Entry: PS01044

General information about the entry
Entry name SQUALEN_PHYTOEN_SYN_1
Accession number PS01044
Entry type PATTERN
Date NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00802
Name and characterization of the entry
DescriptionSqualene and phytoene synthases signature 1.
Pattern Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 58 hits in 58 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 55 hits in 55 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 3 hits in 3 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 94.83 %
  • Recall (true hits / (true hits + false negatives)): 88.71 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BSS_BOTBR   (Q9SDW9), CRTB_ESCVU  (P22872), CRTB_MYCBO  (P65861), 
CRTB_MYCTU  (P65860), CRTB_PANAN  (P21683), CRTB_PARSN  (P54975), 
CRTB_RHOCB  (P17056), CRTB_RHOS4  (P54905), CRTB_STRGR  (P54977), 
CRTB_SYNE7  (P37269), CRTB_SYNY3  (P37294), CRTB_THET2  (P37270), 
CRTM_STAA3  (Q2FDU5), CRTM_STAA8  (Q2FV59), CRTM_STAAB  (Q2YWE7), 
CRTM_STAAC  (Q5HCY8), CRTM_STAAE  (O07854), CRTM_STAAM  (Q99R75), 
CRTM_STAAN  (Q7A3E1), CRTM_STAAS  (Q6G6B2), CRTM_STAAU  (A9JQL9), 
CRTM_STAAW  (Q8NUQ5), CRTM_STAHJ  (Q4L976), CRTY_SPIPL  (O07333), 
FDFT_ARATH  (P53799), FDFT_ASHGO  (Q752X9), FDFT_BOVIN  (Q32KR6), 
FDFT_CANAX  (P78589), FDFT_CANGA  (Q9HGZ6), FDFT_CYBJA  (O74165), 
FDFT_DICDI  (Q54DR1), FDFT_HUMAN  (P37268), FDFT_MOUSE  (P53798), 
FDFT_NEUCR  (Q7S4Z6), FDFT_NICBE  (P53800), FDFT_PONAB  (Q5R6U3), 
FDFT_RAT    (Q02769), FDFT_SCHPO  (P36596), FDFT_USTMA  (Q92459), 
FDFT_YARLI  (Q9Y753), FDFT_YEAST  (P29704), LCPS_COLGM  (E3Q717), 
LCPS_NEUCR  (P37295), LCPS_SORMK  (D1Z4K7), LCPS_SPORE  (E6ZZ11), 
LCPS_USTMA  (Q4P0S6), PSY1_SOLLC  (P08196), PSY2_SOLLC  (P37273), 
PSY_ARATH   (P37271), PSY_CAPAN   (P37272), PSY_CUCME   (P49293), 
PSY_DAUCA   (Q9SSU8), PSY_MAIZE   (P49085), PSY_NARPS   (P53797), 
Y4AC_RHISN  (P55350)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BOCS_BOTBR  (G0Y288), BOSS_BOTBR  (G0Y287), CRIT_STRCO  (Q9ACU1), 
LCPS_MUCCL  (Q9UUQ6), PSDS_BOTBR  (G0Y286), Y4AD_RHISN  (P55351), 
YISP_BACSU  (O06728)
False positive hits (sequences which do not belong to the set under consideration):
GEL4_ASPFC  (B0XVI5), GEL4_ASPFU  (P0C956), HEXA_PSEO7  (P48823)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1EZF; 2ZCO; 2ZCP; 2ZCQ; 2ZCR; 2ZCS; 2ZY1; 3ACW; 3ACX; 3ACY; 3AE0; 3ASX; 3LEE; 3Q2Z; 3Q30; 3TFN; 3TFP; 3TFV; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3VJD; 3VJE; 4E9U; 4E9Z; 4EA0; 4EA1; 4EA2; 4F6V; 4F6X;

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