Entry: PS01045

General information about the entry

Entry name [info] SQUALEN_PHYTOEN_SYN_2
Accession [info] PS01045
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00802

Name and characterization of the entry

Description [info] Squalene and phytoene synthases signature 2.
Pattern [info]
[LIVM]-G-x(3)-Q-x(2,3)-[ND]-[IFL]-x-[RE]-D-[LIVMFY]-x(2)-[DE]-x(4,7)-R-x-
[FY]-x-P.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 59 in 59 different sequences
Number of true positive hits 59 in 59 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 16
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 78.67 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
59 sequences

BSS_BOTBR   (Q9SDW9    ), CRIT_STRCO  (Q9ACU1    ), CRTB_ENTAG  (D5KXJ0    ), 
CRTB_ESCVU  (P22872    ), CRTB_MYCBO  (P65861    ), CRTB_MYCTO  (P9WHP2    ), 
CRTB_MYCTU  (P9WHP3    ), CRTB_PANAN  (P21683    ), CRTB_PARSN  (P54975    ), 
CRTB_RHOCB  (P17056    ), CRTB_RHOS4  (P54905    ), CRTB_STRGR  (P54977    ), 
CRTB_SYNE7  (P37269    ), CRTB_SYNY3  (P37294    ), CRTB_THET2  (P37270    ), 
CRTY_ARTPT  (O07333    ), FDFT_ARATH  (P53799    ), FDFT_ASHGO  (Q752X9    ), 
FDFT_BOVIN  (Q32KR6    ), FDFT_CANAX  (P78589    ), FDFT_CANGA  (Q9HGZ6    ), 
FDFT_CYBJA  (O74165    ), FDFT_DICDI  (Q54DR1    ), FDFT_HUMAN  (P37268    ), 
FDFT_MOUSE  (P53798    ), FDFT_NEUCR  (Q7S4Z6    ), FDFT_NICBE  (P53800    ), 
FDFT_PONAB  (Q5R6U3    ), FDFT_RAT    (Q02769    ), FDFT_SCHPO  (P36596    ), 
FDFT_USTMA  (Q92459    ), FDFT_YARLI  (Q9Y753    ), FDFT_YEAST  (P29704    ), 
LCPS_ARTGP  (E4UPP6    ), LCPS_BLATR  (Q67GH9    ), LCPS_COLGM  (E3Q717    ), 
LCPS_GIBFU  (Q8X0Z1    ), LCPS_LEPMJ  (E4ZUB5    ), LCPS_MUCCL  (Q9UUQ6    ), 
LCPS_NEUCR  (P37295    ), LCPS_PHANO  (Q0V6M5    ), LCPS_PHARH  (Q7Z859    ), 
LCPS_PHYB8  (Q9P854    ), LCPS_PODAN  (B2ATB0    ), LCPS_PYRTR  (B2WAQ3    ), 
LCPS_SORMK  (D1Z4K7    ), LCPS_SPORE  (E6ZZ11    ), LCPS_TRIVH  (D4D802    ), 
LCPS_USTMA  (Q4P0S6    ), PSY1_SOLLC  (P08196    ), PSY2_SOLLC  (P37273    ), 
PSY_ARATH   (P37271    ), PSY_CAPAN   (P37272    ), PSY_CUCME   (P49293    ), 
PSY_DAUCA   (Q9SSU8    ), PSY_MAIZE   (P49085    ), PSY_NARPS   (P53797    ), 
PSY_ONCHC   (Q52QW5    ), Y4AC_SINFN  (P55350    )
» more

UniProtKB/Swiss-Prot
False negative sequences
16 sequences

BOCS_BOTBR  (G0Y288    ), BOSS_BOTBR  (G0Y287    ), CRTM_STAA3  (Q2FDU5    ), 
CRTM_STAA8  (Q2FV59    ), CRTM_STAAB  (Q2YWE7    ), CRTM_STAAC  (Q5HCY8    ), 
CRTM_STAAE  (O07854    ), CRTM_STAAM  (Q99R75    ), CRTM_STAAN  (Q7A3E1    ), 
CRTM_STAAS  (Q6G6B2    ), CRTM_STAAU  (A9JQL9    ), CRTM_STAAW  (Q8NUQ5    ), 
CRTM_STAHJ  (Q4L976    ), PSDS_BOTBR  (G0Y286    ), Y4AD_SINFN  (P55351    ), 
YISP_BACSU  (O06728    )
» more

PDB
[Detailed view]
26 PDB

1EZF; 3ASX; 3LEE; 3Q2Z; 3Q30; 3V66; 3VJ8; 3VJ9; 3VJA; 3VJB; 3VJC; 3WC9; 3WCD; 3WCF; 3WCH; 3WCI; 3WCJ; 3WCL; 3WCM; 3WEF; 3WEG; 3WEH; 3WEI; 3WEJ; 3WEK; 3WSA
» more

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