Entry: PS01040

General information about the entry
Entry name SBP_BACTERIAL_5
Accession number PS01040
Entry type PATTERN
Date NOV-1995 (CREATED); JUL-1999 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00799
Name and characterization of the entry
DescriptionBacterial extracellular solute-binding proteins, family 5 signature.
Pattern [AG]-x(6,7)-[DNEG]-x(2)-[STAIVE]-[LIVMFYWA]-x-[LIVMFY]-x-[LIVM]-[KR]- [KRHDE]-[GDN]-[LIVMA]-[KNGSP]-[FW].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 42 hits in 42 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 42 hits in 42 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 14
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 75.00 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ALIA_STRPN  (P35592), ALIB_STRPN  (P0A4G0), ALIB_STRR6  (P0A4G1), 
AMIA_STRPN  (P18791), APPA_BACSU  (P42061), DDPA_ECOLI  (P76128), 
DPPA_ECOLI  (P23847), DPPE_BACSU  (P26906), GSIB_ECO57  (Q8X6V9), 
GSIB_ECOK1  (A1A968), GSIB_ECOL5  (Q0TJL8), GSIB_ECOL6  (Q8CW88), 
GSIB_ECOLI  (P75797), GSIB_ECOUT  (Q1RE95), GSIB_SALCH  (Q57RB1), 
GSIB_SHIBS  (Q323W4), GSIB_SHIDS  (Q32IB6), GSIB_SHIF8  (Q0T6D2), 
GSIB_SHIFL  (Q821B3), GSIB_SHISS  (Q3Z3V3), HBPA_HAEIN  (P33950), 
MPPA_ECOLI  (P77348), NIKA_ECOLI  (P33590), OPPA_BACSU  (P24141), 
OPPA_ECOLI  (P23843), OPPA_HAEIN  (P71370), OPPA_LACLA  (Q9CEK0), 
OPPA_LACLL  (Q07741), OPPA_LACLS  (Q02VA9), OPPA_SALTY  (P06202), 
SAPA_ECOLI  (Q47622), SAPA_HAEIN  (P45285), SAPA_SALTY  (P36634), 
SARA_STRGC  (P31306), UF71_DEIRA  (Q9RU24), XP55_STRLI  (P06109), 
Y1030_BRUAB (Q8VQK3), Y1049_BRUA2 (Q2YJK2), Y1090_BRUSU (Q8FUX2), 
Y210_BRUME  (Q8YDG6), Y213_HAEIN  (P44572), Y4TO_RHISN  (P55669)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AGPA_RHIME  (Q9X4Y1), GSIB_ERWCT  (Q6D3B0), GSIB_SALPA  (Q5PGP4), 
GSIB_SALTI  (Q8Z863), GSIB_SALTY  (Q8ZQM3), Y1280_MYCTU (P66771), 
Y1311_MYCBO (P66772), Y2948_BRUAB (Q577X5), Y3164_BRUA2 (Q2YKJ5), 
Y3576_BRUSU (Q8FW84), Y3691_BRUME (Q8YC41), Y4WM_RHISN  (P55691), 
YGIS_ECOLI  (Q46863), YHJP_BACSU  (O07570)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
OPPA_LACLC  (P0C2B3)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1B05; 1B0H; 1B1H; 1B2H; 1B32; 1B3F; 1B3G; 1B3H; 1B3L; 1B40; 1B46; 1B4H; 1B4Z; 1B51; 1B52; 1B58; 1B5H; 1B5I; 1B5J; 1B6H; 1B7H; 1B9J; 1DPE; 1DPP; 1JET; 1JEU; 1JEV; 1OLA; 1OLC; 1QKA; 1QKB; 1RKM; 1UIU; 1UIV; 1UQW; 1XOC; 1ZLQ; 2NOO; 2OLB; 2RKM; 3DP8; 3E3K; 3MVW; 3MVX; 3MVY; 3MVZ; 3MW0; 3MZ9; 3MZB; 3O9P; 3QIM; 3TCF; 3TCG; 3TCH; 4DCX; 4DCY; 4I8C;

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