICTY  (Q68XP1), DHSC_SALTI  (P63726), DHSC_SALTY  (P63725), 
SDH3_YEAST  (P33421), YM07_YEAST  (Q04487)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
C560_DICDI  (Q8T2T5), DHSC_PARDE  (Q59659), DHSC_RICCN  (Q92J99)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1NEK; 1NEN; 1ORZ; 1PB4; 1ZOY; 1ZP0; 2ACZ; 2AD0; 2WDQ; 2WDR; 2WDV; 2WP9; 2WS3; 2WU2; 2WU5; 3ABV; 3AE1; 3AE2; 3AE3; 3AE4; 3AE5; 3AE6; 3AE7; 3AE8; 3AE9; 3AEA; 3AEB; 3AEC; 3AED; 3AEE; 3AEF; 3AEG; 3SFD; 3SFE;

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