Entry: PS01040

General information about the entry

Entry name [info] SBP_BACTERIAL_5
Accession [info] PS01040
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); JUL-1999 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00799

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 5 signature.
Pattern [info]
[AG]-x(6,7)-[DNEG]-x(2)-[STAIVE]-[LIVMFYWA]-x-[LIVMFY]-x-[LIVM]-[KR]-
[KRHDE]-[GDN]-[LIVMA]-[KNGSP]-[FW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 42 in 42 different sequences
Number of true positive hits 42 in 42 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 15
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.68 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
42 sequences

ALIA_STRPN  (P35592    ), ALIB_STRPN  (P0A4G0    ), ALIB_STRR6  (P0A4G1    ), 
AMIA_STRPN  (P18791    ), APPA_BACSU  (P42061    ), DDPA_ECOLI  (P76128    ), 
DPPA_ECOLI  (P23847    ), DPPE_BACSU  (P26906    ), GSIB_ECO57  (Q8X6V9    ), 
GSIB_ECOK1  (A1A968    ), GSIB_ECOL5  (Q0TJL8    ), GSIB_ECOL6  (Q8CW88    ), 
GSIB_ECOLI  (P75797    ), GSIB_ECOUT  (Q1RE95    ), GSIB_SALCH  (Q57RB1    ), 
GSIB_SHIBS  (Q323W4    ), GSIB_SHIDS  (Q32IB6    ), GSIB_SHIF8  (Q0T6D2    ), 
GSIB_SHIFL  (Q821B3    ), GSIB_SHISS  (Q3Z3V3    ), HBPA_HAEIN  (P33950    ), 
MPPA_ECOLI  (P77348    ), NIKA_ECOLI  (P33590    ), OPPA_BACSU  (P24141    ), 
OPPA_ECOLI  (P23843    ), OPPA_HAEIN  (P71370    ), OPPA_LACLA  (Q9CEK0    ), 
OPPA_LACLL  (Q07741    ), OPPA_LACLS  (Q02VA9    ), OPPA_SALTY  (P06202    ), 
SAPA_ECOLI  (Q47622    ), SAPA_HAEIN  (P45285    ), SAPA_SALTY  (P36634    ), 
SARA_STRGC  (P31306    ), UF71_DEIRA  (Q9RU24    ), XP55_STRLI  (P06109    ), 
Y1030_BRUAB (Q8VQK3    ), Y1049_BRUA2 (Q2YJK2    ), Y1090_BRUSU (Q8FUX2    ), 
Y210_BRUME  (Q8YDG6    ), Y213_HAEIN  (P44572    ), Y4TO_SINFN  (P55669    )
» more

UniProtKB/Swiss-Prot
False negative sequences
15 sequences

AGPA_RHIME  (Q9X4Y1    ), GSIB_PECAS  (Q6D3B0    ), GSIB_SALPA  (Q5PGP4    ), 
GSIB_SALTI  (Q8Z863    ), GSIB_SALTY  (Q8ZQM3    ), Y1280_MYCTO (P9WGU4    ), 
Y1280_MYCTU (P9WGU5    ), Y1311_MYCBO (P66772    ), Y2948_BRUAB (Q577X5    ), 
Y3164_BRUA2 (Q2YKJ5    ), Y3576_BRUSU (Q8FW84    ), Y3691_BRUME (Q8YC41    ), 
Y4WM_SINFN  (P55691    ), YGIS_ECOLI  (Q46863    ), YHJP_BACSU  (O07570    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

OPPA_LACLC  (P0C2B3    )

		
PDB
[Detailed view]
59 PDB

1B05; 1B0H; 1B1H; 1B2H; 1B32; 1B3F; 1B3G; 1B3H; 1B3L; 1B40; 1B46; 1B4H; 1B4Z; 1B51; 1B52; 1B58; 1B5H; 1B5I; 1B5J; 1B6H; 1B7H; 1B9J; 1DPE; 1DPP; 1JET; 1JEU; 1JEV; 1OLA; 1OLC; 1QKA; 1QKB; 1RKM; 1UIU; 1UIV; 1UQW; 1XOC; 1ZLQ; 2NOO; 2OLB; 2RKM; 3DP8; 3E3K; 3MVW; 3MVX; 3MVY; 3MVZ; 3MW0; 3MZ9; 3MZB; 3O9P; 3QIM; 3TCF; 3TCG; 3TCH; 4DCX; 4DCY; 4I8C; 4I9D; 4TOZ
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission