Entry: PS01219

General information about the entry
Entry name AMMONIUM_TRANSP
Accession number PS01219
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00937
Name and characterization of the entry
DescriptionAmmonium transporters signature.
Pattern D-[FYWS]-[AS]-G-[GSC]-x(2)-[IV]-x(3)-[SAG](2)-x(2)-[SAG]-[LIVMF]-x(3)- [LIVMFYWA](2)-x-[GK]-x-R.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 40 hits in 40 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 40 hits in 40 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 97.56 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AMT11_ARATH (P54144), AMT11_ORYSJ (Q7XQ12), AMT11_SOLLC (P58905), 
AMT12_ARATH (Q9ZPJ8), AMT12_ORYSJ (Q6K9G1), AMT12_SOLLC (O04161), 
AMT13_ARATH (Q9SQH9), AMT13_ORYSJ (Q6K9G3), AMT13_SOLLC (Q9FVN0), 
AMT14_ARATH (Q9SVT8), AMT15_ARATH (Q9LK16), AMT1_CAEEL  (P54145), 
AMT1_DICDI  (Q9BLG4), AMT1_SCHPO  (Q9C0V1), AMT21_ORYSJ (Q84KJ7), 
AMT22_ORYSJ (Q8S230), AMT23_ORYSJ (Q8S233), AMT2_ARATH  (Q9M6N7), 
AMT2_CAEEL  (Q20605), AMT2_DICDI  (Q9BLG3), AMT31_ORYSJ (Q84KJ6), 
AMT33_ORYSJ (Q69T29), AMT3_CAEEL  (Q21565), AMTB_ECO57  (P69680), 
AMTB_ECOLI  (P69681), AMT_AQUAE   (O66515), AMT_CORGL   (P54146), 
AMT_MYCBO   (P63520), AMT_MYCTU   (P63519), MEP1_YEAST  (P40260), 
MEP2_YEAST  (P41948), MEP3_YEAST  (P53390), NRGA_BACSU  (Q07429), 
Y058_METJA  (Q60366), Y1017_SYNY3 (P72935), Y108_SYNY3  (P54147), 
Y1343_METJA (Q58739), Y537_SYNY3  (P54148), Y661_METTH  (O26757), 
Y663_METTH  (O26759)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AMT3_SCHPO  (Q9P7F3)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1U77; 1U7C; 1U7G; 2NPK; 2NS1; 2NUU;

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