Entry: PS01175

General information about the entry
Entry name RIBONUCLEASE_II
Accession number PS01175
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00904
Name and characterization of the entry
DescriptionRibonuclease II family signature.
Pattern [HI]-[FYE]-[GSTAM]-[LIVM]-x(4,5)-Y-[STALV]-x-[FWVAC]-[TV]-[SA]-P-[LIVMA]- [RQ]-[KR]-[FY]-x-D-x(3)-[HQ].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 133 hits in 133 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 132 hits in 132 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 99.25 %
  • Recall (true hits / (true hits + false negatives)): 95.65 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CYT4_NEUCR  (P47950), DI3L1_BOVIN (A0JN80), DI3L1_DANRE (A2RV18), 
DI3L1_HUMAN (Q8TF46), DI3L1_MOUSE (Q8C0S1), DI3L1_PONAB (Q5R5N8), 
DI3L1_RAT   (Q5U2P0), DI3L1_XENLA (Q6GN11), DI3L1_XENTR (Q0P4R5), 
DI3L2_HUMAN (Q8IYB7), DI3L2_MOUSE (Q8CI75), DI3L2_XENTR (Q0V9R3), 
DIS3L_SCHPO (O14040), DIS3_SCHPO  (P37202), DSS1_YEAST  (P39112), 
RNB_ACTSZ   (A6VN85), RNB_AERHH   (A0KFR1), RNB_BAUCH   (Q1LTG8), 
RNB_BUCA5   (B8D959), RNB_BUCAI   (P57354), RNB_BUCAP   (Q8K9Q5), 
RNB_BUCAT   (B8D7G3), RNB_BUCBP   (Q89AM0), RNB_BUCCC   (Q057Q9), 
RNB_CITK8   (A8AG96), RNB_CROS8   (A7MMD8), RNB_ECO24   (A7ZLA9), 
RNB_ECO27   (B7UR96), RNB_ECO45   (B7MLW3), RNB_ECO55   (B7L4C3), 
RNB_ECO57   (Q8X7D6), RNB_ECO5E   (B5YZR8), RNB_ECO7I   (B7NVR1), 
RNB_ECO8A   (B7LY47), RNB_ECOBW   (C4ZTY2), RNB_ECODH   (B1XBN7), 
RNB_ECOHS   (A7ZZM6), RNB_ECOK1   (A1AAQ4), RNB_ECOL5   (Q0TI78), 
RNB_ECOL6   (Q8FHT6), RNB_ECOLC   (B1ITG7), RNB_ECOLI   (P30850), 
RNB_ECOLU   (B7N4A3), RNB_ECOSE   (B6IA03), RNB_ECOSM   (B1LGE7), 
RNB_ECOUT   (Q1RC77), RNB_EDWTE   (D0Z8E6), RNB_ENT38   (A4WAX5), 
RNB_ERWCT   (Q6D5S7), RNB_ERWT9   (B2VKS8), RNB_ESCF3   (B7LRZ1), 
RNB_HAEDU   (Q7VLX8), RNB_HAEI8   (Q4QJL5), RNB_HAEIG   (A5UFG3), 
RNB_HAEIN   (P44440), RNB_KLEP3   (B5XS03), RNB_KLEP7   (A6T7Z4), 
RNB_MANSM   (Q65SI5), RNB_PASMU   (Q9CP74), RNB_PECCP   (C6DK05), 
RNB_PHOLL   (Q7N4F5), RNB_PROMH   (B4EW02), RNB_PSYIN   (A1SWZ6), 
RNB_SALA4   (B5F571), RNB_SALAR   (A9MQ20), RNB_SALCH   (Q57NV9), 
RNB_SALDC   (B5FU93), RNB_SALEP   (B5R490), RNB_SALG2   (B5R9Y0), 
RNB_SALHS   (B4TJI0), RNB_SALNS   (B4T6U4), RNB_SALPA   (Q5PCZ6), 
RNB_SALPB   (A9MWU8), RNB_SALPC   (C0Q3R1), RNB_SALPK   (B5BIE3), 
RNB_SALSV   (B4TX11), RNB_SALTI   (Q8Z7C9), RNB_SALTY   (Q8ZP54), 
RNB_SERP5   (A8GF49), RNB_SHIB3   (B2U0I4), RNB_SHIBS   (Q31ZY2), 
RNB_SHIDS   (Q32GP4), RNB_SHIF8   (Q0T5B1), RNB_SHIFL   (P59107), 
RNB_SHISS   (Q3Z135), RNB_SODGM   (Q2NST6), RNB_VIBC3   (A5F0G1), 
RNB_VIBCH   (Q9KLE1), RNB_VIBCM   (C3LW69), RNB_VIBPA   (Q87IJ9), 
RNB_VIBSL   (B7VSB8), RNB_VIBVU   (Q8D7K6), RNB_VIBVY   (Q7MEL4), 
RNB_XENBS   (D3V184), RNB_YERE8   (A1JM34), RNB_YERP3   (A7FI01), 
RNB_YERPA   (Q1C7L1), RNB_YERPB   (B2K4J2), RNB_YERPE   (Q8ZED8), 
RNB_YERPG   (A9R8T9), RNB_YERPN   (Q1CIZ7), RNB_YERPP   (A4TJ37), 
RNB_YERPS   (Q66AH3), RNB_YERPY   (B1JKP2), RNR1_LACLA  (Q9CH00), 
RNR2_LACLA  (Q02146), RNR_AQUAE   (O67834), RNR_BACSU   (O32231), 
RNR_BUCAI   (P57628), RNR_BUCAP   (Q8K917), RNR_CHLMU   (Q9PK00), 
RNR_CHLPN   (Q9Z848), RNR_CHLTR   (O84402), RNR_ECOLI   (P21499), 
RNR_HAEIN   (P44907), RNR_HELPJ   (Q9ZJX9), RNR_HELPY   (P56123), 
RNR_MYCGE   (P47350), RNR_MYCPN   (P75529), RNR_MYCPU   (Q98QL0), 
RNR_SHIFL   (P30851), RNR_THEMA   (Q9WZI1), RNR_UREPA   (Q9PR88), 
RNR_VIBCH   (Q9KNY1), RNR_VIBPA   (P40611), RRP44_CAEEL (Q17632), 
RRP44_HUMAN (Q9Y2L1), RRP44_MOUSE (Q9CSH3), RRP44_YEAST (Q08162), 
SSD1_YEAST  (P24276), YR86_CAEEL  (Q09568), ZAM_SYNY3   (Q46363)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RNB_ACTP2   (A3N0B9), RNB_ACTP7   (B3GXJ4), RNB_ACTPJ   (B0BP37), 
RNB_HAEPS   (B8F4C5), STS5_SCHPO  (O74454), YBU1_SCHPO  (O94525)
False positive hits (sequences which do not belong to the set under consideration):
HELZ2_HUMAN (Q9BYK8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 2ID0; 2IX0; 2IX1; 2VNU; 2WP8; 4IFD;

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