Entry: PS01200

General information about the entry
Entry name TUB_1
Accession number PS01200
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00923
Name and characterization of the entry
DescriptionTub family signature 1.
Pattern F-[KRHQ]-G-R-V-[ST]-x-A-S-V-K-N-F-Q.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 48 hits in 48 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 48 hits in 48 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.12 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
TLP10_ARATH (Q9FRH7), TLP10_ORYSJ (Q688Y7), TLP11_ARATH (Q6NPQ1), 
TLP11_ORYSJ (Q8H485), TLP12_ORYSJ (Q69U54), TLP13_ORYSJ (Q53PP5), 
TLP14_ORYSJ (Q2QXB2), TLP1_ARATH  (Q9ZP59), TLP1_ORYSJ  (Q5QM27), 
TLP2_ARATH  (Q8GVE5), TLP3_ORYSJ  (Q8LJA9), TLP5_ARATH  (Q944S3), 
TLP5_ORYSJ  (Q6Z2G9), TLP6_ARATH  (Q0WPY0), TLP6_ORYSJ  (Q10LG8), 
TLP7_ARATH  (Q93VI8), TLP7_ORYSJ  (Q7XSV4), TLP8_ORYSJ  (Q75HX5), 
TLP9_ARATH  (Q9SQU1), TLP9_ORYSJ  (Q68Y48), TUB1_CAEBR  (A8WN62), 
TUB1_CAEEL  (Q09306), TUB_HUMAN   (P50607), TUB_MOUSE   (P50586), 
TUB_RAT     (O88808), TULP1_AEDAE (Q16KI5), TULP1_CULQU (B0XFQ9), 
TULP1_HUMAN (O00294), TULP1_MOUSE (Q9Z273), TULP2_AEDAE (Q16IR1), 
TULP2_CULQU (B0WI30), TULP2_HUMAN (O00295), TULP2_MOUSE (P46686), 
TULP3_HUMAN (O75386), TULP3_MOUSE (O88413), TULP_ANOGA  (Q7PZK5), 
TULP_DROAN  (B3MDU3), TULP_DROER  (B3NJY0), TULP_DROGR  (B4J6R7), 
TULP_DROME  (Q86PC9), TULP_DROMO  (B4KNA9), TULP_DROPE  (B4H4X0), 
TULP_DROPS  (Q28X18), TULP_DROSE  (B4I7J9), TULP_DROSI  (B4QFM2), 
TULP_DROVI  (B4LMR9), TULP_DROWI  (B4MKC7), TULP_DROYA  (B4P9H8)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
TLP2_ORYSJ  (Q94DT9), TLP3_ARATH  (Q8VY21), TLP4_ORYSJ  (Q6ETL2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1C8Z; 1I7E; 1S31; 2FIM; 3C5N;

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