Entry: PS01164

General information about the entry
Entry name COPPER_AMINE_OXID_1
Accession number PS01164
Entry type PATTERN
Date NOV-1997 (CREATED); MAY-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00895
Name and characterization of the entry
DescriptionCopper amine oxidase topaquinone signature.
Pattern [LIVM]-[LIVMA]-[LIVMF]-x(4)-[ST]-x(2)-N-Y-[DE]-[YN].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 27 hits in 27 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 25 hits in 25 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 92.59 %
  • Recall (true hits / (true hits + false negatives)): 96.15 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 8,cofactor_TPQ
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ABP1_HUMAN  (P19801), ABP1_MOUSE  (Q8JZQ5), ABP1_RAT    (P36633), 
AMO1_ARTS1  (Q07121), AMO1_ASPNG  (Q12556), AMO2_ARTS1  (Q07123), 
AMOH_ARTGO  (Q59118), AMO_ECOLI   (P46883), AMO_ENTAE   (P49250), 
AMO_KLEOK   (P80695), AMO_LENCU   (P49252), AMO_PEA     (Q43077), 
AMO_PICAN   (P12807), AMO_PINMG   (H2A0M3), AOC2_HUMAN  (O75106), 
AOC2_MOUSE  (Q812C9), AOC3_BOVIN  (Q9TTK6), AOC3_HUMAN  (Q16853), 
AOC3_MOUSE  (O70423), AOC3_RAT    (O08590), AOCX_BOVIN  (Q29437), 
AOCY_BOVIN  (O46406), CAO1_SCHPO  (Q9P7F2), CAO2_SCHPO  (O42890), 
PAOX_ARTGO  (P46881)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AMO_ARATH   (Q8H1H9)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
ABP1_PIG    (Q9TRC7)
False positive hits (sequences which do not belong to the set under consideration):
CHAC_YEAST  (P32656), TOP2_IIV3   (Q196X4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AVK; 1EKM; 1IVU; 1UI7; 1WMP; 2WGQ; 3SX1; 3SXX; 3T0U;

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