Entry: PS01044

General information about the entry

Entry name [info] SQUALEN_PHYTOEN_SYN_1
Accession [info] PS01044
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00802

Name and characterization of the entry

Description [info] Squalene and phytoene synthases signature 1.
Pattern [info]
Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 61 in 61 different sequences
Number of true positive hits 58 in 58 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 95.08 %
Recall (true positives / (true positives + false negatives)) 89.23 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
58 sequences

BSS_BOTBR   (Q9SDW9), CRTB_ENTAG  (D5KXJ0), CRTB_ESCVU  (P22872), 
CRTB_MYCBO  (P65861), CRTB_MYCTO  (P9WHP2), CRTB_MYCTU  (P9WHP3), 
CRTB_PANAN  (P21683), CRTB_PARSN  (P54975), CRTB_RHOCB  (P17056), 
CRTB_RHOS4  (P54905), CRTB_STRGR  (P54977), CRTB_SYNE7  (P37269), 
CRTB_SYNY3  (P37294), CRTB_THET2  (P37270), CRTM_STAA3  (Q2FDU5), 
CRTM_STAA8  (Q2FV59), CRTM_STAAB  (Q2YWE7), CRTM_STAAC  (Q5HCY8), 
CRTM_STAAE  (O07854), CRTM_STAAM  (Q99R75), CRTM_STAAN  (Q7A3E1), 
CRTM_STAAS  (Q6G6B2), CRTM_STAAU  (A9JQL9), CRTM_STAAW  (Q8NUQ5), 
CRTM_STAHJ  (Q4L976), CRTY_ARTPT  (O07333), FDFT_ARATH  (P53799), 
FDFT_ASHGO  (Q752X9), FDFT_BOVIN  (Q32KR6), FDFT_CANAX  (P78589), 
FDFT_CANGA  (Q9HGZ6), FDFT_CYBJA  (O74165), FDFT_DICDI  (Q54DR1), 
FDFT_HUMAN  (P37268), FDFT_MOUSE  (P53798), FDFT_NEUCR  (Q7S4Z6), 
FDFT_NICBE  (P53800), FDFT_PONAB  (Q5R6U3), FDFT_RAT    (Q02769), 
FDFT_SCHPO  (P36596), FDFT_USTMA  (Q92459), FDFT_YARLI  (Q9Y753), 
FDFT_YEAST  (P29704), LCPS_COLGM  (E3Q717), LCPS_NEUCR  (P37295), 
LCPS_SORMK  (D1Z4K7), LCPS_SPORE  (E6ZZ11), LCPS_USTMA  (Q4P0S6), 
PSY1_SOLLC  (P08196), PSY2_SOLLC  (P37273), PSY_ARATH   (P37271), 
PSY_CAPAN   (P37272), PSY_CUCME   (P49293), PSY_DAUCA   (Q9SSU8), 
PSY_MAIZE   (P49085), PSY_NARPS   (P53797), PSY_ONCHC   (Q52QW5), 
Y4AC_RHISN  (P55350)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BOCS_BOTBR  (G0Y288), BOSS_BOTBR  (G0Y287), CRIT_STRCO  (Q9ACU1), 
LCPS_MUCCL  (Q9UUQ6), PSDS_BOTBR  (G0Y286), Y4AD_RHISN  (P55351), 
YISP_BACSU  (O06728)
» More

UniProtKB/Swiss-Prot
False positive sequences
3 sequences

GEL4_ASPFC  (B0XVI5), GEL4_ASPFU  (P0C956), HEXA_PSEO7  (P48823)

		
PDB
[Detailed view]
48 PDB

1EZF; 2ZCO; 2ZCQ; 2ZCR; 2ZCS; 2ZY1; 3ACW; 3ACX; 3ACY; 3AE0; 3ASX; 3LEE; 3Q2Z; 3Q30; 3TFN; 3TFP; 3TFV; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3VJD; 3VJE; 3W7F; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA; 4E9U; 4E9Z; 4EA0; 4EA1; 4EA2; 4F6V; 4F6X
» More

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