Entry: PS01283

General information about the entry
Entry name TBOX_1
Accession number PS01283
Entry type PATTERN
Date NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00972
Name and characterization of the entry
DescriptionT-box domain signature 1.
Pattern [LQI]-W-x(2)-[FCL]-x(3,4)-[NT]-E-[MQ]-[LIVNM]-[LIV]-[TLF]-x(2)-[GR]-[RG]- [KRQM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 92 hits in 92 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 92 hits in 92 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 89.32 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BRAC1_BRAFL (Q17134), BRAC2_BRAFL (P80492), BRACA_DANRE (Q07998), 
BRAC_CANFA  (Q9GL27), BRAC_CHICK  (P79777), BRAC_HALRO  (P56158), 
BRAC_HEMPU  (Q25113), BRAC_HUMAN  (O15178), BRAC_MOUSE  (P20293), 
BRAC_XENLA  (P24781), BRA_ASTPE   (Q9U903), BRC2_HALRO  (O01409), 
BYN_DROME   (P55965), EOMES_HUMAN (O95936), EOMES_MOUSE (O54839), 
EOMES_XENLA (P79944), H15_DROME   (Q94890), OMB_DROME   (Q24432), 
TBR1_ASTPE  (Q9NL40), TBR1_HUMAN  (Q16650), TBR1_MOUSE  (Q64336), 
TBX10_HUMAN (O75333), TBX10_MOUSE (Q810F8), TBX11_CAEEL (Q20257), 
TBX12_CAEEL (P90971), TBX15_HUMAN (Q96SF7), TBX15_MOUSE (O70306), 
TBX18_CAEEL (O02073), TBX18_HUMAN (O95935), TBX18_MOUSE (Q9EPZ6), 
TBX19_CANFA (Q5XNS0), TBX19_HUMAN (O60806), TBX19_MOUSE (Q99ME7), 
TBX1A_XENLA (Q8AX98), TBX1B_XENLA (Q32NI9), TBX1_DANRE  (Q8AXX2), 
TBX1_HUMAN  (O43435), TBX1_MOUSE  (P70323), TBX1_XENTR  (Q3SA49), 
TBX20_CHICK (Q8UW76), TBX20_DANRE (Q9I9K7), TBX20_HUMAN (Q9UMR3), 
TBX20_MOUSE (Q9ES03), TBX20_XENLA (Q8AXW8), TBX20_XENTR (Q3SA46), 
TBX21_HUMAN (Q9UL17), TBX21_MOUSE (Q9JKD8), TBX22_HUMAN (Q9Y458), 
TBX22_MOUSE (Q8K402), TBX2A_XENLA (Q9IBC8), TBX2B_XENLA (Q6PCL0), 
TBX2_CAEEL  (Q19691), TBX2_CANFA  (Q863A2), TBX2_DANRE  (Q7ZTU9), 
TBX2_HUMAN  (Q13207), TBX2_MOUSE  (Q60707), TBX2_XENTR  (Q3SA48), 
TBX33_CAEEL (O45291), TBX37_CAEEL (Q9U2C9), TBX38_CAEEL (Q9XVD5), 
TBX3_CHICK  (O73718), TBX3_HUMAN  (O15119), TBX3_MOUSE  (P70324), 
TBX3_RAT    (Q7TST9), TBX4_CANFA  (Q861Q9), TBX4_HUMAN  (P57082), 
TBX4_MOUSE  (P70325), TBX5A_DANRE (Q9IAK8), TBX5_CHICK  (Q9PWE8), 
TBX5_HUMAN  (Q99593), TBX5_MOUSE  (P70326), TBX5_RAT    (Q5I2P1), 
TBX5_XENLA  (Q9W7C2), TBX5_XENTR  (Q3SA47), TBX6L_CHICK (P79779), 
TBX6L_DANRE (P79742), TBX6_BOVIN  (E1BEA8), TBX6_DANRE  (Q8JIS6), 
TBX6_GORGO  (A1YF56), TBX6_HUMAN  (O95947), TBX6_MOUSE  (P70327), 
TBX6_RAT    (D3ZJK7), TBX6_XENLA  (Q8AV66), TBX6_XENTR  (Q66JL1), 
TBX7_CAEEL  (Q95PX3), TBX8_CAEEL  (Q22292), TBX9_CAEEL  (Q22289), 
TBXT_CHICK  (P79778), VEGTA_XENLA (P87377), VEGTB_XENLA (O13161), 
VEGT_XENBO  (Q98UD2), VEGT_XENTR  (Q28HY0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
MGAP_HUMAN  (Q8IWI9), MGAP_MOUSE  (A2AWL7), TBX30_CAEEL (Q9N2K7), 
TBX31_CAEEL (Q9TZL0), TBX32_CAEEL (O61764), TBX34_CAEEL (Q9NAH2), 
TBX35_CAEEL (Q09376), TBX36_CAEEL (Q23622), TBX39_CAEEL (Q9NA56), 
TBX40_CAEEL (Q9NA55), TBX41_CAEEL (Q22813)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1H6F; 1XBR; 2X6U; 2X6V; 4A04;

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