Entry: PS01156

General information about the entry

Entry name [info] TONB_DEPENDENT_REC_2
Accession [info] PS01156
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2001 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00354

Name and characterization of the entry

Description [info] TonB-dependent receptor proteins signature 2.
Pattern [info]
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]-
[LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 78 in 78 different sequences
Number of true positive hits 77 in 77 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 32
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.72 %
Recall (true positives / (true positives + false negatives)) 70.64 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
77 sequences

BTUB_CITFR  (O52903), BTUB_CROS8  (A7ML93), BTUB_ECO24  (A7ZUI6), 
BTUB_ECO57  (Q8X714), BTUB_ECOHS  (A8A774), BTUB_ECOK1  (A1AIE8), 
BTUB_ECOL5  (Q0TA90), BTUB_ECOL6  (Q8CVJ0), BTUB_ECOLI  (P06129), 
BTUB_ECOLX  (Q93SE0), BTUB_ECOUT  (Q1R3U1), BTUB_ENT38  (A4WG45), 
BTUB_PECAS  (Q6CZB5), BTUB_SALCH  (Q57H87), BTUB_SALPA  (Q5PK67), 
BTUB_SALTI  (Q8Z314), BTUB_SALTY  (P37409), BTUB_SHIDS  (Q32AE6), 
BTUB_SHIF8  (Q0SY25), BTUB_SHIFL  (Q83IS4), BTUB_SHISS  (Q3YV10), 
BTUB_VIBC3  (A5F4P6), BTUB_VIBCH  (Q9KVI9), BTUB_VIBCM  (C3LPZ6), 
BTUB_VIBPA  (Q87KN9), BTUB_VIBVU  (Q8DD41), BTUB_YERP3  (A7FD14), 
BTUB_YERPA  (Q1CBU1), BTUB_YERPE  (Q8ZAA1), BTUB_YERPN  (Q1CNP0), 
BTUB_YERPP  (A4TRG0), BTUB_YERPS  (Q66G57), CIRA_ECOLI  (P17315), 
FATA_VIBA7  (P11461), FCUA_YEREN  (Q05202), FECA_ECOLI  (P13036), 
FEPA_ECOLI  (P05825), FHUA_ECOLI  (P06971), FHUE_ECOLI  (P16869), 
FOXA_YEREN  (Q01674), FPTA_PSEAE  (P42512), FPVA_PSEAE  (P48632), 
HGBA_HAEIF  (Q9KIV2), HGBB_HAEIF  (Q9KIV1), HGBC_HAEIF  (Q9KIV0), 
HGP1_HAEIN  (P44795), HGP2_HAEIN  (P44809), HGP3_HAEIN  (P44836), 
HGP4_HAEIN  (Q57408), HGPA_HAEIF  (Q9ZA21), HGPB_HAEIF  (O87296), 
HGPC_HAEIF  (Q9X442), HHUA_HAEIF  (Q48153), HPUB_NEIMA  (Q9JWA2), 
HPUB_NEIMC  (P96949), HXUC1_HAEIN (P44600), HXUC2_HAEIF (P45357), 
HXUC_HAEI8  (Q4QNS6), IRGA_VIBC3  (A5F9G0), IRGA_VIBCH  (P0C6R0), 
IUTA_ECOLX  (P14542), IUTA_KLEPN  (Q6U607), LBPA_NEIMA  (Q9JTK4), 
LBPA_NEIMB  (Q06379), PBUA_PSEU4  (Q08017), PFEA_PSEAE  (Q05098), 
PUPA_PSEPU  (P25184), PUPB_PSEPU  (P38047), TBP11_NEIMI (Q09056), 
TBP12_NEIMI (Q06987), TBP1_NEIGO  (Q01996), TBP1_NEIMB  (Q9K0U9), 
TBPA_HAEIN  (P44970), TDHA_HAEI8  (Q4QP67), TDHA_HAEIN  (P44523), 
Y1217_HAEIN (P45114), Y1497_NEIMB (Q7DDB6)
» More

UniProtKB/Swiss-Prot
False negative sequences
32 sequences

BFRD_BORPE  (P81549), BHUA_BRUA2  (Q2YJB2), BHUA_BRUAB  (Q576D7), 
BHUA_BRUME  (Q8YDS0), BHUA_BRUO2  (A5VW32), BTUB_PHOLL  (Q7MYE3), 
BTUB_PHOPR  (Q6LLU3), BTUB_VIBCB  (A7MXY8), BTUB_VIBVY  (Q7MQ42), 
CEAB_ECOLX  (P05819), CEAD_ECOLX  (P17998), CEAM_ECOLX  (P05820), 
FCT_DICD3   (Q47162), FIU_ECO57   (Q8X7W7), FIU_ECOL6   (Q8CW90), 
FIU_ECOLI   (P75780), FIU_ECOUT   (Q1REC0), FOXA_SALTS  (E1W8M5), 
FOXA_SALTY  (P0CL48), FYUA_YERE8  (A1JTG3), FYUA_YEREN  (P0C2M9), 
FYUA_YERPE  (P46359), HEMR_YEREN  (P31499), HGBA_HAEDU  (Q47952), 
HMUR_YERPE  (Q56989), RHTA_RHIME  (Q9Z3Q5), SUSC_BACTN  (Q8A1G1), 
TDHA_HAEDU  (Q7VNU1), XLG1_ARATH  (O80462), Y146A_HAEIN (O86241), 
Y964_NEIMB  (Q9JZN9), YNCD_ECOLI  (P76115)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

SLAP1_THET8 (Q5SH37)

		
PDB
[Detailed view]
38 PDB

1BY3; 1BY5; 1FCP; 1FI1; 1KMO; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; 1PO0; 1PO3; 1QFF; 1QFG; 1QJQ; 1QKC; 1UJW; 1XKH; 1XKW; 2FCP; 2GRX; 2GSK; 2IAH; 2O5P; 2W16; 2W6T; 2W6U; 2W75; 2W76; 2W77; 2W78; 2YSU; 3M8B; 3M8D; 3RGM; 3RGN; 3V89; 3V8X
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission