Entry: PS01156

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General information about the entry

Entry name [info] TONB_DEPENDENT_REC_2
Accession [info] PS01156
Entry type [info] PATTERN
Date [info] NOV-1995 (CREATED); DEC-2001 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00354

Name and characterization of the entry

Description [info] TonB-dependent receptor proteins signature 2.
Pattern [info]
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]-
[LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 78 in 78 different sequences
Number of true positive hits 77 in 77 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 32
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.72 %
Recall (true positives / (true positives + false negatives)) 70.64 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
77 sequences

BTUB_CITFR  (O52903), BTUB_CROS8  (A7ML93), BTUB_ECO24  (A7ZUI6), 
BTUB_ECO57  (Q8X714), BTUB_ECOHS  (A8A774), BTUB_ECOK1  (A1AIE8), 
BTUB_ECOL5  (Q0TA90), BTUB_ECOL6  (Q8CVJ0), BTUB_ECOLI  (P06129), 
BTUB_ECOLX  (Q93SE0), BTUB_ECOUT  (Q1R3U1), BTUB_ENT38  (A4WG45), 
BTUB_PECAS  (Q6CZB5), BTUB_SALCH  (Q57H87), BTUB_SALPA  (Q5PK67), 
BTUB_SALTI  (Q8Z314), BTUB_SALTY  (P37409), BTUB_SHIDS  (Q32AE6), 
BTUB_SHIF8  (Q0SY25), BTUB_SHIFL  (Q83IS4), BTUB_SHISS  (Q3YV10), 
BTUB_VIBC3  (A5F4P6), BTUB_VIBCH  (Q9KVI9), BTUB_VIBCM  (C3LPZ6), 
BTUB_VIBPA  (Q87KN9), BTUB_VIBVU  (Q8DD41), BTUB_YERP3  (A7FD14), 
BTUB_YERPA  (Q1CBU1), BTUB_YERPE  (Q8ZAA1), BTUB_YERPN  (Q1CNP0), 
BTUB_YERPP  (A4TRG0), BTUB_YERPS  (Q66G57), CIRA_ECOLI  (P17315), 
FATA_VIBA7  (P11461), FCUA_YEREN  (Q05202), FECA_ECOLI  (P13036), 
FEPA_ECOLI  (P05825), FHUA_ECOLI  (P06971), FHUE_ECOLI  (P16869), 
FOXA_YEREN  (Q01674), FPTA_PSEAE  (P42512), FPVA_PSEAE  (P48632), 
HGBA_HAEIF  (Q9KIV2), HGBB_HAEIF  (Q9KIV1), HGBC_HAEIF  (Q9KIV0), 
HGP1_HAEIN  (P44795), HGP2_HAEIN  (P44809), HGP3_HAEIN  (P44836), 
HGP4_HAEIN  (Q57408), HGPA_HAEIF  (Q9ZA21), HGPB_HAEIF  (O87296), 
HGPC_HAEIF  (Q9X442), HHUA_HAEIF  (Q48153), HPUB_NEIMA  (Q9JWA2), 
HPUB_NEIMC  (P96949), HXUC1_HAEIN (P44600), HXUC2_HAEIF (P45357), 
HXUC_HAEI8  (Q4QNS6), IRGA_VIBC3  (A5F9G0), IRGA_VIBCH  (P0C6R0), 
IUTA_ECOLX  (P14542), IUTA_KLEPN  (Q6U607), LBPA_NEIMA  (Q9JTK4), 
LBPA_NEIMB  (Q06379), PBUA_PSEU4  (Q08017), PFEA_PSEAE  (Q05098), 
PUPA_PSEPU  (P25184), PUPB_PSEPU  (P38047), TBP11_NEIMI (Q09056), 
TBP12_NEIMI (Q06987), TBP1_NEIGO  (Q01996), TBP1_NEIMB  (Q9K0U9), 
TBPA_HAEIN  (P44970), TDHA_HAEI8  (Q4QP67), TDHA_HAEIN  (P44523), 
Y1217_HAEIN (P45114), Y1497_NEIMB (Q7DDB6)
» More

UniProtKB/Swiss-Prot
False negative sequences
32 sequences

BFRD_BORPE  (P81549), BHUA_BRUA2  (Q2YJB2), BHUA_BRUAB  (Q576D7), 
BHUA_BRUME  (Q8YDS0), BHUA_BRUO2  (A5VW32), BTUB_PHOLL  (Q7MYE3), 
BTUB_PHOPR  (Q6LLU3), BTUB_VIBCB  (A7MXY8), BTUB_VIBVY  (Q7MQ42), 
CEAB_ECOLX  (P05819), CEAD_ECOLX  (P17998), CEAM_ECOLX  (P05820), 
FCT_DICD3   (Q47162), FIU_ECO57   (Q8X7W7), FIU_ECOL6   (Q8CW90), 
FIU_ECOLI   (P75780), FIU_ECOUT   (Q1REC0), FOXA_SALTS  (E1W8M5), 
FOXA_SALTY  (P0CL48), FYUA_YERE8  (A1JTG3), FYUA_YEREN  (P0C2M9), 
FYUA_YERPE  (P46359), HEMR_YEREN  (P31499), HGBA_HAEDU  (Q47952), 
HMUR_YERPE  (Q56989), RHTA_RHIME  (Q9Z3Q5), SUSC_BACTN  (Q8A1G1), 
TDHA_HAEDU  (Q7VNU1), XLG1_ARATH  (O80462), Y146A_HAEIN (O86241), 
Y964_NEIMB  (Q9JZN9), YNCD_ECOLI  (P76115)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

SLAP1_THET8 (Q5SH37)

		

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