Due to maintenance work, this service may be impaired on Sunday February 1st between 12.00 pm and 06.00 pm CEST.
Entry: PS01204

Forthcoming changes to the profile format
General information about the entry

Entry name [info] REL_1
Accession [info] PS01204
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); DEC-2001 (DATA UPDATE); DEC-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00924

Name and characterization of the entry

Description [info] NF-kappa-B/Rel/dorsal domain signature.
Pattern [info]
F-R-Y-x-C-E-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_01 which contains 547'357 sequence entries.


Total number of hits 23 in 23 different sequences
Number of true positive hits 23 in 23 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 13
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 63.89 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
23 sequences

DIF_DROME   (P98149), DORS_DROME  (P15330), NFKB1_CANFA (Q6F3J0), 
NFKB1_CHICK (Q04861), NFKB1_HUMAN (P19838), NFKB1_MOUSE (P25799), 
NFKB2_CHICK (P98150), NFKB2_HUMAN (Q00653), NFKB2_MOUSE (Q9WTK5), 
NFKB2_XENLA (O73630), RELB_CHICK  (P51509), RELB_HUMAN  (Q01201), 
RELB_MOUSE  (Q04863), RELB_XENLA  (P51510), REL_AVIRE   (P01126), 
REL_CHICK   (P16236), REL_HUMAN   (Q04864), REL_MELGA   (P01125), 
REL_MOUSE   (P15307), TF65_CHICK  (P98152), TF65_HUMAN  (Q04206), 
TF65_MOUSE  (Q04207), TF65_XENLA  (Q04865)
» More

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

NFAC1_BOVIN (P98201), NFAC1_HUMAN (O95644), NFAC1_MOUSE (O88942), 
NFAC1_PIG   (O77638), NFAC2_HUMAN (Q13469), NFAC2_MOUSE (Q60591), 
NFAC3_HUMAN (Q12968), NFAC3_MOUSE (P97305), NFAC4_HUMAN (Q14934), 
NFAC4_MOUSE (Q8K120), NFAT5_HUMAN (O94916), NFAT5_MOUSE (Q9WV30), 
NFKB1_DROME (Q94527)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

NFKB1_RAT   (Q63369)

		
PDB
[Detailed view]
20 PDB

1A3Q; 1GJI; 1IKN; 1LE5; 1LE9; 1LEI; 1MDI; 1MDJ; 1MDK; 1NFI; 1NFK; 1OOA; 1RAM; 1VKX; 2I9T; 2O61; 2RAM; 2V2T; 3DO7; 3GUT
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission