PROSITE entry PS01022

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	PTR2_1
Accession [info]	PS01022
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00784

Name and characterization of the entry

Description [info]	PTR2 family proton/oligopeptide symporters signature 1.
Pattern [info]	[GA]-[GAS]-[LIVMFYWA]-[LIVM]-[GAS]-D-x-[LIVMFYWT]-[LIVMFYW]-G-x(3)-[TAV]- [IV]-x(3)-[GSTAV]-x-[LIVMF]-x(3)-[GA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.

Total number of hits	78 in 78 different sequences
Number of true positive hits	78 in 78 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	39
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	66.67 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

78 sequences

DTPA_CHRVO  (Q7NRM5), DTPA_CITK8  (A8AH15), DTPA_CROTZ  (C9Y3M8),

DTPA_ECO57  (Q8X651), DTPA_ECOL6  (Q8FH91), DTPA_ECOLI  (P77304), 
DTPA_EDWTE  (D0Z7W2), DTPA_ENT38  (A4W9W3), DTPA_ERWP6  (D2TBH1), 
DTPA_KLEP3  (B5XWP3), DTPA_PECCP  (C6DH09), DTPA_PROMH  (B4EY98), 
DTPA_SALTI  (Q8Z6Q5), DTPA_SALTY  (Q8ZPM6), DTPA_SERP5  (A8GDZ4), 
DTPB_ECOLI  (P36837), DTPB_PHOAA  (B6VMU9), DTPB_PHOLU  (Q8GFA2), 
DTPB_SHIDS  (Q32AW5), DTPB_XENBS  (D3V3D1), DTPC_ECOLI  (P39276), 
DTPD_CITK8  (A8AJB3), DTPD_CITRI  (D2TNL4), DTPD_ECO57  (Q8X9D3), 
DTPD_ECOLI  (P75742), DTPD_KLEP3  (B5XZE5), DTPD_KLEP7  (A6T6E2), 
DTPD_SALCH  (Q57RM6), DTPD_SALPC  (C0PWD2), DTPD_SALT1  (D0ZQC5), 
DTPD_SALTY  (Q7CQY0), DTPD_SHIFL  (Q83S84), DTPT_LACHE  (O07380), 
DTPT_LACLA  (P0C2U2), DTPT_LACLC  (P0C2U3), DTPT_LACLM  (A2RMA8), 
PEPT1_CAEEL (Q21219), PEPT1_DROME (P91679), PEPT2_CAEEL (Q17758), 
PEPT3_CAEEL (O01840), PEPT_YERP4  (A0A2R9TD79), PTR10_ARATH (Q9SK96), 
PTR11_ARATH (Q9SK99), PTR13_ARATH (Q9LFX9), PTR16_ARATH (Q93VV5), 
PTR17_ARATH (Q93Z20), PTR1_ARATH  (Q9M390), PTR22_ARATH (Q8VZE2), 
PTR23_ARATH (Q0WSZ6), PTR24_ARATH (Q8RX67), PTR26_ARATH (Q84WG0), 
PTR27_ARATH (Q9SZY4), PTR28_ARATH (P0CI03), PTR2_ARATH  (P46032), 
PTR2_CANAX  (P46030), PTR2_SCHPO  (Q9P380), PTR2_YEAST  (P32901), 
PTR39_ARATH (Q9M175), PTR40_ARATH (Q9M174), PTR41_ARATH (Q9M173), 
PTR42_ARATH (Q9M172), PTR45_ARATH (Q9M331), PTR46_ARATH (Q9M1I2), 
PTR49_ARATH (Q9LYR6), PTR5_ARATH  (Q9LFB8), PTR7_ARATH  (Q05085), 
PTR9_ARATH  (Q0WP01), S15A1_CANLF (Q8WMX5), S15A1_HUMAN (P46059), 
S15A1_MOUSE (Q9JIP7), S15A1_RABIT (P36836), S15A1_RAT   (P51574), 
S15A2_DANRE (B0S6T2), S15A2_HUMAN (Q16348), S15A2_MOUSE (Q9ES07), 
S15A2_RABIT (P46029), S15A2_RAT   (Q63424), YCLF_BACSU  (P94408)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

39 sequences

DTPA_YERPE  (Q0WEG0), DTPB_AERHH  (A0KMY1), DTPB_ALIFM  (B5FDK5),

DTPB_EDWTE  (D0ZGL2), DTPB_SALTY  (Q8ZLD6), DTPB_YERE8  (A1JRI8), 
PTR12_ARATH (Q8VYE4), PTR14_ARATH (Q9LQL2), PTR15_ARATH (Q56XQ6), 
PTR18_ARATH (Q9SX20), PTR19_ARATH (Q8H157), PTR20_ARATH (Q9CAR9), 
PTR21_ARATH (Q8RX77), PTR25_ARATH (Q9C7U1), PTR29_ARATH (O80436), 
PTR30_ARATH (Q8VZR7), PTR31_ARATH (Q9SRI2), PTR32_ARATH (Q8LPL2), 
PTR33_ARATH (Q9LVE0), PTR34_ARATH (Q9LSF0), PTR35_ARATH (Q9LSE8), 
PTR36_ARATH (Q3EAQ5), PTR37_ARATH (Q9M1E2), PTR38_ARATH (Q9M1E1), 
PTR3_ARATH  (Q9FNL7), PTR43_ARATH (Q9M171), PTR44_ARATH (Q944G5), 
PTR47_ARATH (Q8GXN2), PTR48_ARATH (Q9LYD5), PTR4_ARATH  (Q9FNL8), 
PTR50_ARATH (Q9LFR1), PTR51_ARATH (Q3E9B5), PTR52_ARATH (Q3E8X3), 
PTR53_ARATH (Q9LV10), PTR54_ARATH (Q9FM20), PTR6_ARATH  (Q9M817), 
S15A3_HUMAN (Q8IY34), S15A3_MOUSE (Q8BPX9), S15A3_RAT   (Q924V4)

» more

PDB
[Detailed view]

30 PDB

4OH3; 4Q65; 4W6V; 5A2N; 5A2O; 6GS1; 6GS4; 6GS7; 7NQK; 7PMW; 7PMX; 7PMY; 7PN1; 7Q0L; 7Q0M; 7ZC2; 8B17; 8B18; 8B19; 8B1A; 8B1B; 8B1C; 8B1D; 8B1E; 8B1F; 8B1G; 8B1H; 8B1I; 8B1J; 8B1K
» more