PROSITE entry PS01068

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission

General information about the entry

Entry name [info]	OMPA_1
Accession [info]	PS01068
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00819

Name and characterization of the entry

Description [info]	OmpA-like domain.
Pattern [info]	[LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]- x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)- [LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.

Total number of hits	56 in 56 different sequences
Number of true positive hits	56 in 56 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	12
Number of 'partial' sequences	2

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	82.35 %

Comments [info]

Taxonomic range [info]	Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	56 sequences ARFA_MYCBO (P65594), ARFA_MYCBP (A1KH31), ARFA_MYCTO (P9WIU4), ARFA_MYCTU (P9WIU5), MOTY_VIBAN (Q9S3P9), MOTY_VIBPA (P46233), OMP3_NEIGO (P07050), OMP40_PORGI (Q9S3R8), OMP41_PORGI (Q9S3R9), OMP4_NEIMA (P0A0V2), OMP4_NEIMB (P0A0V3), OMP52_HAEIF (P38368), OMP53_HAEIF (P45996), OMP5_HAEIN (P43840), OMPA_ATLHE (P24754), OMPA_BORAV (Q05146), OMPA_BUCAI (P57414), OMPA_BUCAP (Q8K9L4), OMPA_CITFR (P24016), OMPA_ECO57 (P0A911), OMPA_ECOLI (P0A910), OMPA_ESCF3 (B7LNW7), OMPA_ESCFE (P0C8Z2), OMPA_KLEAE (P09146), OMPA_KLEPN (P24017), OMPA_SALTI (Q8Z7S0), OMPA_SALTY (P02936), OMPA_SERMA (P04845), OMPA_SEROD (P24755), OMPA_SHIBC (I2BAK7), OMPA_SHIBL (P0DJO6), OMPA_SHIDY (P02935), OMPA_SHIFL (A0A2S4N3N0), OMPA_YERPE (Q8ZG77), OMPA_YERPS (P38399), PAL_AGRFC (Q8U9L5), PAL_BRUAB (P0A3S9), PAL_BRUME (P0A3S7), PAL_BRUSU (P0A3S8), PAL_BUCBP (Q89AJ5), PAL_ECO57 (P0A913), PAL_ECOLI (P0A912), PAL_HAEIN (P10324), PAL_LEGPN (P26493), PAL_PASMU (Q51886), PAL_PSEAE (Q9I4Z4), PAL_PSEPK (P0A138), PAL_PSEPU (P0A139), PAL_RHILO (Q98F85), PAL_RHIME (Q926C3), PAL_SHIFL (P0A914), PORF_PSEAE (P13794), PORF_PSEFL (P37726), PORF_PSESY (P22263), TPN50_TREPA (P38369), YIAD_ECOLI (P37665) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	12 sequences LAFU_ECO44 (D3GSC3), LAFU_ECOLI (Q47154), OMP38_ACIB2 (Q6RYW5), OMP38_ACIBT (A3M8K2), OMPC_GLUDA (P84838), YFIB_ECOLI (P07021), YFIB_PSEAE (Q9I4L6), YN58_BRUAB (P0C536), YP57_BRUA2 (Q2YJ83), YU36_BRUME (Q8YDY8), YU58_BRUSU (Q9RPX3), ZORB_ECOLC (P0DW02) » more
UniProtKB/Swiss-Prot 'Partial' sequences	2 sequences OMP5_GLAPU (P85410), OMPA_ACTLI (P80444)
PDB [Detailed view]	15 PDB 1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2MQE; 2N48; 2W8B; 3NB3; 5NHX; 5U1H » more