Entry: PS01081

General information about the entry

Entry name [info] HTH_TETR_1
Accession [info] PS01081
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00830

Name and characterization of the entry

Description [info] TetR-type HTH domain signature.
Pattern [info]
[GS]-[LIVMFYSP]-x(2,3)-[TS]-[LIVMTA]-x(2)-[LIVM]-x(5)-[LIVQSA]-
[STAGENQH]-x-[GPART]-x-[LIVMFA]-[FYSTNRH]-x-[HFYRA]-[FVW]-x-[DNSTKAG]-
[KQMT]-x(2,3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 223 in 223 different sequences
Number of true positive hits 223 in 223 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 143
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.93 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
223 sequences

ACRR_ECOL6  (P0ACT0    ), ACRR_ECOLI  (P0ACS9    ), ACRR_SHIFL  (P0ACT1    ), 
ARPR_PSEPU  (Q9KJC4    ), BDCR_ECOLI  (P39334    ), BEPR_BRUSU  (Q8G2M8    ), 
BETI1_CHRSD (Q1QXD9    ), BETI2_CHRSD (Q9L4K2    ), BETI_AGRFC  (Q8UH57    ), 
BETI_BRUA2  (Q2YMS6    ), BETI_BRUAB  (Q57EH9    ), BETI_BRUC2  (A9M9H9    ), 
BETI_BRUMB  (C0RHQ4    ), BETI_BRUME  (Q8YFY3    ), BETI_BRUSI  (B0CKN5    ), 
BETI_BRUSU  (Q8G1Z7    ), BETI_BURA4  (B1Z032    ), BETI_BURCA  (Q1BQE0    ), 
BETI_BURCC  (B1K709    ), BETI_BURCH  (A0B2F5    ), BETI_BURCJ  (B4EHJ0    ), 
BETI_BURCM  (Q0B713    ), BETI_BURL3  (Q39A42    ), BETI_BURM1  (A9AN01    ), 
BETI_BURM7  (A3MEC5    ), BETI_BURM9  (A2RWD7    ), BETI_BURMA  (Q62CH6    ), 
BETI_BURP0  (A3P6A9    ), BETI_BURP1  (Q3JLL9    ), BETI_BURP6  (A3NKP7    ), 
BETI_BURP8  (B2JS87    ), BETI_BURPP  (B2TCK0    ), BETI_BURPS  (Q63KK9    ), 
BETI_BURTA  (Q2T6C8    ), BETI_BURVG  (A4JJG4    ), BETI_BURXL  (Q13NG5    ), 
BETI_CROS8  (A7MFA6    ), BETI_ECO24  (A7ZI52    ), BETI_ECO27  (B7UJG6    ), 
BETI_ECO45  (B7MCD2    ), BETI_ECO55  (B7L442    ), BETI_ECO57  (Q8X6C3    ), 
BETI_ECO5E  (B5Z1R2    ), BETI_ECO7I  (B7NK49    ), BETI_ECO8A  (B7M2V7    ), 
BETI_ECODH  (B1XET8    ), BETI_ECOHS  (A7ZWV6    ), BETI_ECOL5  (Q0TKV9    ), 
BETI_ECOL6  (Q8FKI7    ), BETI_ECOLC  (B1J0W4    ), BETI_ECOLI  (P17446    ), 
BETI_ECOLU  (B7N8L5    ), BETI_ECOSE  (B6I093    ), BETI_ECOSM  (B1LIJ9    ), 
BETI_ECOUT  (Q1RFM1    ), BETI_KLEP3  (B5Y006    ), BETI_OCHA4  (A6X2G6    ), 
BETI_PECAS  (Q6D6E1    ), BETI_PECCP  (C6DKY6    ), BETI_PROMH  (B4EX96    ), 
BETI_PSE14  (Q48CM5    ), BETI_PSEA7  (A6VEI5    ), BETI_PSEA8  (B7V5R5    ), 
BETI_PSEAB  (Q02DY8    ), BETI_PSEAE  (Q9HTJ0    ), BETI_PSEF5  (Q4K4K9    ), 
BETI_PSEFS  (C3K3D1    ), BETI_PSEMY  (A4XPI7    ), BETI_PSEPF  (Q3K5H5    ), 
BETI_PSESM  (Q88AF0    ), BETI_PSEU2  (Q4ZM61    ), BETI_RHILO  (Q985M2    ), 
BETI_SERP5  (A8GBX7    ), BETI_SHIF8  (Q0T7M8    ), BETI_VIBCB  (A7N212    ), 
BETI_VIBPA  (Q87H51    ), BETI_VIBTL  (B7VQ27    ), BETI_VIBVU  (Q8D3K4    ), 
BETI_VIBVY  (Q7MF14    ), BETI_YERP3  (A7FKL4    ), BETI_YERPA  (Q1C930    ), 
BETI_YERPB  (B2K8U6    ), BETI_YERPE  (Q8ZGV8    ), BETI_YERPN  (Q1CFR9    ), 
BETI_YERPP  (A4TNP0    ), BETI_YERPS  (Q66D52    ), BM3R1_BACME (P43506    ), 
ENVR_ECO57  (P0ACT3    ), ENVR_ECOLI  (P0ACT2    ), FATR_BACSU  (O08335    ), 
MEPR_PSEPU  (P0C068    ), MTRR_NEIGO  (P39897    ), PKSA_BACSU  (O34381    ), 
QACR_STAAM  (P0A0N3    ), QACR_STAAU  (P0A0N4    ), QACR_STAHA  (P0A0N5    ), 
SLMA_ACTP2  (A3N3Q5    ), SLMA_ACTP7  (B3H337    ), SLMA_ACTPJ  (B0BTZ2    ), 
SLMA_CITK8  (A8ARM8    ), SLMA_CROS8  (A7MQB0    ), SLMA_ECO24  (A7ZTJ2    ), 
SLMA_ECO27  (B7UM47    ), SLMA_ECO45  (B7MFK2    ), SLMA_ECO55  (B7L761    ), 
SLMA_ECO57  (Q8X580    ), SLMA_ECO5E  (B5YWD9    ), SLMA_ECO7I  (B7NQ02    ), 
SLMA_ECO81  (B7N282    ), SLMA_ECO8A  (B7M4C6    ), SLMA_ECOBW  (C4ZXN3    ), 
SLMA_ECODH  (B1X975    ), SLMA_ECOHS  (A8A6A3    ), SLMA_ECOK1  (A1AHH2    ), 
SLMA_ECOL5  (Q0TBG8    ), SLMA_ECOL6  (Q8FC86    ), SLMA_ECOLC  (B1IYV9    ), 
SLMA_ECOLI  (P0C093    ), SLMA_ECOLU  (B7NEU5    ), SLMA_ECOSE  (B6I3L8    ), 
SLMA_ECOSM  (B1LK78    ), SLMA_EDWI9  (C5B9D1    ), SLMA_ENT38  (A4W508    ), 
SLMA_ERWT9  (B2VF78    ), SLMA_ESCF3  (B7LVK2    ), SLMA_HAEDU  (Q7VN48    ), 
SLMA_HAEI8  (Q4QLV2    ), SLMA_HAEIE  (A5UDB3    ), SLMA_HAEIG  (A5UI96    ), 
SLMA_HAEIN  (P29280    ), SLMA_HAEPS  (B8F853    ), SLMA_KLEP3  (B5XTG2    ), 
SLMA_KLEP7  (A6TFN2    ), SLMA_MANSM  (Q65R67    ), SLMA_PECAS  (Q6DAW0    ), 
SLMA_PECCP  (C6DIC4    ), SLMA_PHOLL  (Q7MY26    ), SLMA_PHOPR  (Q6LVN6    ), 
SLMA_PROMH  (B4F0W5    ), SLMA_SALA4  (B5EXE5    ), SLMA_SALAR  (A9MKN4    ), 
SLMA_SALCH  (Q57IA1    ), SLMA_SALDC  (B5FM64    ), SLMA_SALEP  (B5R5G5    ), 
SLMA_SALG2  (B5RGE6    ), SLMA_SALHS  (B4T9C5    ), SLMA_SALNS  (B4SXE2    ), 
SLMA_SALPA  (Q5PC27    ), SLMA_SALPB  (A9MVN6    ), SLMA_SALPC  (C0Q1X3    ), 
SLMA_SALPK  (B5BI15    ), SLMA_SALSV  (B4TZY2    ), SLMA_SALTI  (Q8Z2H4    ), 
SLMA_SALTY  (Q8ZL46    ), SLMA_SERP5  (A8GLE8    ), SLMA_SHIB3  (B2TTV5    ), 
SLMA_SHIF8  (Q0SYG8    ), SLMA_SHIFL  (P0C094    ), SLMA_SODGM  (Q2NQT9    ), 
SLMA_YERE8  (A1JHW9    ), SLMA_YERP3  (A7FCT1    ), SLMA_YERPA  (Q1C264    ), 
SLMA_YERPB  (B2JYN0    ), SLMA_YERPE  (Q8ZJP6    ), SLMA_YERPG  (A9R671    ), 
SLMA_YERPN  (Q1CCZ9    ), SLMA_YERPP  (A4TSE0    ), SLMA_YERPS  (Q66GD9    ), 
SLMA_YERPY  (B1JQX6    ), SRPR_PSEPU  (Q9R9T9    ), TCMR_STRGA  (P39885    ), 
TETC_ECOLX  (P28815    ), TETR1_ECOLX (P03038    ), TETR2_ECOLX (P04483    ), 
TETR3_ECOLX (P03039    ), TETR4_ECOLX (P0ACT4    ), TETR4_SALOR (P0ACT5    ), 
TETR5_ECOLX (P21337    ), TETR7_VIBAN (P51560    ), TETR8_PASMD (P51561    ), 
TETR8_PHODP (P51562    ), TTGR_PSEPK  (Q88N29    ), TTGR_PSEPT  (Q9AIU0    ), 
TTGW_PSEPT  (Q93PU7    ), UIDR_ECO57  (P0ACT8    ), UIDR_ECOL6  (P0ACT7    ), 
UIDR_ECOLI  (P0ACT6    ), UIDR_SHIFL  (P0ACT9    ), Y1353_MYCTO (P9WMD2    ), 
Y1353_MYCTU (P9WMD3    ), Y1388_MYCBO (P67435    ), Y1556_MYCTO (P9WMD0    ), 
Y1556_MYCTU (P9WMD1    ), Y1581_MYCBO (P67437    ), Y2250_MYCTO (P9WMC4    ), 
Y2250_MYCTU (P9WMC5    ), Y2274_MYCBO (Q7VEN0    ), Y2364_STAAN (Q7A3C7    ), 
Y2452_STAAB (Q2YWD0    ), Y2464_STAAS (Q6G696    ), Y2498_STAAW (Q79ZX9    ), 
Y2515_STAA3 (Q2FDS9    ), Y2578_STAAM (Q99R60    ), Y2593_STAAC (Q5HCX3    ), 
Y2658_STAAR (Q6GDM3    ), Y2897_STAA8 (Q2FV42    ), Y2912_MYCTO (P9WMC6    ), 
Y2912_MYCTU (P9WMC7    ), Y2936_MYCBO (P67441    ), Y3405_MYCTO (P9WMC2    ), 
Y3405_MYCTU (P9WMC3    ), Y3439_MYCBO (P67443    ), Y570_HAEIN  (P44757    ), 
Y767_MYCTO  (P9WMD6    ), Y767_MYCTU  (P9WMD7    ), Y790_MYCBO  (P67433    ), 
Y893_HAEIN  (P44923    ), YBIH_ECOLI  (P0ACU0    ), YBIH_SHIFL  (P0ACU1    ), 
YERO_BACSU  (O31500    ), YHGD_BACSU  (P32398    ), YTTP_BACSU  (O34970    ), 
YUXN_BACSU  (P40950    )
» more

UniProtKB/Swiss-Prot
False negative sequences
143 sequences

ACNR_CORDI  (Q6NH62    ), ACNR_COREF  (Q8FTA6    ), ACNR_CORGL  (Q8NQ97    ), 
ACNR_CORJK  (Q4JVM3    ), ACUR_RHOS4  (Q3J6K8    ), AFRP_STRGR  (Q9ZN78    ), 
BETI_RHIME  (O69786    ), BETI_STRM5  (B4SHW1    ), COMR_ECOLI  (P75952    ), 
DHAR_MYCSX  (Q9RAJ1    ), DHAS_LACLA  (Q9CIV9    ), ETHR_MYCBO  (Q7TVI1    ), 
ETHR_MYCS2  (A0R666    ), ETHR_MYCTO  (P9WMC0    ), ETHR_MYCTU  (P9WMC1    ), 
FABR_CITK8  (A8AKV8    ), FABR_CROS8  (A7ML90    ), FABR_ECO24  (A7ZUI3    ), 
FABR_ECO57  (Q7A964    ), FABR_ECOBW  (C5A0R2    ), FABR_ECODH  (B1XBX4    ), 
FABR_ECOHS  (A8A771    ), FABR_ECOK1  (A1AIE5    ), FABR_ECOL5  (Q0TA93    ), 
FABR_ECOL6  (Q8FB90    ), FABR_ECOLI  (P0ACU5    ), FABR_ECOUT  (Q1R3U4    ), 
FABR_KLEP7  (A6TGE7    ), FABR_SALAR  (A9MHG9    ), FABR_SALCH  (Q57H90    ), 
FABR_SALPA  (Q5PK70    ), FABR_SALPC  (C0Q479    ), FABR_SALPK  (B5BJN7    ), 
FABR_SALTI  (Q8XGD6    ), FABR_SALTY  (Q7CPB8    ), FABR_SHIB3  (B2TWF8    ), 
FABR_SHIBS  (Q31U25    ), FABR_SHIDS  (Q32AE3    ), FABR_SHIF8  (Q0SY28    ), 
FABR_SHIFL  (P0ACU6    ), FABR_SHISS  (Q3YV13    ), FABR_YERE8  (A1JI38    ), 
FABR_YERP3  (A7FD11    ), FABR_YERPA  (Q1CBU4    ), FABR_YERPB  (B2JZF5    ), 
FABR_YERPE  (Q7CL09    ), FABR_YERPG  (A9R6N6    ), FABR_YERPN  (Q1CNP3    ), 
FABR_YERPP  (A4TRG3    ), FABR_YERPS  (Q66G60    ), FABR_YERPY  (B1JQ48    ), 
FADR_BACSU  (P94548    ), HTHR_STRCO  (Q9ADP7    ), ICAR_STAA8  (Q9RQQ0    ), 
ICAR_STAAC  (Q5HCN2    ), ICAR_STAAE  (A6QKF4    ), ICAR_STAAM  (Q7A2K5    ), 
ICAR_STAAN  (Q7A352    ), ICAR_STAAR  (Q6GDD9    ), ICAR_STAAS  (Q6G609    ), 
ICAR_STAAW  (Q79ZV4    ), ICAR_STAEP  (Q8GLC6    ), ICAR_STAEQ  (Q5HKQ1    ), 
KSTR2_MYCS2 (A0R4Z6    ), KSTR2_MYCTO (P9WMB8    ), KSTR2_MYCTU (P9WMB9    ), 
KSTR2_RHOJR (Q0S7V2    ), KSTR_MYCS2  (A0R528    ), KSTR_MYCTU  (P96856    ), 
KSTR_RHOJR  (Q0S868    ), LMRA_BACSU  (O34619    ), LUXR_VIBHA  (P21308    ), 
MFTR_MYCTO  (P9WMB6    ), MFTR_MYCTU  (P9WMB7    ), NEMR_ECOL6  (P67431    ), 
NEMR_ECOLI  (P67430    ), NICS_PSEPK  (Q88FX7    ), RCDA_ECOLI  (P75811    ), 
RUTR_ECO57  (Q8X4Z7    ), RUTR_ECOL6  (P0ACU3    ), RUTR_ECOLI  (P0ACU2    ), 
RUTR_SHIFL  (P0ACU4    ), SLMA_ALTMD  (F2G1U7    ), SLMA_COLP3  (Q48AG4    ), 
SLMA_IDILO  (Q5QZB7    ), SLMA_MARHV  (A1U6F3    ), SLMA_MARMS  (A6VSX5    ), 
SLMA_PASMU  (Q9CLQ9    ), SLMA_SHEAM  (A1S2C9    ), SLMA_SHEB2  (B8E4J2    ), 
SLMA_SHEB5  (A3CZJ3    ), SLMA_SHEB8  (A6WIA3    ), SLMA_SHEB9  (A9KY01    ), 
SLMA_SHEDO  (Q12SF8    ), SLMA_SHEFN  (Q07WF8    ), SLMA_SHEHH  (B0TQK8    ), 
SLMA_SHELP  (A3QIQ2    ), SLMA_SHEON  (Q8E9L9    ), SLMA_SHEPA  (A8H9B3    ), 
SLMA_SHEPC  (A4Y2K8    ), SLMA_SHEPW  (B8CM26    ), SLMA_SHESA  (A0L1S2    ), 
SLMA_SHESH  (A8FQ72    ), SLMA_SHESM  (Q0HE53    ), SLMA_SHESR  (Q0HZU6    ), 
SLMA_SHESW  (A1REU1    ), SLMA_SHEWM  (B1KL08    ), SLMA_VIBCB  (A7MSP5    ), 
SLMA_VIBCH  (Q9KVD2    ), SLMA_VIBF1  (Q5E8M7    ), SLMA_VIBFM  (B5FFF4    ), 
SLMA_VIBPA  (Q87T90    ), SLMA_VIBTL  (B7VHK0    ), SLMA_VIBVU  (Q8DDX7    ), 
SLMA_VIBVY  (Q7MPT0    ), Y097_STAAR  (Q6GKL1    ), Y1255_MYCTO (P9WMD4    ), 
Y1255_MYCTU (P9WMD5    ), Y1816_MYCTO (P9WMC8    ), Y1816_MYCTU (P9WMC9    ), 
Y1846_MYCBO (P67439    ), Y196_MYCTO  (P9WME0    ), Y196_MYCTU  (P9WME1    ), 
Y472_MYCTO  (P9WMD8    ), Y472_MYCTU  (P9WMD9    ), Y6555_BACAN (Q9RMY4    ), 
YCNC_BACSU  (P94423    ), YDES_BACSU  (P96676    ), YDGC_BACSU  (P96701    ), 
YDH1_XANAU  (P22645    ), YEZE_BACSU  (Q7WY76    ), YFIR_BACSU  (O31560    ), 
YJDC_ECOL6  (P0ACU8    ), YJDC_ECOLI  (P0ACU7    ), YJDC_SHIFL  (P0ACU9    ), 
YOBS_BACSU  (O34892    ), YPB3_LACLL  (P42097    ), YVAF_BACSU  (O32228    ), 
YVDT_BACSU  (O07001    ), YVKB_BACSU  (O34643    ), YWCC_BACSU  (P39601    ), 
YXAF_BACSU  (P42105    ), YXBF_BACSU  (P46330    )
» more

PDB
[Detailed view]
76 PDB

1A6I; 1BJZ; 1JT0; 1JT6; 1JTX; 1JTY; 1JUM; 1JUP; 1JUS; 1ORK; 1QPI; 1QVT; 1QVU; 1RKW; 1RPW; 2DTZ; 2FJ1; 2G0E; 2GBY; 2HQ5; 2NS7; 2NS8; 2O7O; 2QOP; 2TCT; 2TRT; 2UXH; 2UXI; 2UXO; 2UXP; 2UXU; 2VKE; 2VKV; 2VPR; 2X6O; 2X9D; 2XB5; 2XDN; 2XGC; 2XGD; 2XGE; 2XPU; 2XPV; 2XPW; 2XRL; 3BCG; 3BQZ; 3BR0; 3BR1; 3BR2; 3BR3; 3BR5; 3BR6; 3BT9; 3BTC; 3BTI; 3BTJ; 3BTL; 3FK6; 3FK7; 3PM1; 3ZQF; 3ZQG; 3ZQH; 3ZQI; 4ABZ; 4AC0; 4AUX; 4B1R; 4B3A; 4D7M; 4D7N; 4GCK; 4GFL; 4V2F; 4V2G
» more

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