Entry: PS01207

General information about the entry
Entry name GLYPICAN
Accession number PS01207
Entry type PATTERN
Date NOV-1997 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00927
Name and characterization of the entry
DescriptionGlypicans signature.
Pattern C-x(2)-C-x-[GS]-[LIVM]-x(4)-P-C-x(2)-[FY]-C-x(2)-[LIVM]-x(2)-G-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 20 hits in 20 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 20 hits in 20 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 95.24 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
GPC1_BOVIN  (G3X745), GPC1_CHICK  (P50593), GPC1_DANRE  (F1QCC6), 
GPC1_HUMAN  (P35052), GPC1_MOUSE  (Q9QZF2), GPC1_RAT    (P35053), 
GPC2_HUMAN  (Q8N158), GPC2_MOUSE  (Q8BKV1), GPC2_RAT    (P51653), 
GPC3_HUMAN  (P51654), GPC3_MOUSE  (Q8CFZ4), GPC3_PANTR  (A5A6P7), 
GPC3_RAT    (P13265), GPC4_HUMAN  (O75487), GPC4_MOUSE  (P51655), 
GPC5_HUMAN  (P78333), GPC5_MOUSE  (Q8CAL5), GPC6_HUMAN  (Q9Y625), 
GPC6_MOUSE  (Q9R087), GPC6_PONAB  (Q5RE54)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
DALY_DROME  (Q24114)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 4ACR; 4AD7;

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