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Entry: PS01228

General information about the entry

Entry name [info] COF_1
Accession [info] PS01228
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00944

Name and characterization of the entry

Description [info] Hypothetical cof family signature 1.
Pattern [info]
[LIVFYAN]-[LIVMFA]-x(2)-D-[LIVMF]-[ND]-G-T-[LIV]-[LVY]-[STANLM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 96 in 96 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits 0
Number of false positive hits 17 in 17 different sequences
Number of false negative sequences 11
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 82.29 %
Recall (true positives / (true positives + false negatives)) 87.78 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

COF_CITK8   (A8AK07    ), COF_ECO24   (A7ZIK4    ), COF_ECO27   (B7UJR9    ), 
COF_ECO45   (B7MDA5    ), COF_ECO55   (B7L683    ), COF_ECO57   (Q8XE50    ), 
COF_ECO5E   (B5Z3V4    ), COF_ECO7I   (B7NJ48    ), COF_ECO81   (B7MQG2    ), 
COF_ECO8A   (B7M3T9    ), COF_ECOBW   (C4ZTK3    ), COF_ECODH   (B1XFN4    ), 
COF_ECOHS   (A7ZXA4    ), COF_ECOK1   (A1A8B5    ), COF_ECOL5   (Q0TKJ5    ), 
COF_ECOL6   (Q8FKA2    ), COF_ECOLI   (P46891    ), COF_ECOLU   (B7N900    ), 
COF_ECOSE   (B6HZQ3    ), COF_ECOSM   (B1LJK3    ), COF_ECOUT   (Q1RF89    ), 
COF_ENT38   (A4W7B7    ), COF_ESCF3   (B7LMD3    ), COF_KLEP3   (B5Y0T3    ), 
COF_KLEP7   (A6T5I9    ), COF_SALA4   (B5EXJ7    ), COF_SALAR   (A9MM14    ), 
COF_SALCH   (Q57SA6    ), COF_SALDC   (B5FKW1    ), COF_SALEP   (B5QU47    ), 
COF_SALG2   (B5R6V8    ), COF_SALHS   (B4T9F2    ), COF_SALNS   (B4SWV0    ), 
COF_SALPA   (Q5PFM4    ), COF_SALPB   (A9MWC0    ), COF_SALPK   (B5BD74    ), 
COF_SALSV   (B4TMD5    ), COF_SALTI   (Q8Z8U7    ), COF_SALTY   (Q8ZRB6    ), 
COF_SERP5   (A8GAR8    ), COF_SHIB3   (B2U4Q1    ), COF_SHIBS   (Q325F5    ), 
COF_SHIF8   (Q0T7D7    ), COF_SHIFL   (Q83M49    ), COF_SHISS   (Q3Z4V2    ), 
COF_YERE8   (A1JNL2    ), COF_YERP3   (A7FLB5    ), COF_YERPA   (Q1C4L7    ), 
COF_YERPB   (B2K6W6    ), COF_YERPE   (Q7CK25    ), COF_YERPG   (A9QZP3    ), 
COF_YERPN   (Q1CL56    ), COF_YERPP   (A4TPD3    ), COF_YERPS   (Q66DS5    ), 
COF_YERPY   (B1JHR2    ), GPMPP_PERMH (C0QRP9    ), Y003_HAEIN  (P44447    ), 
Y028_BUCAI  (P57140    ), Y029_BUCAP  (Q8KA73    ), Y030_BUCBP  (Q89B25    ), 
Y125_MYCGE  (P47371    ), Y263_MYCGE  (P47505    ), Y264_MYCPN  (P75511    ), 
Y265_MYCGE  (P47507    ), Y381_MYCPN  (P75401    ), Y383_MYCPN  (P75399    ), 
Y533_STRP6  (Q5XD45    ), Y597_HAEIN  (P44771    ), Y732_MYCCT  (P53661    ), 
YBHA_ECOLI  (P21829    ), YCSE_BACSU  (P42962    ), YIDA_ECOL6  (P0A8Y6    ), 
YIDA_ECOLI  (P0A8Y5    ), YIDA_SHIFL  (P0A8Y7    ), YIGL_ECO57  (Q8X8L6    ), 
YIGL_ECOLI  (P27848    ), YUPP_MYCHO  (P43051    ), YWPJ_BACSU  (P94592    ), 
YXEH_BACSU  (P54947    )
» more

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

BPPI_STRP6  (Q5XAQ1    ), COF_CROS8   (A7MFJ6    ), COF_ECOLC   (B1IZE7    ), 
COF_SHIDS   (Q32JB1    ), NTDB_BACSU  (O07565    ), SUPH_ECOLI  (P75792    ), 
Y427_MYCPN  (P75360    ), YBJI_ECOLI  (P75809    ), YITU_BACSU  (P70947    ), 
YKRA_BACSU  (Q45494    ), YWTE_BACSU  (P96741    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

YPDA_GEOSE  (P21878    )

		
UniProtKB/Swiss-Prot
False positive sequences
17 sequences

GPH_HAEI8   (Q4QMY0    ), GPH_HAEIN   (P44755    ), GPH_MANSM   (Q65Q22    ), 
GPH_PASMU   (Q9CKJ5    ), GPH_THIDA   (Q3SGR5    ), LCAP_HUMAN  (Q9UIQ6    ), 
LCAP_MOUSE  (Q8C129    ), LCAP_RAT    (P97629    ), MKS3_HUMAN  (Q5HYA8    ), 
MPGP_SALCH  (Q57N15    ), MPGP_SALPA  (Q5PLI3    ), MPGP_SALTI  (P65418    ), 
MPGP_SALTY  (P65417    ), PNP_METPP   (A2SFM2    ), PNP_POLNA   (A1VM56    ), 
PNP_POLSJ   (Q127W8    ), PNP_RHOFT   (Q21YD1    )
» more

PDB
[Detailed view]
2 PDB

1NRW; 1RKQ

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