Entry: PS01068

General information about the entry
Entry name OMPA_1
Accession number PS01068
Entry type PATTERN
Date NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00819
Name and characterization of the entry
DescriptionOmpA-like domain.
Pattern [LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]- x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)- [LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 54 hits in 54 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 54 hits in 54 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 9
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 85.71 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ARFA_MYCBO  (P65594), ARFA_MYCBP  (A1KH31), ARFA_MYCTU  (P65593), 
MOTY_VIBAN  (Q9S3P9), MOTY_VIBPA  (P46233), OMP16_AGRT5 (Q8U9L5), 
OMP16_BRUAB (P0A3S9), OMP16_BRUME (P0A3S7), OMP16_BRUSU (P0A3S8), 
OMP16_RHILO (Q98F85), OMP16_RHIME (Q926C3), OMP3_NEIGO  (P07050), 
OMP40_PORGI (Q9S3R8), OMP41_PORGI (Q9S3R9), OMP4_NEIMA  (P0A0V2), 
OMP4_NEIMB  (P0A0V3), OMP51_HAEIN (P43840), OMP52_HAEIF (P38368), 
OMP53_HAEIF (P45996), OMPA_BORAV  (Q05146), OMPA_BUCAI  (P57414), 
OMPA_BUCAP  (Q8K9L4), OMPA_CITFR  (P24016), OMPA_ECO57  (P0A911), 
OMPA_ECOLI  (P0A910), OMPA_ENTAE  (P09146), OMPA_ESCBL  (P0DJO6), 
OMPA_ESCF3  (B7LNW7), OMPA_ESCFE  (P0C8Z2), OMPA_ESCHE  (P24754), 
OMPA_KLEPN  (P24017), OMPA_SALTI  (Q8Z7S0), OMPA_SALTY  (P02936), 
OMPA_SERMA  (P04845), OMPA_SEROD  (P24755), OMPA_SHIBC  (I2BAK7), 
OMPA_SHIDY  (P02935), OMPA_YERPE  (Q8ZG77), OMPA_YERPS  (P38399), 
PAL_BUCBP   (Q89AJ5), PAL_ECO57   (P0A913), PAL_ECOLI   (P0A912), 
PAL_HAEIN   (P10324), PAL_LEGPN   (P26493), PAL_PASMU   (Q51886), 
PAL_PSEAE   (Q9I4Z4), PAL_PSEPK   (P0A138), PAL_PSEPU   (P0A139), 
PAL_SHIFL   (P0A914), PORF_PSEAE  (P13794), PORF_PSEFL  (P37726), 
PORF_PSESY  (P22263), TPN50_TREPA (P38369), YIAD_ECOLI  (P37665)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
MBHA_ECOLI  (Q47154), OMP38_ACIBA (Q6RYW5), OMP38_ACIBT (A3M8K2), 
OMPC_GLUDA  (P84838), YFIB_ECOLI  (P07021), YN58_BRUAB  (P0C536), 
YP57_BRUA2  (Q2YJ83), YU36_BRUME  (Q8YDY8), YU58_BRUSU  (Q9RPX3)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
OMP5_HAEPR  (P85410), OMPA_ACTLI  (P80444)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2W8B;

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