Entry: PS01081

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General information about the entry

Entry name [info] HTH_TETR_1
Accession [info] PS01081
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00830

Name and characterization of the entry

Description [info] TetR-type HTH domain signature.
Pattern [info]
[GS]-[LIVMFYSP]-x(2,3)-[TS]-[LIVMTA]-x(2)-[LIVM]-x(5)-[LIVQSA]-
[STAGENQH]-x-[GPART]-x-[LIVMFA]-[FYSTNRH]-x-[HFYRA]-[FVW]-x-[DNSTKAG]-
[KQMT]-x(2,3)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 223 in 223 different sequences
Number of true positive hits 223 in 223 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 143
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.93 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
223 sequences

ACRR_ECOL6  (P0ACT0), ACRR_ECOLI  (P0ACS9), ACRR_SHIFL  (P0ACT1), 
ARPR_PSEPU  (Q9KJC4), BDCR_ECOLI  (P39334), BEPR_BRUSU  (Q8G2M8), 
BETI1_CHRSD (Q1QXD9), BETI2_CHRSD (Q9L4K2), BETI_AGRT5  (Q8UH57), 
BETI_BRUA2  (Q2YMS6), BETI_BRUAB  (Q57EH9), BETI_BRUC2  (A9M9H9), 
BETI_BRUMB  (C0RHQ4), BETI_BRUME  (Q8YFY3), BETI_BRUSI  (B0CKN5), 
BETI_BRUSU  (Q8G1Z7), BETI_BURA4  (B1Z032), BETI_BURCA  (Q1BQE0), 
BETI_BURCC  (B1K709), BETI_BURCH  (A0B2F5), BETI_BURCJ  (B4EHJ0), 
BETI_BURCM  (Q0B713), BETI_BURM1  (A9AN01), BETI_BURM7  (A3MEC5), 
BETI_BURM9  (A2RWD7), BETI_BURMA  (Q62CH6), BETI_BURP0  (A3P6A9), 
BETI_BURP1  (Q3JLL9), BETI_BURP6  (A3NKP7), BETI_BURP8  (B2JS87), 
BETI_BURPP  (B2TCK0), BETI_BURPS  (Q63KK9), BETI_BURS3  (Q39A42), 
BETI_BURTA  (Q2T6C8), BETI_BURVG  (A4JJG4), BETI_BURXL  (Q13NG5), 
BETI_CROS8  (A7MFA6), BETI_ECO24  (A7ZI52), BETI_ECO27  (B7UJG6), 
BETI_ECO45  (B7MCD2), BETI_ECO55  (B7L442), BETI_ECO57  (Q8X6C3), 
BETI_ECO5E  (B5Z1R2), BETI_ECO7I  (B7NK49), BETI_ECO8A  (B7M2V7), 
BETI_ECODH  (B1XET8), BETI_ECOHS  (A7ZWV6), BETI_ECOL5  (Q0TKV9), 
BETI_ECOL6  (Q8FKI7), BETI_ECOLC  (B1J0W4), BETI_ECOLI  (P17446), 
BETI_ECOLU  (B7N8L5), BETI_ECOSE  (B6I093), BETI_ECOSM  (B1LIJ9), 
BETI_ECOUT  (Q1RFM1), BETI_KLEP3  (B5Y006), BETI_OCHA4  (A6X2G6), 
BETI_PECAS  (Q6D6E1), BETI_PECCP  (C6DKY6), BETI_PROMH  (B4EX96), 
BETI_PSE14  (Q48CM5), BETI_PSEA7  (A6VEI5), BETI_PSEA8  (B7V5R5), 
BETI_PSEAB  (Q02DY8), BETI_PSEAE  (Q9HTJ0), BETI_PSEF5  (Q4K4K9), 
BETI_PSEFS  (C3K3D1), BETI_PSEMY  (A4XPI7), BETI_PSEPF  (Q3K5H5), 
BETI_PSESM  (Q88AF0), BETI_PSEU2  (Q4ZM61), BETI_RHILO  (Q985M2), 
BETI_SERP5  (A8GBX7), BETI_SHIF8  (Q0T7M8), BETI_VIBCB  (A7N212), 
BETI_VIBPA  (Q87H51), BETI_VIBSL  (B7VQ27), BETI_VIBVU  (Q8D3K4), 
BETI_VIBVY  (Q7MF14), BETI_YERP3  (A7FKL4), BETI_YERPA  (Q1C930), 
BETI_YERPB  (B2K8U6), BETI_YERPE  (Q8ZGV8), BETI_YERPN  (Q1CFR9), 
BETI_YERPP  (A4TNP0), BETI_YERPS  (Q66D52), BM3R1_BACME (P43506), 
BSCR_BACSU  (O08335), ENVR_ECO57  (P0ACT3), ENVR_ECOLI  (P0ACT2), 
MEPR_PSEPU  (P0C068), MTRR_NEIGO  (P39897), PKSA_BACSU  (O34381), 
QACR_STAAM  (P0A0N3), QACR_STAAU  (P0A0N4), QACR_STAHA  (P0A0N5), 
SLMA_ACTP2  (A3N3Q5), SLMA_ACTP7  (B3H337), SLMA_ACTPJ  (B0BTZ2), 
SLMA_CITK8  (A8ARM8), SLMA_CROS8  (A7MQB0), SLMA_ECO24  (A7ZTJ2), 
SLMA_ECO27  (B7UM47), SLMA_ECO45  (B7MFK2), SLMA_ECO55  (B7L761), 
SLMA_ECO57  (Q8X580), SLMA_ECO5E  (B5YWD9), SLMA_ECO7I  (B7NQ02), 
SLMA_ECO81  (B7N282), SLMA_ECO8A  (B7M4C6), SLMA_ECOBW  (C4ZXN3), 
SLMA_ECODH  (B1X975), SLMA_ECOHS  (A8A6A3), SLMA_ECOK1  (A1AHH2), 
SLMA_ECOL5  (Q0TBG8), SLMA_ECOL6  (Q8FC86), SLMA_ECOLC  (B1IYV9), 
SLMA_ECOLI  (P0C093), SLMA_ECOLU  (B7NEU5), SLMA_ECOSE  (B6I3L8), 
SLMA_ECOSM  (B1LK78), SLMA_EDWI9  (C5B9D1), SLMA_ENT38  (A4W508), 
SLMA_ERWT9  (B2VF78), SLMA_ESCF3  (B7LVK2), SLMA_HAEDU  (Q7VN48), 
SLMA_HAEI8  (Q4QLV2), SLMA_HAEIE  (A5UDB3), SLMA_HAEIG  (A5UI96), 
SLMA_HAEIN  (P29280), SLMA_HAEPS  (B8F853), SLMA_KLEP3  (B5XTG2), 
SLMA_KLEP7  (A6TFN2), SLMA_MANSM  (Q65R67), SLMA_PECAS  (Q6DAW0), 
SLMA_PECCP  (C6DIC4), SLMA_PHOLL  (Q7MY26), SLMA_PHOPR  (Q6LVN6), 
SLMA_PROMH  (B4F0W5), SLMA_SALA4  (B5EXE5), SLMA_SALAR  (A9MKN4), 
SLMA_SALCH  (Q57IA1), SLMA_SALDC  (B5FM64), SLMA_SALEP  (B5R5G5), 
SLMA_SALG2  (B5RGE6), SLMA_SALHS  (B4T9C5), SLMA_SALNS  (B4SXE2), 
SLMA_SALPA  (Q5PC27), SLMA_SALPB  (A9MVN6), SLMA_SALPC  (C0Q1X3), 
SLMA_SALPK  (B5BI15), SLMA_SALSV  (B4TZY2), SLMA_SALTI  (Q8Z2H4), 
SLMA_SALTY  (Q8ZL46), SLMA_SERP5  (A8GLE8), SLMA_SHIB3  (B2TTV5), 
SLMA_SHIF8  (Q0SYG8), SLMA_SHIFL  (P0C094), SLMA_SODGM  (Q2NQT9), 
SLMA_YERE8  (A1JHW9), SLMA_YERP3  (A7FCT1), SLMA_YERPA  (Q1C264), 
SLMA_YERPB  (B2JYN0), SLMA_YERPE  (Q8ZJP6), SLMA_YERPG  (A9R671), 
SLMA_YERPN  (Q1CCZ9), SLMA_YERPP  (A4TSE0), SLMA_YERPS  (Q66GD9), 
SLMA_YERPY  (B1JQX6), SRPR_PSEPU  (Q9R9T9), TCMR_STRGA  (P39885), 
TETC_ECOLX  (P28815), TETR1_ECOLX (P03038), TETR2_ECOLX (P04483), 
TETR3_ECOLX (P03039), TETR4_ECOLX (P0ACT4), TETR4_SALOR (P0ACT5), 
TETR5_ECOLX (P21337), TETR7_VIBAN (P51560), TETR8_PASMD (P51561), 
TETR8_PHODP (P51562), TTGR_PSEPK  (Q88N29), TTGR_PSEPT  (Q9AIU0), 
TTGW_PSEPT  (Q93PU7), UIDR_ECO57  (P0ACT8), UIDR_ECOL6  (P0ACT7), 
UIDR_ECOLI  (P0ACT6), UIDR_SHIFL  (P0ACT9), Y1353_MYCTO (P9WMD2), 
Y1353_MYCTU (P9WMD3), Y1388_MYCBO (P67435), Y1556_MYCTO (P9WMD0), 
Y1556_MYCTU (P9WMD1), Y1581_MYCBO (P67437), Y2250_MYCTO (P9WMC4), 
Y2250_MYCTU (P9WMC5), Y2274_MYCBO (Q7VEN0), Y2364_STAAN (Q7A3C7), 
Y2452_STAAB (Q2YWD0), Y2464_STAAS (Q6G696), Y2498_STAAW (Q79ZX9), 
Y2515_STAA3 (Q2FDS9), Y2578_STAAM (Q99R60), Y2593_STAAC (Q5HCX3), 
Y2658_STAAR (Q6GDM3), Y2897_STAA8 (Q2FV42), Y2912_MYCTO (P9WMC6), 
Y2912_MYCTU (P9WMC7), Y2936_MYCBO (P67441), Y3405_MYCTO (P9WMC2), 
Y3405_MYCTU (P9WMC3), Y3439_MYCBO (P67443), Y570_HAEIN  (P44757), 
Y767_MYCTO  (P9WMD6), Y767_MYCTU  (P9WMD7), Y790_MYCBO  (P67433), 
Y893_HAEIN  (P44923), YBIH_ECOLI  (P0ACU0), YBIH_SHIFL  (P0ACU1), 
YERO_BACSU  (O31500), YHGD_BACSU  (P32398), YTTP_BACSU  (O34970), 
YUXN_BACSU  (P40950)
» More

UniProtKB/Swiss-Prot
False negative sequences
143 sequences

ACNR_CORDI  (Q6NH62), ACNR_COREF  (Q8FTA6), ACNR_CORGL  (Q8NQ97), 
ACNR_CORJK  (Q4JVM3), ACUR_RHOS4  (Q3J6K8), AFRP_STRGR  (Q9ZN78), 
BETI_RHIME  (O69786), BETI_STRM5  (B4SHW1), COMR_ECOLI  (P75952), 
DHAR_MYCSX  (Q9RAJ1), DHAS_LACLA  (Q9CIV9), ETHR_MYCBO  (Q7TVI1), 
ETHR_MYCS2  (A0R666), ETHR_MYCTO  (P9WMC0), ETHR_MYCTU  (P9WMC1), 
FABR_CITK8  (A8AKV8), FABR_CROS8  (A7ML90), FABR_ECO24  (A7ZUI3), 
FABR_ECO57  (Q7A964), FABR_ECOBW  (C5A0R2), FABR_ECODH  (B1XBX4), 
FABR_ECOHS  (A8A771), FABR_ECOK1  (A1AIE5), FABR_ECOL5  (Q0TA93), 
FABR_ECOL6  (Q8FB90), FABR_ECOLI  (P0ACU5), FABR_ECOUT  (Q1R3U4), 
FABR_KLEP7  (A6TGE7), FABR_SALAR  (A9MHG9), FABR_SALCH  (Q57H90), 
FABR_SALPA  (Q5PK70), FABR_SALPC  (C0Q479), FABR_SALPK  (B5BJN7), 
FABR_SALTI  (Q8XGD6), FABR_SALTY  (Q7CPB8), FABR_SHIB3  (B2TWF8), 
FABR_SHIBS  (Q31U25), FABR_SHIDS  (Q32AE3), FABR_SHIF8  (Q0SY28), 
FABR_SHIFL  (P0ACU6), FABR_SHISS  (Q3YV13), FABR_YERE8  (A1JI38), 
FABR_YERP3  (A7FD11), FABR_YERPA  (Q1CBU4), FABR_YERPB  (B2JZF5), 
FABR_YERPE  (Q7CL09), FABR_YERPG  (A9R6N6), FABR_YERPN  (Q1CNP3), 
FABR_YERPP  (A4TRG3), FABR_YERPS  (Q66G60), FABR_YERPY  (B1JQ48), 
FADR_BACSU  (P94548), HTHR_STRCO  (Q9ADP7), ICAR_STAA8  (Q9RQQ0), 
ICAR_STAAC  (Q5HCN2), ICAR_STAAE  (A6QKF4), ICAR_STAAM  (Q7A2K5), 
ICAR_STAAN  (Q7A352), ICAR_STAAR  (Q6GDD9), ICAR_STAAS  (Q6G609), 
ICAR_STAAW  (Q79ZV4), ICAR_STAEP  (Q8GLC6), ICAR_STAEQ  (Q5HKQ1), 
KSTR2_MYCS2 (A0R4Z6), KSTR2_MYCTO (P9WMB8), KSTR2_MYCTU (P9WMB9), 
KSTR2_RHOSR (Q0S7V2), KSTR_MYCS2  (A0R528), KSTR_MYCTU  (P96856), 
KSTR_RHOSR  (Q0S868), LMRA_BACSU  (O34619), LUXR_VIBHA  (P21308), 
MFTR_MYCTO  (P9WMB6), MFTR_MYCTU  (P9WMB7), NEMR_ECOL6  (P67431), 
NEMR_ECOLI  (P67430), NICS_PSEPK  (Q88FX7), RCDA_ECOLI  (P75811), 
RUTR_ECO57  (Q8X4Z7), RUTR_ECOL6  (P0ACU3), RUTR_ECOLI  (P0ACU2), 
RUTR_SHIFL  (P0ACU4), SLMA_ALTMD  (F2G1U7), SLMA_COLP3  (Q48AG4), 
SLMA_IDILO  (Q5QZB7), SLMA_MARAV  (A1U6F3), SLMA_MARMS  (A6VSX5), 
SLMA_PASMU  (Q9CLQ9), SLMA_SHEAM  (A1S2C9), SLMA_SHEB2  (B8E4J2), 
SLMA_SHEB5  (A3CZJ3), SLMA_SHEB8  (A6WIA3), SLMA_SHEB9  (A9KY01), 
SLMA_SHEDO  (Q12SF8), SLMA_SHEFN  (Q07WF8), SLMA_SHEHH  (B0TQK8), 
SLMA_SHELP  (A3QIQ2), SLMA_SHEON  (Q8E9L9), SLMA_SHEPA  (A8H9B3), 
SLMA_SHEPC  (A4Y2K8), SLMA_SHEPW  (B8CM26), SLMA_SHESA  (A0L1S2), 
SLMA_SHESH  (A8FQ72), SLMA_SHESM  (Q0HE53), SLMA_SHESR  (Q0HZU6), 
SLMA_SHESW  (A1REU1), SLMA_SHEWM  (B1KL08), SLMA_VIBCB  (A7MSP5), 
SLMA_VIBCH  (Q9KVD2), SLMA_VIBF1  (Q5E8M7), SLMA_VIBFM  (B5FFF4), 
SLMA_VIBPA  (Q87T90), SLMA_VIBSL  (B7VHK0), SLMA_VIBVU  (Q8DDX7), 
SLMA_VIBVY  (Q7MPT0), Y097_STAAR  (Q6GKL1), Y1255_MYCTO (P9WMD4), 
Y1255_MYCTU (P9WMD5), Y1816_MYCTO (P9WMC8), Y1816_MYCTU (P9WMC9), 
Y1846_MYCBO (P67439), Y196_MYCTO  (P9WME0), Y196_MYCTU  (P9WME1), 
Y472_MYCTO  (P9WMD8), Y472_MYCTU  (P9WMD9), Y6555_BACAN (Q9RMY4), 
YCNC_BACSU  (P94423), YDES_BACSU  (P96676), YDGC_BACSU  (P96701), 
YDH1_XANAU  (P22645), YEZE_BACSU  (Q7WY76), YFIR_BACSU  (O31560), 
YJDC_ECOL6  (P0ACU8), YJDC_ECOLI  (P0ACU7), YJDC_SHIFL  (P0ACU9), 
YOBS_BACSU  (O34892), YPB3_LACLL  (P42097), YVAF_BACSU  (O32228), 
YVDT_BACSU  (O07001), YVKB_BACSU  (O34643), YWCC_BACSU  (P39601), 
YXAF_BACSU  (P42105), YXBF_BACSU  (P46330)
» More

PDB
[Detailed view]
76 PDB

1A6I; 1BJ0; 1BJY; 1BJZ; 1JT0; 1JT6; 1JTX; 1JTY; 1JUM; 1JUP; 1JUS; 1ORK; 1QPI; 1QVT; 1QVU; 1RKW; 1RPW; 2DTZ; 2FJ1; 2G0E; 2GBY; 2HQ5; 2NS7; 2NS8; 2O7O; 2QOP; 2TCT; 2TRT; 2UXH; 2UXI; 2UXO; 2UXP; 2UXU; 2VKE; 2VKV; 2VPR; 2X6O; 2X9D; 2XB5; 2XDN; 2XGC; 2XGD; 2XGE; 2XPS; 2XPT; 2XPU; 2XPV; 2XPW; 2XRL; 3BCG; 3BQZ; 3BR0; 3BR1; 3BR2; 3BR3; 3BR5; 3BR6; 3BT9; 3BTC; 3BTI; 3BTJ; 3BTL; 3FK6; 3FK7; 3PM1; 3ZQF; 3ZQG; 3ZQH; 3ZQI; 4ABZ; 4AC0; 4AUX; 4B1R; 4B3A; 4GCK; 4GFL
» More

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