PROSITE entry PS01022

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General information about the entry

Entry name [info]	PTR2_1
Accession [info]	PS01022
Entry type [info]	PATTERN
Date [info]	01-JUN-1994 CREATED; 01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00784

Name and characterization of the entry

Description [info]	PTR2 family proton/oligopeptide symporters signature 1.
Pattern [info]	[GA]-[GAS]-[LIVMFYWA]-[LIVM]-[GAS]-D-x-[LIVMFYWT]-[LIVMFYW]-G-x(3)-[TAV]- [IV]-x(3)-[GSTAV]-x-[LIVMF]-x(3)-[GA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	78 in 78 different sequences
Number of true positive hits	78 in 78 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	39
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	66.67 %

Comments [info]

Taxonomic range [info]	Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

78 sequences

DTPA_CHRVO  (Q7NRM5), DTPA_CITK8  (A8AH15), DTPA_CROTZ  (C9Y3M8),

DTPA_ECO57  (Q8X651), DTPA_ECOL6  (Q8FH91), DTPA_ECOLI  (P77304), 
DTPA_EDWPI  (D0Z7W2), DTPA_ENT38  (A4W9W3), DTPA_ERWP6  (D2TBH1), 
DTPA_KLEP3  (B5XWP3), DTPA_PECCP  (C6DH09), DTPA_PROMH  (B4EY98), 
DTPA_SALTI  (Q8Z6Q5), DTPA_SALTY  (Q8ZPM6), DTPA_SERP5  (A8GDZ4), 
DTPB_ECOLI  (P36837), DTPB_PHOAA  (B6VMU9), DTPB_PHOLU  (Q8GFA2), 
DTPB_SHIDS  (Q32AW5), DTPB_XENBS  (D3V3D1), DTPC_ECOLI  (P39276), 
DTPD_CITK8  (A8AJB3), DTPD_CITRI  (D2TNL4), DTPD_ECO57  (Q8X9D3), 
DTPD_ECOLI  (P75742), DTPD_KLEP3  (B5XZE5), DTPD_KLEP7  (A6T6E2), 
DTPD_SALCH  (Q57RM6), DTPD_SALPC  (C0PWD2), DTPD_SALT1  (D0ZQC5), 
DTPD_SALTY  (Q7CQY0), DTPD_SHIFL  (Q83S84), DTPT_LACHE  (O07380), 
DTPT_LACLA  (P0C2U2), DTPT_LACLC  (P0C2U3), DTPT_LACLM  (A2RMA8), 
PEPT1_CAEEL (Q21219), PEPT1_DROME (P91679), PEPT2_CAEEL (Q17758), 
PEPT3_CAEEL (O01840), PEPT_YERP4  (A0A2R9TD79), PTR10_ARATH (Q9SK96), 
PTR11_ARATH (Q9SK99), PTR13_ARATH (Q9LFX9), PTR16_ARATH (Q93VV5), 
PTR17_ARATH (Q93Z20), PTR1_ARATH  (Q9M390), PTR22_ARATH (Q8VZE2), 
PTR23_ARATH (Q0WSZ6), PTR24_ARATH (Q8RX67), PTR26_ARATH (Q84WG0), 
PTR27_ARATH (Q9SZY4), PTR28_ARATH (P0CI03), PTR2_ARATH  (P46032), 
PTR2_CANAX  (P46030), PTR2_SCHPO  (Q9P380), PTR2_YEAST  (P32901), 
PTR39_ARATH (Q9M175), PTR40_ARATH (Q9M174), PTR41_ARATH (Q9M173), 
PTR42_ARATH (Q9M172), PTR45_ARATH (Q9M331), PTR46_ARATH (Q9M1I2), 
PTR49_ARATH (Q9LYR6), PTR5_ARATH  (Q9LFB8), PTR7_ARATH  (Q05085), 
PTR9_ARATH  (Q0WP01), S15A1_CANLF (Q8WMX5), S15A1_HUMAN (P46059), 
S15A1_MOUSE (Q9JIP7), S15A1_RABIT (P36836), S15A1_RAT   (P51574), 
S15A2_DANRE (B0S6T2), S15A2_HUMAN (Q16348), S15A2_MOUSE (Q9ES07), 
S15A2_RABIT (P46029), S15A2_RAT   (Q63424), YCLF_BACSU  (P94408)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

UniProtKB/Swiss-Prot
False negative sequences

39 sequences

DTPA_YERPE  (Q0WEG0), DTPB_AERHH  (A0KMY1), DTPB_ALIFM  (B5FDK5),

DTPB_EDWPI  (D0ZGL2), DTPB_SALTY  (Q8ZLD6), DTPB_YERE8  (A1JRI8), 
PTR12_ARATH (Q8VYE4), PTR14_ARATH (Q9LQL2), PTR15_ARATH (Q56XQ6), 
PTR18_ARATH (Q9SX20), PTR19_ARATH (Q8H157), PTR20_ARATH (Q9CAR9), 
PTR21_ARATH (Q8RX77), PTR25_ARATH (Q9C7U1), PTR29_ARATH (O80436), 
PTR30_ARATH (Q8VZR7), PTR31_ARATH (Q9SRI2), PTR32_ARATH (Q8LPL2), 
PTR33_ARATH (Q9LVE0), PTR34_ARATH (Q9LSF0), PTR35_ARATH (Q9LSE8), 
PTR36_ARATH (Q3EAQ5), PTR37_ARATH (Q9M1E2), PTR38_ARATH (Q9M1E1), 
PTR3_ARATH  (Q9FNL7), PTR43_ARATH (Q9M171), PTR44_ARATH (Q944G5), 
PTR47_ARATH (Q8GXN2), PTR48_ARATH (Q9LYD5), PTR4_ARATH  (Q9FNL8), 
PTR50_ARATH (Q9LFR1), PTR51_ARATH (Q3E9B5), PTR52_ARATH (Q3E8X3), 
PTR53_ARATH (Q9LV10), PTR54_ARATH (Q9FM20), PTR6_ARATH  (Q9M817), 
S15A3_HUMAN (Q8IY34), S15A3_MOUSE (Q8BPX9), S15A3_RAT   (Q924V4)

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PDB
[Detailed view]

34 PDB

4OH3; 4Q65; 4W6V; 5A2N; 5A2O; 6GS1; 6GS4; 6GS7; 7NQK; 7PMW; 7PMX; 7PMY; 7PN1; 7Q0L; 7Q0M; 7ZC2; 8B17; 8B18; 8B19; 8B1A; 8B1B; 8B1C; 8B1D; 8B1E; 8B1F; 8B1G; 8B1H; 8B1I; 8B1J; 8B1K; 9BIR; 9BIS; 9BIT; 9BIU
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