Entry: PS01262

General information about the entry
Entry name IF1A
Accession number PS01262
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00970
Name and characterization of the entry
DescriptionEukaryotic initiation factor 1A signature.
Pattern [IMVALH]-x-G-x-[GSDENK]-[KRHFW]-x(4)-[CL]-x-D-G-x(2)-[RY]-x(2)-[RH]-[IL]- x-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 57 hits in 57 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 57 hits in 57 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 95.00 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
IF1A1_HALSA (Q9HN64), IF1A1_HALWD (Q18EX1), IF1A1_METAC (Q8TSA3), 
IF1A1_METBF (Q469J2), IF1A1_METMA (Q8PVF1), IF1A2_HALSA (Q9HP87), 
IF1A2_HALWD (Q18JF4), IF1A2_METAC (Q8TR33), IF1A2_METBF (Q469I9), 
IF1A2_METMA (Q8PUJ8), IF1A3_METAC (Q8TR31), IF1AX_HUMAN (P47813), 
IF1AX_MOUSE (Q8BMJ3), IF1AX_PONAB (Q5RA42), IF1AY_HUMAN (O14602), 
IF1AY_PANTR (Q6GVM3), IF1A_AERPE  (P57676), IF1A_ARCFU  (O29481), 
IF1A_DICDI  (Q54YJ6), IF1A_HALMA  (Q5UZM2), IF1A_HALS3  (B0R7D8), 
IF1A_META3  (A6UUK8), IF1A_METBU  (Q12YN5), IF1A_METJA  (Q57887), 
IF1A_METKA  (Q8TXZ3), IF1A_METLZ  (A2STQ8), IF1A_METM5  (A4FYM5), 
IF1A_METM6  (A9A6C2), IF1A_METM7  (A6VJQ7), IF1A_METMP  (Q6LZM1), 
IF1A_METS5  (A4YEH8), IF1A_METTH  (O27085), IF1A_MOUSE  (Q60872), 
IF1A_NATPD  (Q3IT14), IF1A_ONOVI  (P56331), IF1A_PICTO  (Q6L2G4), 
IF1A_PYRAB  (Q9V138), IF1A_PYRAE  (Q8ZXV9), IF1A_PYRFU  (Q8U0K5), 
IF1A_PYRHO  (O59280), IF1A_PYRKO  (Q5JH78), IF1A_RABIT  (P47814), 
IF1A_RAT    (Q6VV72), IF1A_SCHPO  (P55877), IF1A_SULAC  (Q4JA54), 
IF1A_SULIA  (C3N0P1), IF1A_SULIK  (C4KK84), IF1A_SULIL  (C3MK60), 
IF1A_SULIM  (C3MU29), IF1A_SULIN  (C3NMA0), IF1A_SULIY  (C3N8M9), 
IF1A_SULSO  (Q97W62), IF1A_SULTO  (Q974Z9), IF1A_THEAC  (Q03590), 
IF1A_THEVO  (Q979F7), IF1A_WHEAT  (P47815), IF1A_YEAST  (P38912)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
IF1A_DESK1  (B8D5N1), IF1A_METST  (Q2NEP1), YN98_SCHPO  (Q9Y803)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1D7Q; 1JT8;

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