Entry: PS01283

General information about the entry

Entry name [info] TBOX_1
Accession [info] PS01283
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00972

Name and characterization of the entry

Description [info] T-box domain signature 1.
Pattern [info]
[LQI]-W-x(2)-[FCL]-x(3,4)-[NT]-E-[MQ]-[LIVNM]-[LIV]-[TLF]-x(2)-[GR]-[RG]-
[KRQM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_05 which contains 551'193 sequence entries.


Total number of hits 92 in 92 different sequences
Number of true positive hits 92 in 92 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.32 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
92 sequences

BRAC1_BRAFL (Q17134    ), BRAC2_BRAFL (P80492    ), BRACA_DANRE (Q07998    ), 
BRAC_CANLF  (Q9GL27    ), BRAC_CHICK  (P79777    ), BRAC_HALRO  (P56158    ), 
BRAC_HEMPU  (Q25113    ), BRAC_HUMAN  (O15178    ), BRAC_MOUSE  (P20293    ), 
BRAC_XENLA  (P24781    ), BRA_PATPE   (Q9U903    ), BRC2_HALRO  (O01409    ), 
BYN_DROME   (P55965    ), EOMES_HUMAN (O95936    ), EOMES_MOUSE (O54839    ), 
EOMES_XENLA (P79944    ), H15_DROME   (Q94890    ), OMB_DROME   (Q24432    ), 
TBR1_HUMAN  (Q16650    ), TBR1_MOUSE  (Q64336    ), TBR1_PATPE  (Q9NL40    ), 
TBX10_HUMAN (O75333    ), TBX10_MOUSE (Q810F8    ), TBX11_CAEEL (Q20257    ), 
TBX12_CAEEL (P90971    ), TBX15_HUMAN (Q96SF7    ), TBX15_MOUSE (O70306    ), 
TBX18_CAEEL (O02073    ), TBX18_HUMAN (O95935    ), TBX18_MOUSE (Q9EPZ6    ), 
TBX19_CANLF (Q5XNS0    ), TBX19_HUMAN (O60806    ), TBX19_MOUSE (Q99ME7    ), 
TBX1A_XENLA (Q8AX98    ), TBX1B_XENLA (Q32NI9    ), TBX1_DANRE  (Q8AXX2    ), 
TBX1_HUMAN  (O43435    ), TBX1_MOUSE  (P70323    ), TBX1_XENTR  (Q3SA49    ), 
TBX20_CHICK (Q8UW76    ), TBX20_DANRE (Q9I9K7    ), TBX20_HUMAN (Q9UMR3    ), 
TBX20_MOUSE (Q9ES03    ), TBX20_XENLA (Q8AXW8    ), TBX20_XENTR (Q3SA46    ), 
TBX21_HUMAN (Q9UL17    ), TBX21_MOUSE (Q9JKD8    ), TBX22_HUMAN (Q9Y458    ), 
TBX22_MOUSE (Q8K402    ), TBX2A_XENLA (Q9IBC8    ), TBX2B_XENLA (Q6PCL0    ), 
TBX2_CAEEL  (Q19691    ), TBX2_CANLF  (Q863A2    ), TBX2_DANRE  (Q7ZTU9    ), 
TBX2_HUMAN  (Q13207    ), TBX2_MOUSE  (Q60707    ), TBX2_XENTR  (Q3SA48    ), 
TBX33_CAEEL (O45291    ), TBX37_CAEEL (Q9U2C9    ), TBX38_CAEEL (Q9XVD5    ), 
TBX3_CHICK  (O73718    ), TBX3_HUMAN  (O15119    ), TBX3_MOUSE  (P70324    ), 
TBX3_RAT    (Q7TST9    ), TBX4_CANLF  (Q861Q9    ), TBX4_HUMAN  (P57082    ), 
TBX4_MOUSE  (P70325    ), TBX5A_DANRE (Q9IAK8    ), TBX5_CHICK  (Q9PWE8    ), 
TBX5_HUMAN  (Q99593    ), TBX5_MOUSE  (P70326    ), TBX5_RAT    (Q5I2P1    ), 
TBX5_XENLA  (Q9W7C2    ), TBX5_XENTR  (Q3SA47    ), TBX6L_CHICK (P79779    ), 
TBX6L_DANRE (P79742    ), TBX6_BOVIN  (E1BEA8    ), TBX6_DANRE  (Q8JIS6    ), 
TBX6_GORGO  (A1YF56    ), TBX6_HUMAN  (O95947    ), TBX6_MOUSE  (P70327    ), 
TBX6_RAT    (D3ZJK7    ), TBX6_XENLA  (Q8AV66    ), TBX6_XENTR  (Q66JL1    ), 
TBX7_CAEEL  (Q95PX3    ), TBX8_CAEEL  (Q22292    ), TBX9_CAEEL  (Q22289    ), 
TBXT_CHICK  (P79778    ), VEGTA_XENLA (P87377    ), VEGTB_XENLA (O13161    ), 
VEGT_XENBO  (Q98UD2    ), VEGT_XENTR  (Q28HY0    )
» more

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

MGAP_HUMAN  (Q8IWI9    ), MGAP_MOUSE  (A2AWL7    ), TBX30_CAEEL (Q9N2K7    ), 
TBX31_CAEEL (Q9TZL0    ), TBX32_CAEEL (O61764    ), TBX34_CAEEL (Q9NAH2    ), 
TBX35_CAEEL (Q09376    ), TBX36_CAEEL (Q23622    ), TBX39_CAEEL (Q9NA56    ), 
TBX40_CAEEL (Q9NA55    ), TBX41_CAEEL (Q22813    )
» more

PDB
[Detailed view]
8 PDB

1H6F; 1XBR; 2X6U; 2X6V; 4A04; 4S0H; 5BQD; 5FLV

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