Entry: PS01037

Forthcoming changes to the profile format
General information about the entry

Entry name [info] SBP_BACTERIAL_1
Accession [info] PS01037
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00796

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 1 signature.
Pattern [info]
[GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)-
[LIVMF]-x-[KNDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 49 in 49 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits
Number of false positive hits 11 in 11 different sequences
Number of false negative sequences 43
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 77.55 %
Recall (true positives / (true positives + false negatives)) 46.91 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

FBPA_HAEIN  (P35755), FBPA_NEIMA  (P0A0Y3), FBPA_NEIMB  (P0A0Y4), 
FBPA_SERMA  (P21408), FBP_NEIGO   (P17259), MALE_ECO57  (P0AEY0), 
MALE_ECOLI  (P0AEX9), MALE_ENTAE  (P18815), MALE_PYRAB  (Q9V297), 
MALE_PYRFU  (P58300), MALE_SALTY  (P19576), MALX_STRPN  (P59213), 
MALX_STRR6  (P59214), MSME_STRMU  (Q00749), THIB_ECOLI  (P31550), 
THIB_HAEIN  (P44984), UGPB_ECO57  (P0AG81), UGPB_ECOK1  (A1AGY4), 
UGPB_ECOL5  (Q0TC07), UGPB_ECOL6  (Q8CVL9), UGPB_ECOLI  (P0AG80), 
UGPB_ECOUT  (Q1R5H5), UGPB_PECAS  (Q6CZ31), UGPB_SALCH  (Q57IS0), 
UGPB_SALPA  (Q5PJK8), UGPB_SALTI  (Q8XG55), UGPB_SALTY  (Q7CPK0), 
UGPB_SHIDS  (Q32AT3), UGPB_SHIF8  (Q0SZL9), UGPB_SHIFL  (Q83PU5), 
UGPB_YERE8  (A1JID7), UGPB_YERPA  (Q1CBH5), UGPB_YERPE  (Q7CKV7), 
UGPB_YERPN  (Q1CNC9), UGPB_YERPS  (Q66FU7), Y2784_BRUAB (Q578M8), 
Y2991_BRUA2 (Q2YKZ9), Y3748_BRUSU (Q8FVS7)
» More

UniProtKB/Swiss-Prot
False negative sequences
43 sequences

AGLE_RHIME  (Q9Z3R5), ARAN_BACHD  (Q9KEE7), ARAN_BACSU  (P94528), 
CYCB_BACSU  (O07009), FUTA1_SYNY3 (P72827), FUTA2_SYNY3 (Q55835), 
IDIA_SYNE7  (Q31L64), IDIA_SYNP6  (Q5N0R0), IDIA_THEEB  (Q8DLH9), 
LACE_RHIRD  (P29822), LPQY_MYCTO  (P9WGU8), LPQY_MYCTU  (P9WGU9), 
MDXE_BACSU  (O06989), MSME_BACSU  (O34335), P5217_PSEAE (Q9HTX3), 
PHND_MYCS2  (A0QQ71), PHNS_SALCH  (Q57SD5), PHNS_SALPA  (Q5PFQ8), 
PHNS_SALTI  (Q8Z8W7), PHNS_SALTY  (P96062), SP39_BRUAB  (O06875), 
SP39_BRUME  (Q8YCE2), SP39_BRUSU  (Q8FVX5), SP39_RHILO  (Q98H33), 
SP39_RHIME  (Q92KZ7), THIB_BRUA2  (Q2YLW8), THIB_BRUAB  (Q57BC4), 
THIB_BRUME  (Q8YJ02), THIB_BRUSU  (Q8FYV1), UE38_DEIRA  (Q9RUE8), 
UGPB_AGRT5  (Q8UB32), UGPB_BRUA2  (Q2YKR5), UGPB_BRUAB  (Q578E6), 
UGPB_BRUME  (Q8YCA7), UGPB_BRUSU  (Q8FW10), UGPB_RHIME  (Q926H8), 
Y1039_PYRHO (O58758), Y1214_PYRHO (O58969), Y4OP_RHISN  (P55601), 
YCJN_ECOLI  (P76042), YESO_BACSU  (O31518), YTCQ_BACSU  (Q795R2), 
YURO_BACSU  (O32156)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

MALE_KLEPN  (Q05564), MALE_PHOLU  (P41130)

		
UniProtKB/Swiss-Prot
False positive sequences
11 sequences

CG031_MOUSE (Q9D5Y0), HEM1_GEOKA  (Q5KWK4), HEM1_GEOTN  (A4IRG7), 
HEM1_SOLUE  (Q022E5), HUM6_CAEBR  (Q622K8), MYO7A_AEDAE (Q17LW0), 
MYO7A_DROME (Q9V3Z6), MYO7A_DROPS (Q29P71), RT29_BOVIN  (P82922), 
VATB_HYPBU  (A2BKX5), VG37_BPK3   (Q38394)
» More

PDB
[Detailed view]
165 PDB

1A7L; 1ANF; 1D9V; 1DMB; 1ELJ; 1EZ9; 1EZO; 1EZP; 1FQA; 1FQB; 1FQC; 1FQD; 1HSJ; 1IUD; 1JVX; 1JVY; 1JW4; 1JW5; 1LAX; 1LLS; 1MDP; 1MDQ; 1MG1; 1MH3; 1MH4; 1MPB; 1MPC; 1MPD; 1MRP; 1N3W; 1N3X; 1NL5; 1NMU; 1NNF; 1OMP; 1PEB; 1QVS; 1QW0; 1R1N; 1R6Z; 1SVX; 1T0K; 1XC1; 1XVY; 1Y4C; 1YTV; 1ZIU; 1ZJL; 1ZKB; 1ZMG; 2D21; 2H25; 2KLF; 2NVU; 2O68; 2O69; 2O6A; 2OBG; 2OK2; 2QRY; 2R6G; 2V93; 2VGQ; 2XD2; 2XD3; 2XZ3; 2ZXT; 3A3C; 3C4M; 3CSB; 3CSG; 3DM0; 3EHS; 3EHT; 3EHU; 3F5F; 3G7V; 3G7W; 3H3G; 3H4Z; 3HPI; 3HST; 3IO4; 3IO6; 3IOR; 3IOT; 3IOU; 3IOV; 3IOW; 3JYR; 3KJT; 3KN7; 3KN8; 3L2J; 3LBS; 3LC8; 3MBP; 3MP1; 3MP6; 3MP8; 3MQ9; 3N94; 3O3U; 3OAI; 3OD7; 3ODB; 3OSQ; 3OSR; 3PGF; 3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3PY7; 3Q25; 3Q26; 3Q27; 3Q28; 3Q29; 3RLF; 3RUM; 3SER; 3SES; 3SET; 3SEU; 3SEV; 3SEW; 3SEX; 3SEY; 3TYH; 3VD8; 3VFJ; 3W15; 3WAI; 4AQ4; 4B3N; 4BL8; 4BL9; 4BLA; 4BLB; 4BLD; 4DXB; 4DXC; 4EDQ; 4EGC; 4EXK; 4FE8; 4FEB; 4FEC; 4FED; 4GIZ; 4GLI; 4IFP; 4IKM; 4IRL; 4JBZ; 4KHZ; 4KI0; 4KYC; 4KYD; 4KYE; 4MBP; 4MY2
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission