Entry: PS01165

General information about the entry
Entry name COPPER_AMINE_OXID_2
Accession number PS01165
Entry type PATTERN
Date NOV-1997 (CREATED); JUL-1999 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00895
Name and characterization of the entry
DescriptionCopper amine oxidase copper-binding site signature.
Pattern T-x-[GS]-x(2)-H-[LIVMF]-x(3)-E-[DE]-x-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 24 hits in 24 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 23 hits in 23 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 95.83 %
  • Recall (true hits / (true hits + false negatives)): 85.19 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 5,copper
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ABP1_HUMAN  (P19801), ABP1_MOUSE  (Q8JZQ5), ABP1_RAT    (P36633), 
AMO1_ARTS1  (Q07121), AMO2_ARTS1  (Q07123), AMO_ARATH   (Q8H1H9), 
AMO_ECOLI   (P46883), AMO_ENTAE   (P49250), AMO_KLEOK   (P80695), 
AMO_PICAN   (P12807), AMO_PINMG   (H2A0M3), AOC2_HUMAN  (O75106), 
AOC2_MOUSE  (Q812C9), AOC3_BOVIN  (Q9TTK6), AOC3_HUMAN  (Q16853), 
AOC3_MOUSE  (O70423), AOC3_PONAB  (Q5R9I0), AOC3_RAT    (O08590), 
AOCX_BOVIN  (Q29437), AOCY_BOVIN  (O46406), CAO1_SCHPO  (Q9P7F2), 
CAO2_SCHPO  (O42890), PAOX_ARTGO  (P46881)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AMO1_ASPNG  (Q12556), AMOH_ARTGO  (Q59118), AMO_LENCU   (P49252), 
AMO_PEA     (Q43077)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
ABP1_PIG    (Q9TRC7)
False positive hits (sequences which do not belong to the set under consideration):
THII_PSEPK  (Q88CY4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A2V; 1AV4; 1AVK; 1AVL; 1D6U; 1D6Y; 1D6Z; 1DYU; 1EKM; 1IQX; 1IQY; 1IU7; 1IVU; 1IVV; 1IVW; 1IVX; 1JRQ; 1LVN; 1OAC; 1PU4; 1QAF; 1QAK; 1QAL; 1RJO; 1SIH; 1SII; 1SPU; 1TU5; 1UI7; 1US1; 1W4N; 1W5Z; 1W6C; 1W6G; 1WMN; 1WMO; 1WMP; 2BT3; 2C10; 2C11; 2CFD; 2CFG; 2CFK; 2CFL; 2CFW; 2CG0; 2CG1; 2CWT; 2CWU; 2CWV; 2D1W; 2E2T; 2E2U; 2E2V; 2OOV; 2OQE; 2PNC; 2W0Q; 2WGQ; 2WO0; 2WOF; 2WOH; 2Y73; 2Y74; 2YX9; 2ZL8; 3ALA; 3AMO; 3HI7; 3HIG; 3HII; 3K5T; 3KII; 3KN4; 3MPH; 3N9H; 3NBB; 3NBJ; 3SX1; 3SXX; 3T0U; 4EV2; 4EV5;

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