Entry: PS01123

General information about the entry
Entry name TNASE_1
Accession number PS01123
Entry type PATTERN
Date NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00865
Associated ProRule PRU10048
Name and characterization of the entry
DescriptionThermonuclease family signature 1.
Pattern D-G-D-T-[LIVM]-x-[LIVMC]-x(9,10)-R-[LIVM]-x(2)-[LIVM]-D-x-P-E.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 17 hits in 17 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 17 hits in 17 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 70
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 19.54 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 9,active_site
  • `Interesting' site in the pattern: 16,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
NUC_SHIFL   (P29769), NUC_STAAC   (Q5HHM4), NUC_STAAM   (Q99VJ0), 
NUC_STAAN   (Q7A6P2), NUC_STAAR   (Q6GIK1), NUC_STAAS   (Q6GB41), 
NUC_STAAU   (P00644), NUC_STAAW   (Q8NXI6), NUC_STAHY   (P43270), 
NUC_STAIN   (P43269), PARB4_ECOLX (P22997), Y1296_HAEIN (Q57519), 
Y1439_METJA (Q58834), Y186_MYCGE  (P47432), Y6211_BACAN (Q9X397), 
YFI3_ECO57  (Q7BSX4), YFI3_ECOLX  (Q99342)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LCL3_AJEDR  (C5GB89), LCL3_ARTGP  (E4V094), LCL3_ARTOC  (C5FTB4), 
LCL3_ASHGO  (Q754Z2), LCL3_ASPCL  (A1CRW4), LCL3_ASPFC  (B0XMZ5), 
LCL3_ASPFN  (B8MY73), LCL3_ASPFU  (Q4WK77), LCL3_ASPNC  (A2Q8K8), 
LCL3_ASPOR  (Q2URN2), LCL3_ASPTN  (Q0CUT8), LCL3_BOTFB  (A6RP27), 
LCL3_CANAL  (Q5AKW3), LCL3_CANAW  (C4YFU9), LCL3_CANDC  (B9W9Z5), 
LCL3_CANGA  (Q6FS62), LCL3_CANTT  (C5MC60), LCL3_CLAL4  (C4Y4X4), 
LCL3_COCP7  (C5P0Z4), LCL3_COLGM  (E3QWM6), LCL3_CRYGW  (E6R427), 
LCL3_DEBHA  (Q6BSY9), LCL3_EMENI  (Q5BGS2), LCL3_KLUDE  (Q874L8), 
LCL3_KLULA  (Q6CMM1), LCL3_LACBS  (B0D7T0), LCL3_LACTC  (C5E2G4), 
LCL3_LEPMJ  (E4ZVE5), LCL3_LODEL  (A5E1Q5), LCL3_MAGO7  (A4RMK0), 
LCL3_NECH7  (C7YQ31), LCL3_NEOFI  (A1D4S1), LCL3_PARBA  (C1H492), 
LCL3_PARBD  (C1GKM1), LCL3_PARBP  (C0SEQ8), LCL3_PENCW  (B6H1W0), 
LCL3_PENMQ  (B6QNP4), LCL3_PHANO  (Q0UVH1), LCL3_PICGU  (A5DNZ8), 
LCL3_PICPG  (C4QW04), LCL3_PICST  (A3GI61), LCL3_PODAN  (B2AU25), 
LCL3_PYRTR  (B2WC78), LCL3_SCHCM  (D8QGA7), LCL3_SCHJY  (B6JYT1), 
LCL3_SCHPO  (O60168), LCL3_SCLS1  (A7ECE0), LCL3_UNCRE  (C4JVW2), 
LCL3_VANPO  (A7TE94), LCL3_VERA1  (C9SI22), LCL3_YARLI  (Q6C427), 
LCL3_YEAS1  (B3LHF1), LCL3_YEAS2  (C7GW31), LCL3_YEAS6  (B5VIN9), 
LCL3_YEAS7  (A6ZU94), LCL3_YEAS8  (C8Z8G3), LCL3_YEAST  (P53153), 
LCL3_ZYGRC  (C5DZY8), SND1_BOVIN  (Q863B3), SND1_DANRE  (Q7ZT42), 
SND1_HUMAN  (Q7KZF4), SND1_MOUSE  (Q78PY7), SND1_PONAB  (Q5REU4), 
SND1_RAT    (Q66X93), SND1_SCHPO  (Q9Y7U7), Y133_MYCPN  (P75265), 
Y38K_CORSE  (Q39635), YHCR_BACSU  (P54602), YNCB_BACSU  (P94492), 
YOKF_BACSU  (O32001)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1EQV; 1EY0; 1EY4; 1EY5; 1EY6; 1EY7; 1EY8; 1EY9; 1EYA; 1EYC; 1EYD; 1EZ6; 1EZ8; 1F2M; 1F2Y; 1F2Z; 1IHZ; 1II3; 1JOK; 1JOO; 1JOQ; 1JOR; 1KAA; 1KAB; 1KDA; 1KDB; 1KDC; 1NSN; 1RKN; 1SNC; 1SND; 1SNO; 1SNP; 1SNQ; 1STA; 1STB; 1STG; 1STH; 1STN; 1STY; 1SYB; 1SYC; 1SYD; 1SYE; 1SYF; 1SYG; 1TQO; 1TR5; 1TT2; 1U9R; 2EY2; 2EY5; 2EY6; 2EYF; 2EYH; 2EYJ; 2EYL; 2EYM; 2EYO; 2EYP; 2F0D; 2F0E; 2F0F; 2F0G; 2F0H; 2F0I; 2F0J; 2F0K; 2F0L; 2F0M; 2F0N; 2F0O; 2F0P; 2F0Q; 2F0S; 2F0T; 2F0U; 2F0V; 2F0W; 2F3V; 2F3W; 2KHS; 2LKV; 2OEO; 2OF1; 2OXP; 2PW5; 2PW7; 2PYK; 2PZT; 2PZU; 2PZW; 2RBM; 2RKS; 2SNM; 2SNS; 2SOB; 3BDC; 3C1E; 3C1F; 3D4D; 3D4W; 3D6C; 3D8G; 3DHQ; 3DMU; 3E5S; 3ERO; 3H6M; 3HEJ; 3HZX; 3ITP; 3MEH; 3MHB; 3MVV; 3MXP; 3MZ5; 3NK9; 3NQT; 3NXW; 3OWF; 3P75; 3R3O; 3RUZ; 3S9W; 3SK8; 3SR1; 3SXH; 3T13; 3TP7; 3V2T; 4DF7; 4DGZ; 4DU9; 4EOA; 4EQO; 4EQP; 4F8M; 4G57; 4H7B; 4HMI; 4HTH; 4IAL; 4ID6; 4IUN; 4IZ8; 4J1M; 4J6H;

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