Entry: PS01237

General information about the entry
Entry name UPF0028
Accession number PS01237
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00951
Name and characterization of the entry
DescriptionUncharacterized protein family UPF0028 signature.
Pattern [GA]-[GS]-G-[GA]-A-R-G-x-[SA]-H-x-G-x(9)-[IVY]-x-[IV]-[DV]-x(2)-[GA]-G-x- S-x-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 39 hits in 39 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 39 hits in 39 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 92.86 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
NTE1_ASHGO  (Q756Z0), NTE1_ASPCL  (A1C9L6), NTE1_ASPFU  (Q4WA15), 
NTE1_CANGA  (Q6FKJ1), NTE1_COCIM  (Q1DLC7), NTE1_CRYNB  (P0CP37), 
NTE1_CRYNJ  (P0CP36), NTE1_EMENI  (Q5BAE9), NTE1_ENCCU  (Q8SVN8), 
NTE1_KLULA  (Q6CWC2), NTE1_MAGO7  (A4QVZ8), NTE1_NEOFI  (A1D9Y2), 
NTE1_NEUCR  (Q7S8J1), NTE1_USTMA  (Q4PF83), NTE1_YARLI  (Q6CF18), 
NTE1_YEAST  (Q04958), PLPL6_HUMAN (Q8IY17), PLPL6_MOUSE (Q3TRM4), 
PLPL6_PONAB (Q5RDS0), RSSA_ECOLI  (P0AFR0), RSSA_SHIFL  (P0AFR1), 
SWS_DROAN   (B3MRI9), SWS_DROER   (B3NY03), SWS_DROGR   (B4JLX2), 
SWS_DROME   (Q9U969), SWS_DROMO   (B4L535), SWS_DROPE   (B4H3U8), 
SWS_DROPS   (B5DKS8), SWS_DROSE   (B4IL64), SWS_DROVI   (B4M709), 
SWS_DROWI   (B4N1W9), SWS_DROYA   (B4Q0P3), Y1063_MYCTU (P67098), 
Y1092_MYCBO (P67099), Y2565_MYCTU (P0A642), Y2594_MYCBO (P0A643), 
YLBK_BACSU  (O34731), YOL4_CAEEL  (Q02331), YVL7_CAEEL  (Q21534)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PLPL7_HUMAN (Q6ZV29), PLPL7_MOUSE (A2AJ88), PLPL7_RAT   (Q5BK26)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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