Entry: PS01110

General information about the entry

Entry name [info] RNA_POL_H_23KD
Accession [info] PS01110
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00854

Name and characterization of the entry

Description [info] RNA polymerases H / 23 Kd subunits signature.
Pattern [info]
H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 54 in 54 different sequences
Number of true positive hits 54 in 54 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.10 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
54 sequences

RPAB1_ASHGO (Q757H7    ), RPAB1_BOVIN (Q2T9T3    ), RPAB1_CAEBR (A8XGH1    ), 
RPAB1_CAEEL (Q9N5K2    ), RPAB1_CANGA (Q6FQA6    ), RPAB1_DEBHA (Q6BIJ0    ), 
RPAB1_DICDI (Q54EH2    ), RPAB1_HUMAN (P19388    ), RPAB1_KLULA (Q6CJ62    ), 
RPAB1_KLUMA (Q9P4B9    ), RPAB1_MOUSE (Q80UW8    ), RPAB1_PONAB (Q5R587    ), 
RPAB1_RAT   (B0BNE2    ), RPAB1_SCHPO (Q09191    ), RPAB1_YARLI (Q6CA26    ), 
RPAB1_YEAST (P20434    ), RPB5A_ARATH (O81098    ), RPOH_AERPE  (Q9YAT3    ), 
RPOH_ARCFU  (O28394    ), RPOH_HALS3  (B0R8D7    ), RPOH_HALSA  (P0CX06    ), 
RPOH_HYPBU  (A2BN32    ), RPOH_METAC  (Q8TRB4    ), RPOH_METBF  (Q464Y4    ), 
RPOH_METJA  (Q58443    ), RPOH_METKA  (Q8TXI5    ), RPOH_METM5  (A4FWF9    ), 
RPOH_METM6  (A9A9V3    ), RPOH_METMA  (Q8PUQ8    ), RPOH_METMP  (P61519    ), 
RPOH_METS5  (A4YCQ7    ), RPOH_METTH  (O27122    ), RPOH_METTP  (A0B555    ), 
RPOH_METVS  (P41559    ), RPOH_PYRAB  (Q9V116    ), RPOH_PYRFU  (Q8U0M2    ), 
RPOH_PYRHO  (O74019    ), RPOH_SULAC  (P11521    ), RPOH_SULIA  (C3MZM6    ), 
RPOH_SULIK  (C4KIV6    ), RPOH_SULIL  (C3MRK1    ), RPOH_SULIM  (C3MY97    ), 
RPOH_SULIN  (C3NFS5    ), RPOH_SULIY  (C3N7P8    ), RPOH_SULSO  (Q980Q9    ), 
RPOH_SULTO  (Q976A3    ), RPOH_THEAC  (Q03588    ), RPOH_THECE  (P31815    ), 
RPOH_THEGJ  (C5A210    ), RPOH_THEKO  (Q5JE31    ), RPOH_THEON  (B6YT14    ), 
RPOH_THEPD  (A1RWW7    ), RPOH_THESM  (C6A1F8    ), RPOH_THEVO  (Q979F2    )
» more

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

RPOH_META3  (A6UV53    ), RPOH_METBU  (Q12WS3    ), RPOH_METLZ  (A2SSM7    ), 
RPOH_METM7  (A6VGU6    ), RPOH_METST  (Q2NEK1    ), RPOH_NITMS  (A9A458    ), 
RPOH_PYRAE  (Q8ZYR0    ), RPOH_STAMF  (A3DMP2    )
» more

PDB
[Detailed view]
137 PDB

1DZF; 1EIK; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission