Entry: PS01037

General information about the entry

Entry name [info] SBP_BACTERIAL_1
Accession [info] PS01037
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00796

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 1 signature.
Pattern [info]
[GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)-
[LIVMF]-x-[KNDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 49 in 49 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits 0
Number of false positive hits 11 in 11 different sequences
Number of false negative sequences 43
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 77.55 %
Recall (true positives / (true positives + false negatives)) 46.91 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

FBPA_HAEIN  (P35755    ), FBPA_NEIMA  (P0A0Y3    ), FBPA_NEIMB  (P0A0Y4    ), 
FBPA_SERMA  (P21408    ), FBP_NEIGO   (P17259    ), MALE_ECO57  (P0AEY0    ), 
MALE_ECOLI  (P0AEX9    ), MALE_ENTAE  (P18815    ), MALE_PYRAB  (Q9V297    ), 
MALE_PYRFU  (P58300    ), MALE_SALTY  (P19576    ), MALX_STRPN  (P59213    ), 
MALX_STRR6  (P59214    ), MSME_STRMU  (Q00749    ), THIB_ECOLI  (P31550    ), 
THIB_HAEIN  (P44984    ), UGPB_ECO57  (P0AG81    ), UGPB_ECOK1  (A1AGY4    ), 
UGPB_ECOL5  (Q0TC07    ), UGPB_ECOL6  (Q8CVL9    ), UGPB_ECOLI  (P0AG80    ), 
UGPB_ECOUT  (Q1R5H5    ), UGPB_PECAS  (Q6CZ31    ), UGPB_SALCH  (Q57IS0    ), 
UGPB_SALPA  (Q5PJK8    ), UGPB_SALTI  (Q8XG55    ), UGPB_SALTY  (Q7CPK0    ), 
UGPB_SHIDS  (Q32AT3    ), UGPB_SHIF8  (Q0SZL9    ), UGPB_SHIFL  (Q83PU5    ), 
UGPB_YERE8  (A1JID7    ), UGPB_YERPA  (Q1CBH5    ), UGPB_YERPE  (Q7CKV7    ), 
UGPB_YERPN  (Q1CNC9    ), UGPB_YERPS  (Q66FU7    ), Y2784_BRUAB (Q578M8    ), 
Y2991_BRUA2 (Q2YKZ9    ), Y3748_BRUSU (Q8FVS7    )
» more

UniProtKB/Swiss-Prot
False negative sequences
43 sequences

AGLE_RHIME  (Q9Z3R5    ), ARAN_BACHD  (Q9KEE7    ), ARAN_BACSU  (P94528    ), 
CYCB_BACSU  (O07009    ), FUTA1_SYNY3 (P72827    ), FUTA2_SYNY3 (Q55835    ), 
IDIA_SYNE7  (Q31L64    ), IDIA_SYNP6  (Q5N0R0    ), IDIA_THEEB  (Q8DLH9    ), 
LACE_RHIRD  (P29822    ), LPQY_MYCTO  (P9WGU8    ), LPQY_MYCTU  (P9WGU9    ), 
MDXE_BACSU  (O06989    ), MSME_BACSU  (O34335    ), P5217_PSEAE (Q9HTX3    ), 
PHND_MYCS2  (A0QQ71    ), PHNS_SALCH  (Q57SD5    ), PHNS_SALPA  (Q5PFQ8    ), 
PHNS_SALTI  (Q8Z8W7    ), PHNS_SALTY  (P96062    ), SP39_BRUAB  (O06875    ), 
SP39_BRUME  (Q8YCE2    ), SP39_BRUSU  (Q8FVX5    ), SP39_RHILO  (Q98H33    ), 
SP39_RHIME  (Q92KZ7    ), THIB_BRUA2  (Q2YLW8    ), THIB_BRUAB  (Q57BC4    ), 
THIB_BRUME  (Q8YJ02    ), THIB_BRUSU  (Q8FYV1    ), UE38_DEIRA  (Q9RUE8    ), 
UGPB_AGRFC  (Q8UB32    ), UGPB_BRUA2  (Q2YKR5    ), UGPB_BRUAB  (Q578E6    ), 
UGPB_BRUME  (Q8YCA7    ), UGPB_BRUSU  (Q8FW10    ), UGPB_RHIME  (Q926H8    ), 
Y1039_PYRHO (O58758    ), Y1214_PYRHO (O58969    ), Y4OP_RHISN  (P55601    ), 
YCJN_ECOLI  (P76042    ), YESO_BACSU  (O31518    ), YTCQ_BACSU  (Q795R2    ), 
YURO_BACSU  (O32156    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

MALE_KLEPN  (Q05564    ), MALE_PHOLU  (P41130    )

		
UniProtKB/Swiss-Prot
False positive sequences
11 sequences

CG031_MOUSE (Q9D5Y0    ), FIB37_BPK3  (Q38394    ), HEM1_GEOKA  (Q5KWK4    ), 
HEM1_GEOTN  (A4IRG7    ), HEM1_SOLUE  (Q022E5    ), HUM6_CAEBR  (Q622K8    ), 
MYO7A_AEDAE (Q17LW0    ), MYO7A_DROME (Q9V3Z6    ), MYO7A_DROPS (Q29P71    ), 
RT29_BOVIN  (P82922    ), VATB_HYPBU  (A2BKX5    )
» more

PDB
[Detailed view]
221 PDB

1A7L; 1ANF; 1D9V; 1DMB; 1ELJ; 1EZ9; 1EZO; 1EZP; 1FQA; 1FQB; 1FQC; 1FQD; 1HSJ; 1IUD; 1JVX; 1JVY; 1JW4; 1JW5; 1LAX; 1LLS; 1MDP; 1MDQ; 1MG1; 1MH3; 1MH4; 1MPB; 1MPC; 1MPD; 1MRP; 1N3W; 1N3X; 1NL5; 1NMU; 1NNF; 1OMP; 1PEB; 1QVS; 1QW0; 1R1N; 1R6Z; 1SVX; 1T0K; 1XC1; 1XVY; 1Y4C; 1YTV; 1ZIU; 1ZJL; 1ZKB; 1ZMG; 2D21; 2H25; 2KLF; 2MV0; 2N44; 2N45; 2NVU; 2O68; 2O69; 2O6A; 2OBG; 2OK2; 2QRY; 2R6G; 2V93; 2VGQ; 2XD2; 2XD3; 2XZ3; 2ZXT; 3A3C; 3C4M; 3CSB; 3CSG; 3D4C; 3DM0; 3EHS; 3EHT; 3EHU; 3F5F; 3G7V; 3G7W; 3H3G; 3H4Z; 3HPI; 3HST; 3IO4; 3IO6; 3IOR; 3IOT; 3IOU; 3IOV; 3IOW; 3JYR; 3KJT; 3KN7; 3KN8; 3L2J; 3LBS; 3LC8; 3MBP; 3MP1; 3MP6; 3MP8; 3MQ9; 3N94; 3O3U; 3OAI; 3OD7; 3ODB; 3OSQ; 3OSR; 3PGF; 3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3PY7; 3Q25; 3Q26; 3Q27; 3Q28; 3Q29; 3RLF; 3RUM; 3SER; 3SES; 3SET; 3SEU; 3SEV; 3SEW; 3SEX; 3SEY; 3TYH; 3VD8; 3VFJ; 3W15; 3WAI; 3WOA; 4AQ4; 4B3N; 4BL8; 4BL9; 4BLA; 4BLB; 4BLD; 4DXB; 4DXC; 4EDQ; 4EGC; 4EXK; 4FE8; 4FEB; 4FEC; 4FED; 4GIZ; 4GLI; 4IFP; 4IKM; 4IRL; 4JBZ; 4JKM; 4KEG; 4KHZ; 4KI0; 4KV3; 4KYC; 4KYD; 4KYE; 4MBP; 4MY2; 4N4X; 4NDZ; 4O2X; 4OGM; 4PE2; 4QSZ; 4QVH; 4R0Y; 4RG5; 4RWF; 4RWG; 4TSM; 4WGI; 4WJV; 4WMS; 4WMT; 4WMU; 4WMV; 4WMW; 4WMX; 4WRN; 4WTH; 4WVG; 4WVH; 4WVI; 4WVJ; 4XA2; 4XAI; 4XAJ; 4XHS; 4XR8; 4XZS; 4XZV; 4YS9; 5AQ9; 5AZ6; 5AZ7; 5AZ8; 5AZ9; 5AZA; 5C7R; 5CBN; 5CL1; 5DFM; 5DIS; 5E7U; 5FSG; 5I69
» more

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