Entry: PS01228

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General information about the entry

Entry name [info] COF_1
Accession [info] PS01228
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00944

Name and characterization of the entry

Description [info] Hypothetical cof family signature 1.
Pattern [info]
[LIVFYAN]-[LIVMFA]-x(2)-D-[LIVMF]-[ND]-G-T-[LIV]-[LVY]-[STANLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 96 in 96 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 11
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 82.29 %
Recall (true positives / (true positives + false negatives)) 87.78 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

COF_CITK8   (A8AK07), COF_ECO24   (A7ZIK4), COF_ECO27   (B7UJR9), 
COF_ECO45   (B7MDA5), COF_ECO55   (B7L683), COF_ECO57   (Q8XE50), 
COF_ECO5E   (B5Z3V4), COF_ECO7I   (B7NJ48), COF_ECO81   (B7MQG2), 
COF_ECO8A   (B7M3T9), COF_ECOBW   (C4ZTK3), COF_ECODH   (B1XFN4), 
COF_ECOHS   (A7ZXA4), COF_ECOK1   (A1A8B5), COF_ECOL5   (Q0TKJ5), 
COF_ECOL6   (Q8FKA2), COF_ECOLI   (P46891), COF_ECOLU   (B7N900), 
COF_ECOSE   (B6HZQ3), COF_ECOSM   (B1LJK3), COF_ECOUT   (Q1RF89), 
COF_ENT38   (A4W7B7), COF_ESCF3   (B7LMD3), COF_KLEP3   (B5Y0T3), 
COF_KLEP7   (A6T5I9), COF_SALA4   (B5EXJ7), COF_SALAR   (A9MM14), 
COF_SALCH   (Q57SA6), COF_SALDC   (B5FKW1), COF_SALEP   (B5QU47), 
COF_SALG2   (B5R6V8), COF_SALHS   (B4T9F2), COF_SALNS   (B4SWV0), 
COF_SALPA   (Q5PFM4), COF_SALPB   (A9MWC0), COF_SALPK   (B5BD74), 
COF_SALSV   (B4TMD5), COF_SALTI   (Q8Z8U7), COF_SALTY   (Q8ZRB6), 
COF_SERP5   (A8GAR8), COF_SHIB3   (B2U4Q1), COF_SHIBS   (Q325F5), 
COF_SHIF8   (Q0T7D7), COF_SHIFL   (Q83M49), COF_SHISS   (Q3Z4V2), 
COF_YERE8   (A1JNL2), COF_YERP3   (A7FLB5), COF_YERPA   (Q1C4L7), 
COF_YERPB   (B2K6W6), COF_YERPE   (Q7CK25), COF_YERPG   (A9QZP3), 
COF_YERPN   (Q1CL56), COF_YERPP   (A4TPD3), COF_YERPS   (Q66DS5), 
COF_YERPY   (B1JHR2), GPMPP_PERMH (C0QRP9), Y003_HAEIN  (P44447), 
Y028_BUCAI  (P57140), Y029_BUCAP  (Q8KA73), Y030_BUCBP  (Q89B25), 
Y125_MYCGE  (P47371), Y263_MYCGE  (P47505), Y264_MYCPN  (P75511), 
Y265_MYCGE  (P47507), Y381_MYCPN  (P75401), Y383_MYCPN  (P75399), 
Y533_STRP6  (Q5XD45), Y597_HAEIN  (P44771), Y732_MYCCT  (P53661), 
YBHA_ECOLI  (P21829), YCSE_BACSU  (P42962), YIDA_ECOL6  (P0A8Y6), 
YIDA_ECOLI  (P0A8Y5), YIDA_SHIFL  (P0A8Y7), YIGL_ECO57  (Q8X8L6), 
YIGL_ECOLI  (P27848), YUPP_MYCHO  (P43051), YWPJ_BACSU  (P94592), 
YXEH_BACSU  (P54947)
» More

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

BPPI_STRP6  (Q5XAQ1), COF_CROS8   (A7MFJ6), COF_ECOLC   (B1IZE7), 
COF_SHIDS   (Q32JB1), NTDB_BACSU  (O07565), SUPH_ECOLI  (P75792), 
Y427_MYCPN  (P75360), YBJI_ECOLI  (P75809), YITU_BACSU  (P70947), 
YKRA_BACSU  (Q45494), YWTE_BACSU  (P96741)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

YPDA_GEOSE  (P21878)

		
UniProtKB/Swiss-Prot
False positive sequences
17 sequences

GPH_HAEI8   (Q4QMY0), GPH_HAEIN   (P44755), GPH_MANSM   (Q65Q22), 
GPH_PASMU   (Q9CKJ5), GPH_THIDA   (Q3SGR5), LCAP_HUMAN  (Q9UIQ6), 
LCAP_MOUSE  (Q8C129), LCAP_RAT    (P97629), MKS3_HUMAN  (Q5HYA8), 
MPGP_SALCH  (Q57N15), MPGP_SALPA  (Q5PLI3), MPGP_SALTI  (P65418), 
MPGP_SALTY  (P65417), PNP_METPP   (A2SFM2), PNP_POLNA   (A1VM56), 
PNP_POLSJ   (Q127W8), PNP_RHOFD   (Q21YD1)
» More

PDB
[Detailed view]
2 PDB

1NRW; 1RKQ

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