Entry: PS01005

General information about the entry
Entry name FORMATE_NITRITE_TP_1
Accession number PS01005
Entry type PATTERN
Date JUN-1994 (CREATED); JUL-1998 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00769
Name and characterization of the entry
DescriptionFormate and nitrite transporters signature 1.
Pattern [LIVMA]-[LIVMY]-x-G-[GSTA]-[DES]-L-[FI]-[TN]-[GS].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 17 hits in 17 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 13 hits in 13 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 4 hits in 4 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 76.47 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
FDHC_METFO  (P35839), FDHC_METTF  (Q50568), FOCA_ECO57  (P0AC25), 
FOCA_ECOL6  (P0AC24), FOCA_ECOLI  (P0AC23), FOCA_HAEIN  (P43756), 
FOCB_ECOLI  (P77733), NIRC_ECOLI  (P0AC26), NIRC_SALTY  (P25926), 
NIRC_SHIFL  (P0AC27), YHA8_YEAST  (P38750), YRHG_BACSU  (O05399), 
YWCJ_BACSU  (P39608)
False positive hits (sequences which do not belong to the set under consideration):
SEM3E_CHICK (O42237), THADA_CANFA (A8C750), THADA_CHLAE (A8C752), 
THADA_HUMAN (Q6YHU6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 3KCU; 3KCV;

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