Entry: PS01251

General information about the entry
Entry name PCNA_1
Accession number PS01251
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00265
Name and characterization of the entry
DescriptionProliferating cell nuclear antigen signature 1.
Pattern [GSTA]-[LIVMF]-x-[LIVMAS]-x-[GSAVI]-[LIVM]-[DS]-x-[NSAED]-[HKRNS]-[VIT]- x-[LMYF]-[VIGAL]-x-[LIVMF]-x-[LIVM]-x(4)-F.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 81 hits in 81 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 81 hits in 81 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 17
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.65 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
PCNA1_AERPE (Q9YFT8), PCNA1_ARATH (Q9M7Q7), PCNA1_DAUCA (Q00268), 
PCNA1_PBCV1 (Q84513), PCNA1_PYRAE (Q8ZTY0), PCNA1_PYRKO (Q5JF32), 
PCNA1_SULAC (Q4JAI6), PCNA1_SULOH (P57762), PCNA1_SULSO (P57765), 
PCNA1_SULTO (Q975N2), PCNA2_AERPE (Q9Y9V7), PCNA2_ARATH (Q9ZW35), 
PCNA2_DAUCA (Q00265), PCNA2_PBCV1 (O41056), PCNA2_PYRKO (Q5JFD3), 
PCNA2_SULAC (Q4J9A8), PCNA3_SULSO (Q97Z84), PCNA3_SULTO (Q973F5), 
PCNA_ANGJA  (Q9W644), PCNA_ARCFU  (O29912), PCNA_BOMMO  (O01377), 
PCNA_BOVIN  (Q3ZBW4), PCNA_BRANA  (Q43124), PCNA_CAEEL  (O02115), 
PCNA_CATRO  (P24314), PCNA_CHICK  (Q9DEA3), PCNA_COTJA  (Q9DDF1), 
PCNA_CRIGR  (P57761), PCNA_DANRE  (Q9PTP1), PCNA_DROME  (P17917), 
PCNA_HALMA  (Q9P9H8), PCNA_HALS3  (B0R7F7), PCNA_HALSA  (Q9HN45), 
PCNA_HAPBU  (Q6B6N4), PCNA_HUMAN  (P12004), PCNA_MACFA  (P61258), 
PCNA_MAIZE  (Q43266), PCNA_META3  (A6UUW0), PCNA_METAC  (Q8TUF7), 
PCNA_METBF  (Q46E39), PCNA_METBU  (Q12U18), PCNA_METJA  (Q57697), 
PCNA_METKA  (Q8TWK3), PCNA_METM5  (A4G0K8), PCNA_METM6  (A9A8V2), 
PCNA_METM7  (A6VHX7), PCNA_METMA  (Q8PX25), PCNA_METMP  (Q6LWJ8), 
PCNA_METS3  (A5UMB4), PCNA_METST  (Q2NE55), PCNA_METTH  (O27367), 
PCNA_METTP  (A0B7Y8), PCNA_METVS  (A6UQZ4), PCNA_MOUSE  (P17918), 
PCNA_NATPD  (Q3IU15), PCNA_NPVAC  (P11038), PCNA_NPVOP  (O10308), 
PCNA_ORYSJ  (P17070), PCNA_PEA    (O82134), PCNA_PICTO  (Q6KZF1), 
PCNA_PLAF7  (P61074), PCNA_PLAFK  (P31008), PCNA_POPNI  (Q9MAY3), 
PCNA_PYRAB  (Q9UYX8), PCNA_PYRFU  (O73947), PCNA_PYRHO  (O58398), 
PCNA_RAT    (P04961), PCNA_SARCR  (O16852), PCNA_SCHPO  (Q03392), 
PCNA_SOYBN  (P22177), PCNA_STYCL  (P53358), PCNA_THEAC  (Q9HJQ0), 
PCNA_THEFM  (Q9UWR9), PCNA_THEGJ  (C5A5N6), PCNA_THEON  (B6YVZ1), 
PCNA_THESM  (C6A1Y5), PCNA_THEVO  (Q979S2), PCNA_TOBAC  (O82797), 
PCNA_UNCMA  (Q0W2J4), PCNA_XENLA  (P18248), PCNA_YEAST  (P15873)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PCNA2_PYRAE (Q8ZYL6), PCNA2_SULOH (P57763), PCNA2_SULSO (P57766), 
PCNA2_SULTO (Q975M2), PCNA3_AERPE (Q9YEZ5), PCNA_CENSY  (A0RXH7), 
PCNA_HALLT  (B9LU30), PCNA_HALWD  (Q18E60), PCNA_METB6  (A7I849), 
PCNA_METHJ  (Q2FNX1), PCNA_METLZ  (A2SSW6), PCNA_METMJ  (A3CVJ2), 
PCNA_METPE  (B8GG80), PCNA_MIMIV  (Q7T6Y0), PCNA_NANEQ  (Q74MV1), 
PCNA_NITMS  (A9A2X4), PCNA_THEPD  (A1RXU8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AXC; 1GE8; 1ISQ; 1IZ4; 1IZ5; 1PLQ; 1PLR; 1RWZ; 1RXM; 1RXZ; 1SXJ; 1U76; 1U7B; 1UD9; 1UL1; 1VYJ; 1VYM; 1W60; 2HII; 2HIK; 2IJX; 2IO4; 2IX2; 2IZO; 2NTI; 2OD8; 2ZVK; 2ZVL; 2ZVM; 2ZVV; 2ZVW; 3AIX; 3AIZ; 3F1W; 3FDS; 3GPM; 3GPN; 3L0W; 3L0X; 3L10; 3LX1; 3LX2; 3P83; 3P87; 3PGE; 3TBL; 3V60; 3V61; 3V62; 3VKX;

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