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Entry: PS01068

General information about the entry

Entry name [info] OMPA_1
Accession [info] PS01068
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00819

Name and characterization of the entry

Description [info] OmpA-like domain.
Pattern [info]
[LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]-
x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)-
[LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 55 in 55 different sequences
Number of true positive hits 55 in 55 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 10
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.62 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
55 sequences

ARFA_MYCBO  (P65594    ), ARFA_MYCBP  (A1KH31    ), ARFA_MYCTO  (P9WIU4    ), 
ARFA_MYCTU  (P9WIU5    ), MOTY_VIBAN  (Q9S3P9    ), MOTY_VIBPA  (P46233    ), 
OMP16_AGRFC (Q8U9L5    ), OMP16_BRUAB (P0A3S9    ), OMP16_BRUME (P0A3S7    ), 
OMP16_BRUSU (P0A3S8    ), OMP16_RHILO (Q98F85    ), OMP16_RHIME (Q926C3    ), 
OMP3_NEIGO  (P07050    ), OMP40_PORGI (Q9S3R8    ), OMP41_PORGI (Q9S3R9    ), 
OMP4_NEIMA  (P0A0V2    ), OMP4_NEIMB  (P0A0V3    ), OMP51_HAEIN (P43840    ), 
OMP52_HAEIF (P38368    ), OMP53_HAEIF (P45996    ), OMPA_ATLHE  (P24754    ), 
OMPA_BORAV  (Q05146    ), OMPA_BUCAI  (P57414    ), OMPA_BUCAP  (Q8K9L4    ), 
OMPA_CITFR  (P24016    ), OMPA_ECO57  (P0A911    ), OMPA_ECOLI  (P0A910    ), 
OMPA_ESCF3  (B7LNW7    ), OMPA_ESCFE  (P0C8Z2    ), OMPA_KLEAE  (P09146    ), 
OMPA_KLEPN  (P24017    ), OMPA_SALTI  (Q8Z7S0    ), OMPA_SALTY  (P02936    ), 
OMPA_SERMA  (P04845    ), OMPA_SEROD  (P24755    ), OMPA_SHIBC  (I2BAK7    ), 
OMPA_SHIBL  (P0DJO6    ), OMPA_SHIDY  (P02935    ), OMPA_YERPE  (Q8ZG77    ), 
OMPA_YERPS  (P38399    ), PAL_BUCBP   (Q89AJ5    ), PAL_ECO57   (P0A913    ), 
PAL_ECOLI   (P0A912    ), PAL_HAEIN   (P10324    ), PAL_LEGPN   (P26493    ), 
PAL_PASMU   (Q51886    ), PAL_PSEAE   (Q9I4Z4    ), PAL_PSEPK   (P0A138    ), 
PAL_PSEPU   (P0A139    ), PAL_SHIFL   (P0A914    ), PORF_PSEAE  (P13794    ), 
PORF_PSEFL  (P37726    ), PORF_PSESY  (P22263    ), TPN50_TREPA (P38369    ), 
YIAD_ECOLI  (P37665    )
» more

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

LAFU_ECO44  (D3GSC3    ), LAFU_ECOLI  (Q47154    ), OMP38_ACIBA (Q6RYW5    ), 
OMP38_ACIBT (A3M8K2    ), OMPC_GLUDA  (P84838    ), YFIB_ECOLI  (P07021    ), 
YN58_BRUAB  (P0C536    ), YP57_BRUA2  (Q2YJ83    ), YU36_BRUME  (Q8YDY8    ), 
YU58_BRUSU  (Q9RPX3    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

OMP5_HAEPR  (P85410    ), OMPA_ACTLI  (P80444    )

		
PDB
[Detailed view]
11 PDB

1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2N48; 2W8B

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