Entry: PS01068

General information about the entry

Entry name [info] OMPA_1
Accession [info] PS01068
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00819

Name and characterization of the entry

Description [info] OmpA-like domain.
Pattern [info]
[LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]-
x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)-
[LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 55 in 55 different sequences
Number of true positive hits 55 in 55 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 10
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.62 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
55 sequences

ARFA_MYCBO  (P65594), ARFA_MYCBP  (A1KH31), ARFA_MYCTO  (P9WIU4), 
ARFA_MYCTU  (P9WIU5), MOTY_VIBAN  (Q9S3P9), MOTY_VIBPA  (P46233), 
OMP16_AGRFC (Q8U9L5), OMP16_BRUAB (P0A3S9), OMP16_BRUME (P0A3S7), 
OMP16_BRUSU (P0A3S8), OMP16_RHILO (Q98F85), OMP16_RHIME (Q926C3), 
OMP3_NEIGO  (P07050), OMP40_PORGI (Q9S3R8), OMP41_PORGI (Q9S3R9), 
OMP4_NEIMA  (P0A0V2), OMP4_NEIMB  (P0A0V3), OMP51_HAEIN (P43840), 
OMP52_HAEIF (P38368), OMP53_HAEIF (P45996), OMPA_BORAV  (Q05146), 
OMPA_BUCAI  (P57414), OMPA_BUCAP  (Q8K9L4), OMPA_CITFR  (P24016), 
OMPA_ECO57  (P0A911), OMPA_ECOLI  (P0A910), OMPA_ENTAE  (P09146), 
OMPA_ESCF3  (B7LNW7), OMPA_ESCFE  (P0C8Z2), OMPA_ESCHE  (P24754), 
OMPA_KLEPN  (P24017), OMPA_SALTI  (Q8Z7S0), OMPA_SALTY  (P02936), 
OMPA_SERMA  (P04845), OMPA_SEROD  (P24755), OMPA_SHIBC  (I2BAK7), 
OMPA_SHIBL  (P0DJO6), OMPA_SHIDY  (P02935), OMPA_YERPE  (Q8ZG77), 
OMPA_YERPS  (P38399), PAL_BUCBP   (Q89AJ5), PAL_ECO57   (P0A913), 
PAL_ECOLI   (P0A912), PAL_HAEIN   (P10324), PAL_LEGPN   (P26493), 
PAL_PASMU   (Q51886), PAL_PSEAE   (Q9I4Z4), PAL_PSEPK   (P0A138), 
PAL_PSEPU   (P0A139), PAL_SHIFL   (P0A914), PORF_PSEAE  (P13794), 
PORF_PSEFL  (P37726), PORF_PSESY  (P22263), TPN50_TREPA (P38369), 
YIAD_ECOLI  (P37665)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

LAFU_ECO44  (D3GSC3), LAFU_ECOLI  (Q47154), OMP38_ACIBA (Q6RYW5), 
OMP38_ACIBT (A3M8K2), OMPC_GLUDA  (P84838), YFIB_ECOLI  (P07021), 
YN58_BRUAB  (P0C536), YP57_BRUA2  (Q2YJ83), YU36_BRUME  (Q8YDY8), 
YU58_BRUSU  (Q9RPX3)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

OMP5_HAEPR  (P85410), OMPA_ACTLI  (P80444)

		
PDB
[Detailed view]
10 PDB

1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2W8B

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