Entry: PS01040

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General information about the entry

Entry name [info] SBP_BACTERIAL_5
Accession [info] PS01040
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); JUL-1999 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00799

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 5 signature.
Pattern [info]
[AG]-x(6,7)-[DNEG]-x(2)-[STAIVE]-[LIVMFYWA]-x-[LIVMFY]-x-[LIVM]-[KR]-
[KRHDE]-[GDN]-[LIVMA]-[KNGSP]-[FW].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 42 in 42 different sequences
Number of true positive hits 42 in 42 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 15
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 73.68 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
42 sequences

ALIA_STRPN  (P35592), ALIB_STRPN  (P0A4G0), ALIB_STRR6  (P0A4G1), 
AMIA_STRPN  (P18791), APPA_BACSU  (P42061), DDPA_ECOLI  (P76128), 
DPPA_ECOLI  (P23847), DPPE_BACSU  (P26906), GSIB_ECO57  (Q8X6V9), 
GSIB_ECOK1  (A1A968), GSIB_ECOL5  (Q0TJL8), GSIB_ECOL6  (Q8CW88), 
GSIB_ECOLI  (P75797), GSIB_ECOUT  (Q1RE95), GSIB_SALCH  (Q57RB1), 
GSIB_SHIBS  (Q323W4), GSIB_SHIDS  (Q32IB6), GSIB_SHIF8  (Q0T6D2), 
GSIB_SHIFL  (Q821B3), GSIB_SHISS  (Q3Z3V3), HBPA_HAEIN  (P33950), 
MPPA_ECOLI  (P77348), NIKA_ECOLI  (P33590), OPPA_BACSU  (P24141), 
OPPA_ECOLI  (P23843), OPPA_HAEIN  (P71370), OPPA_LACLA  (Q9CEK0), 
OPPA_LACLL  (Q07741), OPPA_LACLS  (Q02VA9), OPPA_SALTY  (P06202), 
SAPA_ECOLI  (Q47622), SAPA_HAEIN  (P45285), SAPA_SALTY  (P36634), 
SARA_STRGC  (P31306), UF71_DEIRA  (Q9RU24), XP55_STRLI  (P06109), 
Y1030_BRUAB (Q8VQK3), Y1049_BRUA2 (Q2YJK2), Y1090_BRUSU (Q8FUX2), 
Y210_BRUME  (Q8YDG6), Y213_HAEIN  (P44572), Y4TO_RHISN  (P55669)
» More

UniProtKB/Swiss-Prot
False negative sequences
15 sequences

AGPA_RHIME  (Q9X4Y1), GSIB_PECAS  (Q6D3B0), GSIB_SALPA  (Q5PGP4), 
GSIB_SALTI  (Q8Z863), GSIB_SALTY  (Q8ZQM3), Y1280_MYCTO (P9WGU4), 
Y1280_MYCTU (P9WGU5), Y1311_MYCBO (P66772), Y2948_BRUAB (Q577X5), 
Y3164_BRUA2 (Q2YKJ5), Y3576_BRUSU (Q8FW84), Y3691_BRUME (Q8YC41), 
Y4WM_RHISN  (P55691), YGIS_ECOLI  (Q46863), YHJP_BACSU  (O07570)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

OPPA_LACLC  (P0C2B3)

		

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