Entry: PS01123

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General information about the entry

Entry name [info] TNASE_1
Accession [info] PS01123
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); NOV-1997 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00865
Associated ProRule [info] PRU10048

Name and characterization of the entry

Description [info] Thermonuclease family signature 1.
Pattern [info]
D-G-D-T-[LIVM]-x-[LIVMC]-x(9,10)-R-[LIVM]-x(2)-[LIVM]-D-x-P-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 70
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 19.54 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] active_site at position 9
Site [info] active_site at position 16
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

NUC_SHIFL   (P29769), NUC_STAAC   (Q5HHM4), NUC_STAAM   (Q99VJ0), 
NUC_STAAN   (Q7A6P2), NUC_STAAR   (Q6GIK1), NUC_STAAS   (Q6GB41), 
NUC_STAAU   (P00644), NUC_STAAW   (Q8NXI6), NUC_STAHY   (P43270), 
NUC_STAIN   (P43269), PARB4_ECOLX (P22997), Y1296_HAEIN (Q57519), 
Y1439_METJA (Q58834), Y186_MYCGE  (P47432), Y6211_BACAN (Q9X397), 
YFI3_ECO57  (Q7BSX4), YFI3_ECOLX  (Q99342)
» More

UniProtKB/Swiss-Prot
False negative sequences
70 sequences

LCL3_AJEDR  (C5GB89), LCL3_ARTGP  (E4V094), LCL3_ARTOC  (C5FTB4), 
LCL3_ASHGO  (Q754Z2), LCL3_ASPCL  (A1CRW4), LCL3_ASPFC  (B0XMZ5), 
LCL3_ASPFN  (B8MY73), LCL3_ASPFU  (Q4WK77), LCL3_ASPNC  (A2Q8K8), 
LCL3_ASPOR  (Q2URN2), LCL3_ASPTN  (Q0CUT8), LCL3_BOTFB  (A6RP27), 
LCL3_CANAL  (Q5AKW3), LCL3_CANAW  (C4YFU9), LCL3_CANDC  (B9W9Z5), 
LCL3_CANGA  (Q6FS62), LCL3_CANTT  (C5MC60), LCL3_CLAL4  (C4Y4X4), 
LCL3_COCP7  (C5P0Z4), LCL3_COLGM  (E3QWM6), LCL3_CRYGW  (E6R427), 
LCL3_DEBHA  (Q6BSY9), LCL3_EMENI  (Q5BGS2), LCL3_KLUDE  (Q874L8), 
LCL3_KLULA  (Q6CMM1), LCL3_LACBS  (B0D7T0), LCL3_LACTC  (C5E2G4), 
LCL3_LEPMJ  (E4ZVE5), LCL3_LODEL  (A5E1Q5), LCL3_MAGO7  (A4RMK0), 
LCL3_NECH7  (C7YQ31), LCL3_NEOFI  (A1D4S1), LCL3_PARBA  (C1H492), 
LCL3_PARBD  (C1GKM1), LCL3_PARBP  (C0SEQ8), LCL3_PENCW  (B6H1W0), 
LCL3_PENMQ  (B6QNP4), LCL3_PHANO  (Q0UVH1), LCL3_PICGU  (A5DNZ8), 
LCL3_PICPG  (C4QW04), LCL3_PICST  (A3GI61), LCL3_PODAN  (B2AU25), 
LCL3_PYRTR  (B2WC78), LCL3_SCHCM  (D8QGA7), LCL3_SCHJY  (B6JYT1), 
LCL3_SCHPO  (O60168), LCL3_SCLS1  (A7ECE0), LCL3_UNCRE  (C4JVW2), 
LCL3_VANPO  (A7TE94), LCL3_VERA1  (C9SI22), LCL3_YARLI  (Q6C427), 
LCL3_YEAS1  (B3LHF1), LCL3_YEAS2  (C7GW31), LCL3_YEAS6  (B5VIN9), 
LCL3_YEAS7  (A6ZU94), LCL3_YEAS8  (C8Z8G3), LCL3_YEAST  (P53153), 
LCL3_ZYGRC  (C5DZY8), SND1_BOVIN  (Q863B3), SND1_DANRE  (Q7ZT42), 
SND1_HUMAN  (Q7KZF4), SND1_MOUSE  (Q78PY7), SND1_PONAB  (Q5REU4), 
SND1_RAT    (Q66X93), SND1_SCHPO  (Q9Y7U7), Y133_MYCPN  (P75265), 
Y38K_CAPSE  (Q39635), YHCR_BACSU  (P54602), YNCB_BACSU  (P94492), 
YOKF_BACSU  (O32001)
» More

PDB
[Detailed view]
161 PDB

1EQV; 1EY0; 1EY4; 1EY5; 1EY6; 1EY7; 1EY8; 1EY9; 1EYA; 1EYC; 1EYD; 1EZ6; 1EZ8; 1F2M; 1F2Y; 1F2Z; 1IHZ; 1II3; 1JOK; 1JOO; 1JOQ; 1JOR; 1KAA; 1KAB; 1KDA; 1KDB; 1KDC; 1NSN; 1RKN; 1SNC; 1SND; 1SNO; 1SNP; 1SNQ; 1STA; 1STB; 1STG; 1STH; 1STN; 1STY; 1SYB; 1SYC; 1SYD; 1SYE; 1SYF; 1SYG; 1TQO; 1TR5; 1TT2; 1U9R; 2EY2; 2EY5; 2EY6; 2EYF; 2EYH; 2EYJ; 2EYL; 2EYM; 2EYO; 2EYP; 2F0D; 2F0E; 2F0F; 2F0G; 2F0H; 2F0I; 2F0J; 2F0K; 2F0L; 2F0M; 2F0N; 2F0O; 2F0P; 2F0Q; 2F0S; 2F0T; 2F0U; 2F0V; 2F0W; 2F3V; 2F3W; 2KHS; 2LKV; 2OEO; 2OF1; 2OXP; 2PW5; 2PW7; 2PYK; 2PZT; 2PZU; 2PZW; 2RBM; 2RKS; 2SNM; 2SNS; 2SOB; 3BDC; 3C1E; 3C1F; 3D4D; 3D4W; 3D6C; 3D8G; 3DHQ; 3DMU; 3E5S; 3ERO; 3H6M; 3HEJ; 3HZX; 3ITP; 3MEH; 3MHB; 3MVV; 3MXP; 3MZ5; 3NK9; 3NQT; 3NXW; 3OWF; 3P75; 3R3O; 3RUZ; 3S9W; 3SK8; 3SR1; 3SXH; 3T13; 3TP7; 3V2T; 4DF7; 4DGZ; 4DU9; 4EQO; 4EQP; 4F8M; 4G57; 4H7B; 4HMI; 4HTH; 4I65; 4IAL; 4ID6; 4IUN; 4IZ8; 4J1M; 4J6H; 4K14; 4K2L; 4K8I; 4K8J; 4KD4; 4KTA; 4KV6; 4KY7; 4N9T; 4NDX; 4NKL; 4NP5; 4ODG
» More

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