Entry: PS01185

General information about the entry
Entry name CTCK_1
Accession number PS01185
Entry type PATTERN
Date NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00912
Name and characterization of the entry
DescriptionC-terminal cystine knot signature.
Pattern C-C-x(13)-C-x(2)-[GN]-x(12)-C-x-C-x(2,4)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 48 hits in 48 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 48 hits in 48 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 33
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 59.26 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 2,disulfide
  • `Interesting' site in the pattern: 4,disulfide
  • `Interesting' site in the pattern: 8,disulfide
  • `Interesting' site in the pattern: 10,disulfide
  • `Interesting' site in the pattern: 12,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CTGF_BOVIN  (O18739), CTGF_HUMAN  (P29279), CTGF_MOUSE  (P29268), 
CTGF_PIG    (O19113), CTGF_RAT    (Q9R1E9), CYR61_CHICK (P19336), 
CYR61_HUMAN (O00622), CYR61_MOUSE (P18406), CYR61_PANTR (A5A6L1), 
CYR61_RAT   (Q9ES72), GPHA2_MOUSE (Q925Q5), GPHA2_RAT   (Q925Q4), 
HMCT_BOMMO  (P98092), MUC19_HUMAN (Q7Z5P9), MUC19_MOUSE (Q6PZE0), 
MUC2L_RAT   (P98089), MUC2_HUMAN  (Q02817), MUC2_MOUSE  (Q80Z19), 
MUC5A_HUMAN (P98088), MUC5B_HUMAN (Q9HC84), MUCAP_PIG   (P12021), 
MUCB1_XENLA (P38565), MUCS_BOVIN  (P98091), NDP_BOVIN   (Q2KI78), 
NDP_HUMAN   (Q00604), NDP_MACFA   (Q60HE4), NDP_MOUSE   (P48744), 
NOV_CHICK   (P28686), NOV_COTJA   (P42642), NOV_HUMAN   (P48745), 
NOV_MOUSE   (Q64299), NOV_RAT     (Q9QZQ5), SLIT1_HUMAN (O75093), 
SLIT1_MOUSE (Q80TR4), SLIT1_RAT   (O88279), SLIT2_HUMAN (O94813), 
SLIT2_MOUSE (Q9R1B9), SLIT3_HUMAN (O75094), SLIT3_MOUSE (Q9WVB4), 
SLIT3_RAT   (O88280), SLIT_DROME  (P24014), VWF_CANFA   (Q28295), 
VWF_HUMAN   (P04275), VWF_MOUSE   (Q8CIZ8), VWF_PIG     (Q28833), 
WISP1_HUMAN (O95388), WISP1_MOUSE (O54775), WISP1_RAT   (Q99PP0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BURS_AEDAE  (P85316), BURS_ANOGA  (Q66Q82), BURS_APIME  (A2VB89), 
BURS_BOMMO  (Q566B1), BURS_CULPP  (P85315), BURS_DROME  (Q9VD83), 
BURS_MANSE  (Q4FCM6), CER1_CHICK  (Q9PWB0), CER1_HUMAN  (O95813), 
CER1_MOUSE  (O55233), CER1_XENLA  (P70041), CER1_XENTR  (Q07G34), 
NOV_XENLA   (P51609), PBURS_ANOGA (Q566B3), PBURS_APIME (A2VB90), 
PBURS_BOMMO (Q566B2), PBURS_DROME (Q9VJS7), SOSD1_CHICK (Q6VYA3), 
SOSD1_HUMAN (Q6X4U4), SOSD1_MOUSE (Q9CQN4), SOSD1_PONAB (Q5R5D2), 
SOSD1_RAT   (Q642G2), SOST_BOVIN  (Q9BG79), SOST_CHLAE  (Q9BG78), 
SOST_HUMAN  (Q9BQB4), SOST_MOUSE  (Q99P68), SOST_RAT    (Q99P67), 
SSPO_BOVIN  (P98167), SSPO_CHICK  (Q2PC93), SSPO_HUMAN  (A2VEC9), 
SSPO_MOUSE  (Q8CG65), SSPO_RAT    (Q700K0), WISP3_HUMAN (O95389)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
BURS_PERAM  (P84118), VWF_BOVIN   (P80012)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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