Entry: PS01110

General information about the entry

Entry name [info] RNA_POL_H_23KD
Accession [info] PS01110
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00854

Name and characterization of the entry

Description [info] RNA polymerases H / 23 Kd subunits signature.
Pattern [info]
H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 54 in 54 different sequences
Number of true positive hits 54 in 54 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.10 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
54 sequences

RPAB1_ASHGO (Q757H7), RPAB1_BOVIN (Q2T9T3), RPAB1_CAEBR (A8XGH1), 
RPAB1_CAEEL (Q9N5K2), RPAB1_CANGA (Q6FQA6), RPAB1_DEBHA (Q6BIJ0), 
RPAB1_DICDI (Q54EH2), RPAB1_HUMAN (P19388), RPAB1_KLULA (Q6CJ62), 
RPAB1_KLUMA (Q9P4B9), RPAB1_MOUSE (Q80UW8), RPAB1_PONAB (Q5R587), 
RPAB1_RAT   (B0BNE2), RPAB1_SCHPO (Q09191), RPAB1_YARLI (Q6CA26), 
RPAB1_YEAST (P20434), RPB5A_ARATH (O81098), RPOH_AERPE  (Q9YAT3), 
RPOH_ARCFU  (O28394), RPOH_HALS3  (B0R8D7), RPOH_HALSA  (P0CX06), 
RPOH_HYPBU  (A2BN32), RPOH_METAC  (Q8TRB4), RPOH_METBF  (Q464Y4), 
RPOH_METJA  (Q58443), RPOH_METKA  (Q8TXI5), RPOH_METM5  (A4FWF9), 
RPOH_METM6  (A9A9V3), RPOH_METMA  (Q8PUQ8), RPOH_METMP  (P61519), 
RPOH_METS5  (A4YCQ7), RPOH_METTH  (O27122), RPOH_METTP  (A0B555), 
RPOH_METVS  (P41559), RPOH_PYRAB  (Q9V116), RPOH_PYRFU  (Q8U0M2), 
RPOH_PYRHO  (O74019), RPOH_SULAC  (P11521), RPOH_SULIA  (C3MZM6), 
RPOH_SULIK  (C4KIV6), RPOH_SULIL  (C3MRK1), RPOH_SULIM  (C3MY97), 
RPOH_SULIN  (C3NFS5), RPOH_SULIY  (C3N7P8), RPOH_SULSO  (Q980Q9), 
RPOH_SULTO  (Q976A3), RPOH_THEAC  (Q03588), RPOH_THECE  (P31815), 
RPOH_THEGJ  (C5A210), RPOH_THEKO  (Q5JE31), RPOH_THEON  (B6YT14), 
RPOH_THEPD  (A1RWW7), RPOH_THESM  (C6A1F8), RPOH_THEVO  (Q979F2)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

RPOH_META3  (A6UV53), RPOH_METBU  (Q12WS3), RPOH_METLZ  (A2SSM7), 
RPOH_METM7  (A6VGU6), RPOH_METST  (Q2NEK1), RPOH_NITMS  (A9A458), 
RPOH_PYRAE  (Q8ZYR0), RPOH_STAMF  (A3DMP2)
» More

PDB
[Detailed view]
113 PDB

1DZF; 1EIK; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4V1M; 4V1N; 4V1O; 4X67; 4X6A
» More

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