Entry: PS01172

General information about the entry
Entry name RIBOSOMAL_L44E
Accession number PS01172
Entry type PATTERN
Date NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00902
Name and characterization of the entry
DescriptionRibosomal protein L44e signature.
Pattern K-x-[TV]-K-K-x(2)-L-[KR]-x(2)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 51 hits in 51 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 51 hits in 51 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 5
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 91.07 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RL36A_ARATH (O23290), RL36A_BOVIN (Q3SZ59), RL36A_CANFA (D0VWQ4), 
RL36A_DANRE (P61485), RL36A_DICDI (Q55CW5), RL36A_HUMAN (P83881), 
RL36A_ICTPU (P61487), RL36A_MOUSE (P83882), RL36A_PAPAN (A9L948), 
RL36A_PIG   (P83884), RL36A_RAT   (P83883), RL36A_TAKRU (P61486), 
RL36A_TETTS (Q22X38), RL36L_HUMAN (Q969Q0), RL36L_PONAB (Q5R9D2), 
RL44A_YEAST (P0CX27), RL44B_YEAST (P0CX28), RL44E_DESK1 (B8D537), 
RL44E_HALMA (P32411), RL44E_METJA (P54027), RL44E_METTH (O27365), 
RL44E_NATPD (Q3ISI8), RL44E_PYRAB (Q9UXZ2), RL44E_PYRFU (Q8U475), 
RL44E_PYRHO (O59603), RL44P_CANMA (Q00477), RL44Q_CANMA (P27074), 
RL44_AEDTR  (Q9NB33), RL44_ASHGO  (Q754N8), RL44_BRUMA  (P90702), 
RL44_CAEEL  (P48166), RL44_CANGY  (Q4PNY0), RL44_CANTR  (P27075), 
RL44_CHLRE  (P49213), RL44_COPC7  (A8PCG3), RL44_COPCI  (Q9UWE4), 
RL44_CRYNB  (P0CQ51), RL44_CRYNJ  (P0CQ50), RL44_CYBJA  (P52809), 
RL44_DEBHA  (Q6BLK0), RL44_GOSHI  (Q96499), RL44_KLULA  (P31027), 
RL44_KLUMA  (P27076), RL44_PHARH  (O59870), RL44_PICGU  (P31866), 
RL44_PLAF7  (O97231), RL44_SCHOC  (P31028), RL44_SCHPO  (Q9UTI8), 
RL44_TRYBB  (P17843), RL44_WICCF  (Q9UVB8), RL44_YARLI  (Q6CFS7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RL44E_AERPE (Q9YF00), RL44E_ARCFU (O28936), RL44E_HALSA (Q9HRT6), 
RL44E_THEAC (Q9HIX1), RL44E_THEU7 (F2L1X6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1FFK; 1JJ2; 1K5Y; 1K73; 1K8A; 1K9M; 1KC8; 1KD1; 1KQS; 1M1K; 1M90; 1N8R; 1NJI; 1Q7Y; 1Q81; 1Q82; 1Q86; 1QVF; 1QVG; 1S1I; 1S72; 1VQ4; 1VQ5; 1VQ6; 1VQ7; 1VQ8; 1VQ9; 1VQK; 1VQL; 1VQM; 1VQN; 1VQO; 1VQP; 1W2B; 1YHQ; 1YI2; 1YIJ; 1YIT; 1YJ9; 1YJN; 1YJW; 2OTJ; 2OTL; 2QA4; 2QEX; 2ZKR; 3CC2; 3CC4; 3CC7; 3CCE; 3CCJ; 3CCL; 3CCM; 3CCQ; 3CCR; 3CCS; 3CCU; 3CCV; 3CD6; 3CMA; 3CME; 3CPW; 3CXC; 3G4S; 3G6E; 3G71; 3I55; 3I56; 3IZS; 3J21; 3O58; 3O5H; 3OW2; 3U5E; 3U5I; 4A18; 4A19; 4A1B; 4A1D; 4B6A;

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