Entry: PS01037

General information about the entry

Entry name [info] SBP_BACTERIAL_1
Accession [info] PS01037
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00796

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 1 signature.
Pattern [info]
[GAP]-[LIVMFA]-[STAVDN]-x-{H}-x(2)-[GSAV]-[LIVMFY](2)-Y-[ND]-x(3)-
[LIVMF]-x-[KNDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 49 in 49 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits 0
Number of false positive hits 11 in 11 different sequences
Number of false negative sequences 43
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 77.55 %
Recall (true positives / (true positives + false negatives)) 46.91 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

FBPA_HAEIN  (P35755), FBPA_NEIMA  (P0A0Y3), FBPA_NEIMB  (P0A0Y4), 
FBPA_SERMA  (P21408), FBP_NEIGO   (P17259), MALE_ECO57  (P0AEY0), 
MALE_ECOLI  (P0AEX9), MALE_ENTAE  (P18815), MALE_PYRAB  (Q9V297), 
MALE_PYRFU  (P58300), MALE_SALTY  (P19576), MALX_STRPN  (P59213), 
MALX_STRR6  (P59214), MSME_STRMU  (Q00749), THIB_ECOLI  (P31550), 
THIB_HAEIN  (P44984), UGPB_ECO57  (P0AG81), UGPB_ECOK1  (A1AGY4), 
UGPB_ECOL5  (Q0TC07), UGPB_ECOL6  (Q8CVL9), UGPB_ECOLI  (P0AG80), 
UGPB_ECOUT  (Q1R5H5), UGPB_PECAS  (Q6CZ31), UGPB_SALCH  (Q57IS0), 
UGPB_SALPA  (Q5PJK8), UGPB_SALTI  (Q8XG55), UGPB_SALTY  (Q7CPK0), 
UGPB_SHIDS  (Q32AT3), UGPB_SHIF8  (Q0SZL9), UGPB_SHIFL  (Q83PU5), 
UGPB_YERE8  (A1JID7), UGPB_YERPA  (Q1CBH5), UGPB_YERPE  (Q7CKV7), 
UGPB_YERPN  (Q1CNC9), UGPB_YERPS  (Q66FU7), Y2784_BRUAB (Q578M8), 
Y2991_BRUA2 (Q2YKZ9), Y3748_BRUSU (Q8FVS7)
» More

UniProtKB/Swiss-Prot
False negative sequences
43 sequences

AGLE_RHIME  (Q9Z3R5), ARAN_BACHD  (Q9KEE7), ARAN_BACSU  (P94528), 
CYCB_BACSU  (O07009), FUTA1_SYNY3 (P72827), FUTA2_SYNY3 (Q55835), 
IDIA_SYNE7  (Q31L64), IDIA_SYNP6  (Q5N0R0), IDIA_THEEB  (Q8DLH9), 
LACE_RHIRD  (P29822), LPQY_MYCTO  (P9WGU8), LPQY_MYCTU  (P9WGU9), 
MDXE_BACSU  (O06989), MSME_BACSU  (O34335), P5217_PSEAE (Q9HTX3), 
PHND_MYCS2  (A0QQ71), PHNS_SALCH  (Q57SD5), PHNS_SALPA  (Q5PFQ8), 
PHNS_SALTI  (Q8Z8W7), PHNS_SALTY  (P96062), SP39_BRUAB  (O06875), 
SP39_BRUME  (Q8YCE2), SP39_BRUSU  (Q8FVX5), SP39_RHILO  (Q98H33), 
SP39_RHIME  (Q92KZ7), THIB_BRUA2  (Q2YLW8), THIB_BRUAB  (Q57BC4), 
THIB_BRUME  (Q8YJ02), THIB_BRUSU  (Q8FYV1), UE38_DEIRA  (Q9RUE8), 
UGPB_AGRFC  (Q8UB32), UGPB_BRUA2  (Q2YKR5), UGPB_BRUAB  (Q578E6), 
UGPB_BRUME  (Q8YCA7), UGPB_BRUSU  (Q8FW10), UGPB_RHIME  (Q926H8), 
Y1039_PYRHO (O58758), Y1214_PYRHO (O58969), Y4OP_RHISN  (P55601), 
YCJN_ECOLI  (P76042), YESO_BACSU  (O31518), YTCQ_BACSU  (Q795R2), 
YURO_BACSU  (O32156)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

MALE_KLEPN  (Q05564), MALE_PHOLU  (P41130)

		
UniProtKB/Swiss-Prot
False positive sequences
11 sequences

CG031_MOUSE (Q9D5Y0), FIB37_BPK3  (Q38394), HEM1_GEOKA  (Q5KWK4), 
HEM1_GEOTN  (A4IRG7), HEM1_SOLUE  (Q022E5), HUM6_CAEBR  (Q622K8), 
MYO7A_AEDAE (Q17LW0), MYO7A_DROME (Q9V3Z6), MYO7A_DROPS (Q29P71), 
RT29_BOVIN  (P82922), VATB_HYPBU  (A2BKX5)
» More

PDB
[Detailed view]
184 PDB

1A7L; 1ANF; 1D9V; 1DMB; 1ELJ; 1EZ9; 1EZO; 1EZP; 1FQA; 1FQB; 1FQC; 1FQD; 1HSJ; 1IUD; 1JVX; 1JVY; 1JW4; 1JW5; 1LAX; 1LLS; 1MDP; 1MDQ; 1MG1; 1MH3; 1MH4; 1MPB; 1MPC; 1MPD; 1MRP; 1N3W; 1N3X; 1NL5; 1NMU; 1NNF; 1OMP; 1PEB; 1QVS; 1QW0; 1R1N; 1R6Z; 1SVX; 1T0K; 1XC1; 1XVY; 1Y4C; 1YTV; 1ZIU; 1ZJL; 1ZKB; 1ZMG; 2D21; 2H25; 2KLF; 2MV0; 2NVU; 2O68; 2O69; 2O6A; 2OBG; 2OK2; 2QRY; 2R6G; 2V93; 2VGQ; 2XD2; 2XD3; 2XZ3; 2ZXT; 3A3C; 3C4M; 3CSB; 3CSG; 3DM0; 3EHS; 3EHT; 3EHU; 3F5F; 3G7V; 3G7W; 3H3G; 3H4Z; 3HPI; 3HST; 3IO4; 3IO6; 3IOR; 3IOT; 3IOU; 3IOV; 3IOW; 3JYR; 3KJT; 3KN7; 3KN8; 3L2J; 3LBS; 3LC8; 3MBP; 3MP1; 3MP6; 3MP8; 3MQ9; 3N94; 3O3U; 3OAI; 3OD7; 3ODB; 3OSQ; 3OSR; 3PGF; 3PUV; 3PUW; 3PUX; 3PUY; 3PUZ; 3PV0; 3PY7; 3Q25; 3Q26; 3Q27; 3Q28; 3Q29; 3RLF; 3RUM; 3SER; 3SES; 3SET; 3SEU; 3SEV; 3SEW; 3SEX; 3SEY; 3TYH; 3VD8; 3VFJ; 3W15; 3WAI; 3WOA; 4AQ4; 4B3N; 4BL8; 4BL9; 4BLA; 4BLB; 4BLD; 4DXB; 4DXC; 4EDQ; 4EGC; 4EXK; 4FE8; 4FEB; 4FEC; 4FED; 4GIZ; 4GLI; 4IFP; 4IKM; 4IRL; 4JBZ; 4JKM; 4KEG; 4KHZ; 4KI0; 4KV3; 4KYC; 4KYD; 4KYE; 4MBP; 4MY2; 4N4X; 4NDZ; 4O2X; 4R0Y; 4WGI; 4WJV; 4WMS; 4WMT; 4WMU; 4WMV; 4WMW; 4WMX; 4XAI; 4XAJ
» More

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