Entry: PS01037

General information about the entry
Entry name SBP_BACTERIAL_1
Accession number PS01037
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00796
Name and characterization of the entry
DescriptionBacterial extracellular solute-binding proteins, family 1 signature.
Pattern [GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)- [LIVMF]-x-[KNDE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 49 hits in 49 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 38 hits in 38 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 11 hits in 11 different sequences
  • Number of known missed hits: 42
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 77.55 %
  • Recall (true hits / (true hits + false negatives)): 47.50 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
FBPA_HAEIN  (P35755), FBPA_NEIMA  (P0A0Y3), FBPA_NEIMB  (P0A0Y4), 
FBPA_SERMA  (P21408), FBP_NEIGO   (P17259), MALE_ECO57  (P0AEY0), 
MALE_ECOLI  (P0AEX9), MALE_ENTAE  (P18815), MALE_PYRAB  (Q9V297), 
MALE_PYRFU  (P58300), MALE_SALTY  (P19576), MALX_STRPN  (P59213), 
MALX_STRR6  (P59214), MSME_STRMU  (Q00749), THIB_ECOLI  (P31550), 
THIB_HAEIN  (P44984), UGPB_ECO57  (P0AG81), UGPB_ECOK1  (A1AGY4), 
UGPB_ECOL5  (Q0TC07), UGPB_ECOL6  (Q8CVL9), UGPB_ECOLI  (P0AG80), 
UGPB_ECOUT  (Q1R5H5), UGPB_ERWCT  (Q6CZ31), UGPB_SALCH  (Q57IS0), 
UGPB_SALPA  (Q5PJK8), UGPB_SALTI  (Q8XG55), UGPB_SALTY  (Q7CPK0), 
UGPB_SHIDS  (Q32AT3), UGPB_SHIF8  (Q0SZL9), UGPB_SHIFL  (Q83PU5), 
UGPB_YERE8  (A1JID7), UGPB_YERPA  (Q1CBH5), UGPB_YERPE  (Q7CKV7), 
UGPB_YERPN  (Q1CNC9), UGPB_YERPS  (Q66FU7), Y2784_BRUAB (Q578M8), 
Y2991_BRUA2 (Q2YKZ9), Y3748_BRUSU (Q8FVS7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AGLE_RHIME  (Q9Z3R5), ARAN_BACHD  (Q9KEE7), ARAN_BACSU  (P94528), 
CYCB_BACSU  (O07009), FUTA1_SYNY3 (P72827), FUTA2_SYNY3 (Q55835), 
IDIA_SYNE7  (Q31L64), IDIA_SYNP6  (Q5N0R0), IDIA_THEEB  (Q8DLH9), 
LACE_RHIRD  (P29822), LPQY_MYCTU  (Q7D8J9), MDXE_BACSU  (O06989), 
MSME_BACSU  (O34335), P5217_PSEAE (Q9HTX3), PHND_MYCS2  (A0QQ71), 
PHNS_SALCH  (Q57SD5), PHNS_SALPA  (Q5PFQ8), PHNS_SALTI  (Q8Z8W7), 
PHNS_SALTY  (P96062), SP39_BRUAB  (O06875), SP39_BRUME  (Q8YCE2), 
SP39_BRUSU  (Q8FVX5), SP39_RHILO  (Q98H33), SP39_RHIME  (Q92KZ7), 
THIB_BRUA2  (Q2YLW8), THIB_BRUAB  (Q57BC4), THIB_BRUME  (Q8YJ02), 
THIB_BRUSU  (Q8FYV1), UE38_DEIRA  (Q9RUE8), UGPB_AGRT5  (Q8UB32), 
UGPB_BRUA2  (Q2YKR5), UGPB_BRUAB  (Q578E6), UGPB_BRUME  (Q8YCA7), 
UGPB_BRUSU  (Q8FW10), UGPB_RHIME  (Q926H8), Y1039_PYRHO (O58758), 
Y1214_PYRHO (O58969), Y4OP_RHISN  (P55601), YCJN_ECOLI  (P76042), 
YESO_BACSU  (O31518), YTCQ_BACSU  (Q795R2), YURO_BACSU  (O32156)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
MALE_KLEPN  (Q05564), MALE_PHOLU  (P41130)
False positive hits (sequences which do not belong to the set under consideration):
CG031_MOUSE (Q9D5Y0), HEM1_GEOKA  (Q5KWK4), HEM1_GEOTN  (A4IRG7), 
HEM1_SOLUE  (Q022E5), HUM6_CAEBR  (Q622K8), MYO7A_AEDAE (Q17LW0), 
MYO7A_DROME (Q9V3Z6), MYO7A_DROPS (Q29P71), RT29_BOVIN  (P82922), 
VATB_HYPBU  (A2BKX5), VG37_BPK3   (Q38394)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A7L; 1ANF; 1D9V; 1DMB; 1ELJ; 1EZ9; 1EZO; 1EZP; 1FQA; 1FQB; 1FQC; 1FQD; 1HSJ; 1IUD; 1JVX; 1JVY; 1JW4; 1JW5; 1LAX; 1LLS; 1MDP; 1MDQ; 1MG1; 1MH3; 1MH4; 1MPB; 1MPC; 1MPD; 1MRP; 1N3W; 1N3X; 1NL5; 1NMU; 1NNF; 1OMP; 1PEB; 1QVS; 1QW0; 1R1N; 1R6Z; 1SVX; 1T0K; 1XC1; 1XVY; 1Y4C; 1YTV; 1ZIU; 1ZJL; 1ZKB; 1ZMG; 2D21; 2H25; 2KLF; 2NVU; 2O68; 2O69; 2O6A; 2OBG; 2OK2; 2QRY; 2R6G; 2V93; 2VGQ; 2XD2; 2XD3; 2XZ3; 2ZXT; 3A3C; 3C4M; 3CSB; 3CSG; 3DM0; 3EHS; 3EHT; 3EHU; 3F5F; 3G7V; 3G7W; 3H3G; 3H4Z; 3HPI; 3HST; 3IO4; 3IO6; 3IOR; 3IOT; 3IOU; 3IOV; 3IOW; 3JYR; 3KJT; 3KN7; 3KN8; 3L2J; 3LBS; 3LC8; 3MBP; 3MP1; 3MP6; 3MP8; 3MQ9; 3N94; 3O3U; 3OAI; 3OD7; 3ODB; 3OSQ; 3OSR; 3PGF; 3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3PY7; 3Q25; 3Q26; 3Q27; 3Q28; 3Q29; 3RLF; 3RUM; 3SER; 3SES; 3SET; 3SEU; 3SEV; 3SEW; 3SEX; 3SEY; 3TYH; 3VD8; 3VFJ; 4AQ4; 4B3N; 4DXB; 4DXC; 4EGC; 4EXK; 4FE8; 4FEB; 4FEC; 4FED; 4GIZ; 4GLI; 4MBP;

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