Entry: PS01129

General information about the entry

Entry name [info] PSI_RLU
Accession [info] PS01129
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); APR-2006 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00869

Name and characterization of the entry

Description [info] Rlu family of pseudouridine synthase signature.
Pattern [info]
[LIVCA]-[NHYTQ]-R-[LI]-[DG]-x(2)-[TV]-[STAC]-G-[LIVAGC]-[LIVMF](2)-
[LIVMFGCA]-[SGTACV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 125 in 125 different sequences
Number of true positive hits 125 in 125 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 13
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 90.58 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
125 sequences

PUS1_ARATH  (Q7XA65    ), PUS1_ORYSJ  (Q2QNM3    ), PUS2_ARATH  (Q3ECD0    ), 
PUS2_ORYSJ  (Q5Z8P2    ), PUS3_ARATH  (Q5XET6    ), PUS5_ARATH  (Q5M721    ), 
PUS5_ASHGO  (Q750S3    ), PUS5_CANAL  (Q5A0Y2    ), PUS5_DEBHA  (Q6BNX8    ), 
PUS5_ORYSJ  (Q0DST9    ), PUS5_YEAST  (Q06244    ), PUS6_YEAST  (P53294    ), 
PUS7_ARATH  (Q9LU60    ), PUS7_ORYSJ  (Q0E0Y3    ), PUS9_YEAST  (Q12069    ), 
RIB2_YEAST  (Q12362    ), RLUA_ECO57  (Q8XA10    ), RLUA_ECOL6  (Q8FL93    ), 
RLUA_ECOLI  (P0AA37    ), RLUA_HAEDU  (P59831    ), RLUA_HAEIN  (P44782    ), 
RLUA_PASMU  (Q9CK02    ), RLUA_SALTI  (Q8Z9J5    ), RLUA_SALTY  (Q8ZRV9    ), 
RLUA_SHIFL  (P0AA38    ), RLUA_VIBCH  (Q9KP71    ), RLUA_VIBPA  (Q87LD3    ), 
RLUA_VIBVU  (Q8DCG0    ), RLUA_YERPE  (Q8ZIK1    ), RLUC_BUCAI  (P57430    ), 
RLUC_BUCAP  (Q8K9J8    ), RLUC_BUCBP  (Q89AH2    ), RLUC_ECO57  (Q8X8J3    ), 
RLUC_ECOL6  (Q8FIP7    ), RLUC_ECOLI  (P0AA39    ), RLUC_HAEDU  (P59835    ), 
RLUC_HAEIN  (P44433    ), RLUC_PASMU  (Q9CM51    ), RLUC_PSEAE  (Q9HZM9    ), 
RLUC_RICBR  (Q1RJX7    ), RLUC_RICCN  (Q92IS6    ), RLUC_RICFE  (Q4UKQ3    ), 
RLUC_RICPR  (Q9ZDR7    ), RLUC_RICTY  (Q68XB2    ), RLUC_SALTI  (Q8Z7J7    ), 
RLUC_SALTY  (Q8ZQ16    ), RLUC_SHIFL  (P0AA40    ), RLUC_VIBCH  (Q9KQH0    ), 
RLUC_VIBPA  (Q87N15    ), RLUC_VIBVU  (Q8D8G1    ), RLUC_YERPE  (Q8ZFU1    ), 
RLUD_BLOFL  (P59838    ), RLUD_BORBU  (P70870    ), RLUD_BUCAI  (P57481    ), 
RLUD_BUCAP  (Q8K9E9    ), RLUD_BUCBP  (Q89AD9    ), RLUD_ECO57  (Q8X9F0    ), 
RLUD_ECOL6  (P65834    ), RLUD_ECOLI  (P33643    ), RLUD_HAEDU  (Q9L7A7    ), 
RLUD_HAEIN  (P44445    ), RLUD_NEIMA  (Q9JVB6    ), RLUD_NEIMB  (Q9K0B0    ), 
RLUD_NITEU  (Q82WZ5    ), RLUD_PASMU  (Q9CKA6    ), RLUD_PSEAE  (P33640    ), 
RLUD_RALSO  (Q8XYX8    ), RLUD_SALTI  (P65837    ), RLUD_SALTY  (P65836    ), 
RLUD_SHIFL  (P65835    ), RLUD_VIBCH  (Q9KU20    ), RLUD_VIBPA  (Q87S65    ), 
RLUD_VIBVU  (Q8DEV0    ), RLUD_XANAC  (Q8PHN2    ), RLUD_XANCP  (Q8P682    ), 
RLUD_XYLFA  (Q9PET9    ), RLUD_XYLFT  (Q87AR7    ), RLUD_YERPE  (Q8ZBV7    ), 
RLUD_ZYMMO  (P50513    ), RUSD2_HUMAN (Q8IZ73    ), RUSD2_MOUSE (Q149F1    ), 
RUSD4_BOVIN (Q5E9Z1    ), RUSD4_HUMAN (Q96CM3    ), RUSD4_MOUSE (Q9CWX4    ), 
RUSD4_RAT   (Q4QQT0    ), RUSD4_XENTR (Q28C59    ), TRUC_ECO57  (Q8X6T6    ), 
TRUC_ECOL6  (Q8FEF9    ), TRUC_ECOLI  (P0AA41    ), TRUC_HAEDU  (P59840    ), 
TRUC_HAEIN  (P44197    ), TRUC_PASMU  (Q9CNF3    ), TRUC_PECCC  (Q47417    ), 
TRUC_SALTI  (Q8Z439    ), TRUC_SALTY  (Q8ZMD5    ), TRUC_SHIFL  (P0AA42    ), 
TRUC_VIBCH  (Q9KTL4    ), TRUC_VIBPA  (Q87MD4    ), TRUC_VIBVU  (Q8DBG5    ), 
TRUC_YERPE  (Q8ZH72    ), Y042_HAEIN  (P43930    ), Y1540_MYCTO (P9WHQ2    ), 
Y1540_MYCTU (P9WHQ3    ), Y1567_MYCBO (P0A5T3    ), Y1592_SYNY3 (P72970    ), 
Y1629_SYNY3 (P74346    ), Y1758_AQUAE (O67638    ), Y209_MYCGE  (P47451    ), 
Y292_MYCPN  (P75485    ), Y347_HELPJ  (Q9ZMA1    ), Y347_HELPY  (O25114    ), 
Y370_MYCGE  (P47610    ), Y505_ZYMMO  (O66114    ), Y548_MYCPN  (P75230    ), 
Y723_CHLP8  (O50310    ), Y745_HELPJ  (Q9ZL98    ), Y745_HELPY  (O25441    ), 
Y901_CHLAA  (Q45826    ), Y956_HELPJ  (Q9ZKP5    ), Y956_HELPY  (O25610    ), 
YA32_SCHPO  (Q09709    ), YHCT_BACSU  (P54604    ), YJBO_BACSU  (O31613    ), 
YK27_CAEEL  (O16686    ), YLYB_BACSU  (Q45480    )
» more

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

PUS3_ORYSJ  (Q0J4D4    ), PUS4_ARATH  (Q9LT72    ), PUS4_ORYSJ  (Q69K07    ), 
PUS6_ARATH  (Q9SVS0    ), RUSD1_BOVIN (Q17QT4    ), RUSD1_DANRE (Q08C69    ), 
RUSD1_HUMAN (Q9UJJ7    ), RUSD1_MOUSE (Q8VCZ8    ), RUSD3_BOVIN (Q2TBK7    ), 
RUSD3_HUMAN (Q6P087    ), RUSD3_MOUSE (Q14AI6    ), RUSD4_DANRE (Q6DBR0    ), 
Y714_MYCCT  (P45614    )
» more

PDB
[Detailed view]
5 PDB

1V9F; 1V9K; 1XPI; 2I82; 2IST

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