Entry: PS01156

General information about the entry

Entry name [info] TONB_DEPENDENT_REC_2
Accession [info] PS01156
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2001 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00354

Name and characterization of the entry

Description [info] TonB-dependent receptor proteins signature 2.
Pattern [info]
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]-
[LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 78 in 78 different sequences
Number of true positive hits 77 in 77 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 32
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.72 %
Recall (true positives / (true positives + false negatives)) 70.64 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
77 sequences

BTUB_CITFR  (O52903    ), BTUB_CROS8  (A7ML93    ), BTUB_ECO24  (A7ZUI6    ), 
BTUB_ECO57  (Q8X714    ), BTUB_ECOHS  (A8A774    ), BTUB_ECOK1  (A1AIE8    ), 
BTUB_ECOL5  (Q0TA90    ), BTUB_ECOL6  (Q8CVJ0    ), BTUB_ECOLI  (P06129    ), 
BTUB_ECOLX  (Q93SE0    ), BTUB_ECOUT  (Q1R3U1    ), BTUB_ENT38  (A4WG45    ), 
BTUB_PECAS  (Q6CZB5    ), BTUB_SALCH  (Q57H87    ), BTUB_SALPA  (Q5PK67    ), 
BTUB_SALTI  (Q8Z314    ), BTUB_SALTY  (P37409    ), BTUB_SHIDS  (Q32AE6    ), 
BTUB_SHIF8  (Q0SY25    ), BTUB_SHIFL  (Q83IS4    ), BTUB_SHISS  (Q3YV10    ), 
BTUB_VIBC3  (A5F4P6    ), BTUB_VIBCH  (Q9KVI9    ), BTUB_VIBCM  (C3LPZ6    ), 
BTUB_VIBPA  (Q87KN9    ), BTUB_VIBVU  (Q8DD41    ), BTUB_YERP3  (A7FD14    ), 
BTUB_YERPA  (Q1CBU1    ), BTUB_YERPE  (Q8ZAA1    ), BTUB_YERPN  (Q1CNP0    ), 
BTUB_YERPP  (A4TRG0    ), BTUB_YERPS  (Q66G57    ), CIRA_ECOLI  (P17315    ), 
FATA_VIBA7  (P11461    ), FCUA_YEREN  (Q05202    ), FECA_ECOLI  (P13036    ), 
FEPA_ECOLI  (P05825    ), FHUA_ECOLI  (P06971    ), FHUE_ECOLI  (P16869    ), 
FOXA_YEREN  (Q01674    ), FPTA_PSEAE  (P42512    ), FPVA_PSEAE  (P48632    ), 
HGBA_HAEIF  (Q9KIV2    ), HGBB_HAEIF  (Q9KIV1    ), HGBC_HAEIF  (Q9KIV0    ), 
HGP1_HAEIN  (P44795    ), HGP2_HAEIN  (P44809    ), HGP3_HAEIN  (P44836    ), 
HGP4_HAEIN  (Q57408    ), HGPA_HAEIF  (Q9ZA21    ), HGPB_HAEIF  (O87296    ), 
HGPC_HAEIF  (Q9X442    ), HHUA_HAEIF  (Q48153    ), HPUB_NEIMA  (Q9JWA2    ), 
HPUB_NEIMC  (P96949    ), HXUC1_HAEIN (P44600    ), HXUC2_HAEIF (P45357    ), 
HXUC_HAEI8  (Q4QNS6    ), IRGA_VIBC3  (A5F9G0    ), IRGA_VIBCH  (P0C6R0    ), 
IUTA_ECOLX  (P14542    ), IUTA_KLEPN  (Q6U607    ), LBPA_NEIMA  (Q9JTK4    ), 
LBPA_NEIMB  (Q06379    ), PBUA_PSEU4  (Q08017    ), PFEA_PSEAE  (Q05098    ), 
PUPA_PSEPU  (P25184    ), PUPB_PSEPU  (P38047    ), TBP11_NEIMI (Q09056    ), 
TBP12_NEIMI (Q06987    ), TBP1_NEIGO  (Q01996    ), TBP1_NEIMB  (Q9K0U9    ), 
TBPA_HAEIN  (P44970    ), TDHA_HAEI8  (Q4QP67    ), TDHA_HAEIN  (P44523    ), 
Y1217_HAEIN (P45114    ), Y1497_NEIMB (Q7DDB6    )
» more

UniProtKB/Swiss-Prot
False negative sequences
32 sequences

BFRD_BORPE  (P81549    ), BHUA_BRUA2  (Q2YJB2    ), BHUA_BRUAB  (Q576D7    ), 
BHUA_BRUME  (Q8YDS0    ), BHUA_BRUO2  (A5VW32    ), BTUB_PHOLL  (Q7MYE3    ), 
BTUB_PHOPR  (Q6LLU3    ), BTUB_VIBCB  (A7MXY8    ), BTUB_VIBVY  (Q7MQ42    ), 
CEAB_ECOLX  (P05819    ), CEAD_ECOLX  (P17998    ), CEAM_ECOLX  (P05820    ), 
FCT_DICD3   (Q47162    ), FIU_ECO57   (Q8X7W7    ), FIU_ECOL6   (Q8CW90    ), 
FIU_ECOLI   (P75780    ), FIU_ECOUT   (Q1REC0    ), FOXA_SALTS  (E1W8M5    ), 
FOXA_SALTY  (P0CL48    ), FYUA_YERE8  (A1JTG3    ), FYUA_YEREN  (P0C2M9    ), 
FYUA_YERPE  (P46359    ), HEMR_YEREN  (P31499    ), HGBA_HAEDU  (Q47952    ), 
HMUR_YERPE  (Q56989    ), RHTA_RHIME  (Q9Z3Q5    ), SUSC_BACTN  (Q8A1G1    ), 
TDHA_HAEDU  (Q7VNU1    ), XLG1_ARATH  (O80462    ), Y146A_HAEIN (O86241    ), 
Y964_NEIMB  (Q9JZN9    ), YNCD_ECOLI  (P76115    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

SLAP1_THET8 (Q5SH37    )

		
PDB
[Detailed view]
38 PDB

1BY3; 1BY5; 1FCP; 1FI1; 1KMO; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; 1PO0; 1PO3; 1QFF; 1QFG; 1QJQ; 1QKC; 1UJW; 1XKH; 1XKW; 2FCP; 2GRX; 2GSK; 2IAH; 2O5P; 2W16; 2W6T; 2W6U; 2W75; 2W76; 2W77; 2W78; 2YSU; 3M8B; 3M8D; 3RGM; 3RGN; 3V89; 3V8X
» more

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