Entry: PS01110

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General information about the entry

Entry name [info] RNA_POL_H_23KD
Accession [info] PS01110
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00854

Name and characterization of the entry

Description [info] RNA polymerases H / 23 Kd subunits signature.
Pattern [info]
H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 54 in 54 different sequences
Number of true positive hits 54 in 54 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.10 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
54 sequences

RPAB1_ASHGO (Q757H7), RPAB1_BOVIN (Q2T9T3), RPAB1_CAEBR (A8XGH1), 
RPAB1_CAEEL (Q9N5K2), RPAB1_CANGA (Q6FQA6), RPAB1_DEBHA (Q6BIJ0), 
RPAB1_DICDI (Q54EH2), RPAB1_HUMAN (P19388), RPAB1_KLULA (Q6CJ62), 
RPAB1_KLUMA (Q9P4B9), RPAB1_MOUSE (Q80UW8), RPAB1_PONAB (Q5R587), 
RPAB1_RAT   (B0BNE2), RPAB1_SCHPO (Q09191), RPAB1_YARLI (Q6CA26), 
RPAB1_YEAST (P20434), RPB5A_ARATH (O81098), RPOH_AERPE  (Q9YAT3), 
RPOH_ARCFU  (O28394), RPOH_HALS3  (B0R8D7), RPOH_HALSA  (P0CX06), 
RPOH_HYPBU  (A2BN32), RPOH_METAC  (Q8TRB4), RPOH_METBF  (Q464Y4), 
RPOH_METJA  (Q58443), RPOH_METKA  (Q8TXI5), RPOH_METM5  (A4FWF9), 
RPOH_METM6  (A9A9V3), RPOH_METMA  (Q8PUQ8), RPOH_METMP  (P61519), 
RPOH_METS5  (A4YCQ7), RPOH_METTH  (O27122), RPOH_METTP  (A0B555), 
RPOH_METVS  (P41559), RPOH_PYRAB  (Q9V116), RPOH_PYRFU  (Q8U0M2), 
RPOH_PYRHO  (O74019), RPOH_SULAC  (P11521), RPOH_SULIA  (C3MZM6), 
RPOH_SULIK  (C4KIV6), RPOH_SULIL  (C3MRK1), RPOH_SULIM  (C3MY97), 
RPOH_SULIN  (C3NFS5), RPOH_SULIY  (C3N7P8), RPOH_SULSO  (Q980Q9), 
RPOH_SULTO  (Q976A3), RPOH_THEAC  (Q03588), RPOH_THECE  (P31815), 
RPOH_THEGJ  (C5A210), RPOH_THEKO  (Q5JE31), RPOH_THEON  (B6YT14), 
RPOH_THEPD  (A1RWW7), RPOH_THESM  (C6A1F8), RPOH_THEVO  (Q979F2)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

RPOH_META3  (A6UV53), RPOH_METBU  (Q12WS3), RPOH_METLZ  (A2SSM7), 
RPOH_METM7  (A6VGU6), RPOH_METST  (Q2NEK1), RPOH_NITMS  (A9A458), 
RPOH_PYRAE  (Q8ZYR0), RPOH_STAMF  (A3DMP2)
» More

PDB
[Detailed view]
107 PDB

1DZF; 1EIK; 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J
» More

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