Entry: PS01044

Forthcoming changes to the profile format
General information about the entry

Entry name [info] SQUALEN_PHYTOEN_SYN_1
Accession [info] PS01044
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00802

Name and characterization of the entry

Description [info] Squalene and phytoene synthases signature 1.
Pattern [info]
Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 61 in 61 different sequences
Number of true positive hits 58 in 58 different sequences
Number of 'unknown' hits
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 95.08 %
Recall (true positives / (true positives + false negatives)) 89.23 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
58 sequences

BSS_BOTBR   (Q9SDW9), CRTB_ENTAG  (D5KXJ0), CRTB_ESCVU  (P22872), 
CRTB_MYCBO  (P65861), CRTB_MYCTO  (P9WHP2), CRTB_MYCTU  (P9WHP3), 
CRTB_PANAN  (P21683), CRTB_PARSN  (P54975), CRTB_RHOCB  (P17056), 
CRTB_RHOS4  (P54905), CRTB_STRGR  (P54977), CRTB_SYNE7  (P37269), 
CRTB_SYNY3  (P37294), CRTB_THET2  (P37270), CRTM_STAA3  (Q2FDU5), 
CRTM_STAA8  (Q2FV59), CRTM_STAAB  (Q2YWE7), CRTM_STAAC  (Q5HCY8), 
CRTM_STAAE  (O07854), CRTM_STAAM  (Q99R75), CRTM_STAAN  (Q7A3E1), 
CRTM_STAAS  (Q6G6B2), CRTM_STAAU  (A9JQL9), CRTM_STAAW  (Q8NUQ5), 
CRTM_STAHJ  (Q4L976), CRTY_ARTPT  (O07333), FDFT_ARATH  (P53799), 
FDFT_ASHGO  (Q752X9), FDFT_BOVIN  (Q32KR6), FDFT_CANAX  (P78589), 
FDFT_CANGA  (Q9HGZ6), FDFT_CYBJA  (O74165), FDFT_DICDI  (Q54DR1), 
FDFT_HUMAN  (P37268), FDFT_MOUSE  (P53798), FDFT_NEUCR  (Q7S4Z6), 
FDFT_NICBE  (P53800), FDFT_PONAB  (Q5R6U3), FDFT_RAT    (Q02769), 
FDFT_SCHPO  (P36596), FDFT_USTMA  (Q92459), FDFT_YARLI  (Q9Y753), 
FDFT_YEAST  (P29704), LCPS_COLGM  (E3Q717), LCPS_NEUCR  (P37295), 
LCPS_SORMK  (D1Z4K7), LCPS_SPORE  (E6ZZ11), LCPS_USTMA  (Q4P0S6), 
PSY1_SOLLC  (P08196), PSY2_SOLLC  (P37273), PSY_ARATH   (P37271), 
PSY_CAPAN   (P37272), PSY_CUCME   (P49293), PSY_DAUCA   (Q9SSU8), 
PSY_MAIZE   (P49085), PSY_NARPS   (P53797), PSY_ONCHC   (Q52QW5), 
Y4AC_RHISN  (P55350)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BOCS_BOTBR  (G0Y288), BOSS_BOTBR  (G0Y287), CRIT_STRCO  (Q9ACU1), 
LCPS_MUCCL  (Q9UUQ6), PSDS_BOTBR  (G0Y286), Y4AD_RHISN  (P55351), 
YISP_BACSU  (O06728)
» More

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

GEL4_ASPFC  (B0XVI5), GEL4_ASPFU  (P0C956), HEXA_PSEO7  (P48823)

		

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission