Entry: PS01228

General information about the entry

Entry name [info] COF_1
Accession [info] PS01228
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00944

Name and characterization of the entry

Description [info] Hypothetical cof family signature 1.
Pattern [info]
[LIVFYAN]-[LIVMFA]-x(2)-D-[LIVMF]-[ND]-G-T-[LIV]-[LVY]-[STANLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 96 in 96 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits 0
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 11
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 82.29 %
Recall (true positives / (true positives + false negatives)) 87.78 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

COF_CITK8   (A8AK07), COF_ECO24   (A7ZIK4), COF_ECO27   (B7UJR9), 
COF_ECO45   (B7MDA5), COF_ECO55   (B7L683), COF_ECO57   (Q8XE50), 
COF_ECO5E   (B5Z3V4), COF_ECO7I   (B7NJ48), COF_ECO81   (B7MQG2), 
COF_ECO8A   (B7M3T9), COF_ECOBW   (C4ZTK3), COF_ECODH   (B1XFN4), 
COF_ECOHS   (A7ZXA4), COF_ECOK1   (A1A8B5), COF_ECOL5   (Q0TKJ5), 
COF_ECOL6   (Q8FKA2), COF_ECOLI   (P46891), COF_ECOLU   (B7N900), 
COF_ECOSE   (B6HZQ3), COF_ECOSM   (B1LJK3), COF_ECOUT   (Q1RF89), 
COF_ENT38   (A4W7B7), COF_ESCF3   (B7LMD3), COF_KLEP3   (B5Y0T3), 
COF_KLEP7   (A6T5I9), COF_SALA4   (B5EXJ7), COF_SALAR   (A9MM14), 
COF_SALCH   (Q57SA6), COF_SALDC   (B5FKW1), COF_SALEP   (B5QU47), 
COF_SALG2   (B5R6V8), COF_SALHS   (B4T9F2), COF_SALNS   (B4SWV0), 
COF_SALPA   (Q5PFM4), COF_SALPB   (A9MWC0), COF_SALPK   (B5BD74), 
COF_SALSV   (B4TMD5), COF_SALTI   (Q8Z8U7), COF_SALTY   (Q8ZRB6), 
COF_SERP5   (A8GAR8), COF_SHIB3   (B2U4Q1), COF_SHIBS   (Q325F5), 
COF_SHIF8   (Q0T7D7), COF_SHIFL   (Q83M49), COF_SHISS   (Q3Z4V2), 
COF_YERE8   (A1JNL2), COF_YERP3   (A7FLB5), COF_YERPA   (Q1C4L7), 
COF_YERPB   (B2K6W6), COF_YERPE   (Q7CK25), COF_YERPG   (A9QZP3), 
COF_YERPN   (Q1CL56), COF_YERPP   (A4TPD3), COF_YERPS   (Q66DS5), 
COF_YERPY   (B1JHR2), GPMPP_PERMH (C0QRP9), Y003_HAEIN  (P44447), 
Y028_BUCAI  (P57140), Y029_BUCAP  (Q8KA73), Y030_BUCBP  (Q89B25), 
Y125_MYCGE  (P47371), Y263_MYCGE  (P47505), Y264_MYCPN  (P75511), 
Y265_MYCGE  (P47507), Y381_MYCPN  (P75401), Y383_MYCPN  (P75399), 
Y533_STRP6  (Q5XD45), Y597_HAEIN  (P44771), Y732_MYCCT  (P53661), 
YBHA_ECOLI  (P21829), YCSE_BACSU  (P42962), YIDA_ECOL6  (P0A8Y6), 
YIDA_ECOLI  (P0A8Y5), YIDA_SHIFL  (P0A8Y7), YIGL_ECO57  (Q8X8L6), 
YIGL_ECOLI  (P27848), YUPP_MYCHO  (P43051), YWPJ_BACSU  (P94592), 
YXEH_BACSU  (P54947)
» More

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

BPPI_STRP6  (Q5XAQ1), COF_CROS8   (A7MFJ6), COF_ECOLC   (B1IZE7), 
COF_SHIDS   (Q32JB1), NTDB_BACSU  (O07565), SUPH_ECOLI  (P75792), 
Y427_MYCPN  (P75360), YBJI_ECOLI  (P75809), YITU_BACSU  (P70947), 
YKRA_BACSU  (Q45494), YWTE_BACSU  (P96741)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

YPDA_GEOSE  (P21878)

		
UniProtKB/Swiss-Prot
False positive sequences
17 sequences

GPH_HAEI8   (Q4QMY0), GPH_HAEIN   (P44755), GPH_MANSM   (Q65Q22), 
GPH_PASMU   (Q9CKJ5), GPH_THIDA   (Q3SGR5), LCAP_HUMAN  (Q9UIQ6), 
LCAP_MOUSE  (Q8C129), LCAP_RAT    (P97629), MKS3_HUMAN  (Q5HYA8), 
MPGP_SALCH  (Q57N15), MPGP_SALPA  (Q5PLI3), MPGP_SALTI  (P65418), 
MPGP_SALTY  (P65417), PNP_METPP   (A2SFM2), PNP_POLNA   (A1VM56), 
PNP_POLSJ   (Q127W8), PNP_RHOFT   (Q21YD1)
» More

PDB
[Detailed view]
2 PDB

1NRW; 1RKQ

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