Home ScanProsite ProRule Documents Downloads Links Funding
Entry: PS01282
General information about the entry
Entry nameBIR_REPEAT_1
Accession numberPS01282
Entry typePATTERN
DateNOV-1997 (CREATED); JUL-1998 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00987
Name and characterization of the entry
DescriptionBIR repeat.
Pattern[HKEPILVY]-x(2)-R-x(3,7)-[FYW]-x(11,14)-[STAN]-G-[LMF]-x-[FYHDA]-x(4)- [DESL]-x(2,3)-C-x(2)-C-x(6)-[WA]-x(9)-H-x(4)-[PRSD]-x-C-x(2)-[LIVMA].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 82 hits in 45 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 82 hits in 45 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 24
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 77.36 %
Comments
  • Taxonomic range: Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 3
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
BIR1A_MOUSE (Q9QWK5), BIR1B_MOUSE (Q9QUK4), BIR1E_MOUSE (Q9R016), 
BIR1F_MOUSE (Q9JIB6), BIR1G_MOUSE (Q9JIB3), BIR7A_XENLA (Q8JHV9), 
BIR7B_XENLA (A9ULZ2), BIRC1_HUMAN (Q13075), BIRC2_HUMAN (Q13490), 
BIRC2_MOUSE (Q62210), BIRC3_CANFA (A1E2V0), BIRC3_HUMAN (Q13489), 
BIRC3_MOUSE (O08863), BIRC7_HUMAN (Q96CA5), BIRC7_XENTR (A9JTP3), 
BIRC8_HUMAN (Q96P09), BIRC8_PANTR (Q95M72), BIR_CHICK   (Q90660), 
IAP1_DROME  (Q24306), IAP1_NPVAC  (P41435), IAP1_NPVOP  (O10296), 
IAP1_OSHVF  (Q6R7I2), IAP2_DROME  (Q24307), IAP3_NPVOP  (P41437), 
IAPL_ASFC1  (P68764), IAPL_ASFC3  (O11451), IAPL_ASFCH  (P68763), 
IAPL_ASFE1  (P69181), IAPL_ASFE7  (P69182), IAPL_ASFH8  (P69183), 
IAPL_ASFL6  (P69184), IAPL_ASFM1  (O11452), IAPL_ASFP5  (P68765), 
IAP_ASFB7   (P69180), IAP_ASFK5   (P0C9X4), IAP_ASFM2   (O11453), 
IAP_ASFP4   (P0C9X5), IAP_ASFWA   (P0C9X6), IAP_GVCPM   (P41436), 
PIAP_PIG    (O62640), XIAP_HUMAN  (P98170), XIAP_MOUSE  (Q60989), 
XIAP_RAT    (Q9R0I6), XIAP_XENLA  (A5D8Q0), XIAP_XENTR  (Q5BKL8)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BI51A_XENLA (Q8JGN5), BI51B_XENLA (Q4R1J6), BI52A_XENLA (Q50L39), 
BI52B_XENLA (Q804H7), BIR1_SCHPO  (O14064), BIR1_YEAST  (P47134), 
BIR51_XENTR (Q28H51), BIR52_XENTR (Q28ER3), BIRC5_BOVIN (Q6J1J1), 
BIRC5_CANFA (Q8I009), BIRC5_FELCA (Q6I6F4), BIRC5_HUMAN (O15392), 
BIRC5_MOUSE (O70201), BIRC5_PIG   (Q9GLN5), BIRC5_PONAB (Q5RAH9), 
BIRC5_RAT   (Q9JHY7), BIRC6_HUMAN (Q9NR09), BIRC8_GORGO (Q95M71), 
IAP2_NPVAC  (P41454), IAP2_NPVOP  (O10324), IAP2_OSHVF  (Q6R7E2), 
IAP3_OSHVF  (Q6R7D0), IAP4_OSHVF  (Q6R7C4), VF193_IIV6  (P47732)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1C9Q; 1F9X; 1G3F; 1G73; 1I3O; 1JD4; 1JD5; 1JD6; 1NW9; 1OXN; 1OXQ; 1OY7; 1Q4Q; 1QBH; 1SDZ; 1SE0; 1TFQ; 1TFT; 1TW6; 1XB0; 1XB1; 2I3H; 2I3I; 2JK7; 2OPY; 2OPZ; 2POI; 2POP; 2QRA; 2UVL; 2VM5; 2VSL; 3CLX; 3CM2; 3CM7; 3D9T; 3D9U; 3EYL; 3F7G; 3F7H; 3F7I; 3G76; 3GT9; 3GTA; 3HL5; 3M0A; 3M0D; 3M1D; 3MUP; 3OZ1; 3SIP; 3SIQ; 3T6P;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or