Entry: PS01216

General information about the entry
Entry name SUCCINYL_COA_LIG_1
Accession number PS01216
Entry type PATTERN
Date NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00335
Name and characterization of the entry
DescriptionATP-citrate lyase / succinyl-CoA ligases family signature 1.
Pattern S-[KR]-S-G-[GT]-[LIVM]-[GST]-x-[EQ]-x(8,10)-G-x(4)-[LIVM]-[GA]-[LIVM]-G- G-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 62 hits in 62 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 62 hits in 62 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 8
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.57 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ACL1_NEUCR  (Q8X097), ACL1_SCHPO  (Q9P7W3), ACL1_SORMK  (O93988), 
ACLB1_ARATH (Q9C522), ACLB1_ORYSJ (Q93VT8), ACLB2_ARATH (Q9FGX1), 
ACLY_BOVIN  (Q32PF2), ACLY_CAEEL  (P53585), ACLY_DICDI  (Q54YA0), 
ACLY_HUMAN  (P53396), ACLY_MOUSE  (Q91V92), ACLY_RAT    (P16638), 
ACLY_SHEEP  (Q2TCH3), MTKB_METEA  (P53595), SUCA1_ARATH (P68209), 
SUCA1_SOLLC (Q8GTQ9), SUCA1_TRIVA (P53399), SUCA2_ARATH (Q8LAD2), 
SUCA2_SOLLC (Q6DQL1), SUCA2_TRIVA (P53400), SUCA3_TRIVA (P53401), 
SUCA_BOVIN  (Q58DR8), SUCA_CAEEL  (P53596), SUCA_COLLI  (Q9YGD2), 
SUCA_DICDI  (P36967), SUCA_DROME  (Q94522), SUCA_HUMAN  (P53597), 
SUCA_MOUSE  (Q9WUM5), SUCA_NEUCR  (Q9P727), SUCA_ORYSJ  (Q6ZL94), 
SUCA_PIG    (O19069), SUCA_RAT    (P13086), SUCA_SCHPO  (O13750), 
SUCA_YEAST  (P53598), SUCD1_ARCFU (O28733), SUCD2_ARCFU (O28098), 
SUCD_AQUAE  (O67547), SUCD_BACSU  (P80865), SUCD_COXBU  (P53591), 
SUCD_ECO57  (P0AGF1), SUCD_ECOL6  (P0AGF0), SUCD_ECOLI  (P0AGE9), 
SUCD_HAEIN  (P45102), SUCD_METJA  (Q58643), SUCD_METTH  (O26663), 
SUCD_MYCBO  (Q7U0Z0), SUCD_MYCTU  (P71558), SUCD_PSEAE  (Q51567), 
SUCD_RICBR  (Q1RH56), SUCD_RICCN  (Q92I22), SUCD_RICFE  (Q4ULQ8), 
SUCD_RICPR  (O08371), SUCD_RICTY  (Q9AKE1), SUCD_STAAC  (Q5HGI6), 
SUCD_STAAM  (P66866), SUCD_STAAN  (P99070), SUCD_STAAR  (Q6GHI9), 
SUCD_STAAS  (Q6G9W7), SUCD_STAAW  (Q8NX01), SUCD_STAEQ  (Q5HPU4), 
SUCD_STAES  (Q8CPH4), SUCD_THETH  (P09143)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ACL2_SCHPO  (O13907), ACLA1_ARATH (Q9SGY2), ACLA1_ORYSJ (Q53JY8), 
ACLA2_ARATH (O22718), ACLA2_ORYSJ (Q2QZ86), ACLA3_ARATH (O80526), 
ACLA3_ORYSJ (Q2QNG7), SUCB_SOLLC  (Q84LB6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1CQI; 1CQJ; 1EUC; 1EUD; 1JKJ; 1JLL; 1OI7; 1SCU; 2FP4; 2FPG; 2FPI; 2FPP; 2NU6; 2NU7; 2NU8; 2NU9; 2NUA; 2SCU; 2YV1; 3MWE; 3PFF; 3UFX;

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