Entry: PS01283

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General information about the entry

Entry name [info] TBOX_1
Accession [info] PS01283
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00972

Name and characterization of the entry

Description [info] T-box domain signature 1.
Pattern [info]
[LQI]-W-x(2)-[FCL]-x(3,4)-[NT]-E-[MQ]-[LIVNM]-[LIV]-[TLF]-x(2)-[GR]-[RG]-
[KRQM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 92 in 92 different sequences
Number of true positive hits 92 in 92 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.32 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
92 sequences

BRAC1_BRAFL (Q17134), BRAC2_BRAFL (P80492), BRACA_DANRE (Q07998), 
BRAC_CANFA  (Q9GL27), BRAC_CHICK  (P79777), BRAC_HALRO  (P56158), 
BRAC_HEMPU  (Q25113), BRAC_HUMAN  (O15178), BRAC_MOUSE  (P20293), 
BRAC_XENLA  (P24781), BRA_PATPE   (Q9U903), BRC2_HALRO  (O01409), 
BYN_DROME   (P55965), EOMES_HUMAN (O95936), EOMES_MOUSE (O54839), 
EOMES_XENLA (P79944), H15_DROME   (Q94890), OMB_DROME   (Q24432), 
TBR1_HUMAN  (Q16650), TBR1_MOUSE  (Q64336), TBR1_PATPE  (Q9NL40), 
TBX10_HUMAN (O75333), TBX10_MOUSE (Q810F8), TBX11_CAEEL (Q20257), 
TBX12_CAEEL (P90971), TBX15_HUMAN (Q96SF7), TBX15_MOUSE (O70306), 
TBX18_CAEEL (O02073), TBX18_HUMAN (O95935), TBX18_MOUSE (Q9EPZ6), 
TBX19_CANFA (Q5XNS0), TBX19_HUMAN (O60806), TBX19_MOUSE (Q99ME7), 
TBX1A_XENLA (Q8AX98), TBX1B_XENLA (Q32NI9), TBX1_DANRE  (Q8AXX2), 
TBX1_HUMAN  (O43435), TBX1_MOUSE  (P70323), TBX1_XENTR  (Q3SA49), 
TBX20_CHICK (Q8UW76), TBX20_DANRE (Q9I9K7), TBX20_HUMAN (Q9UMR3), 
TBX20_MOUSE (Q9ES03), TBX20_XENLA (Q8AXW8), TBX20_XENTR (Q3SA46), 
TBX21_HUMAN (Q9UL17), TBX21_MOUSE (Q9JKD8), TBX22_HUMAN (Q9Y458), 
TBX22_MOUSE (Q8K402), TBX2A_XENLA (Q9IBC8), TBX2B_XENLA (Q6PCL0), 
TBX2_CAEEL  (Q19691), TBX2_CANFA  (Q863A2), TBX2_DANRE  (Q7ZTU9), 
TBX2_HUMAN  (Q13207), TBX2_MOUSE  (Q60707), TBX2_XENTR  (Q3SA48), 
TBX33_CAEEL (O45291), TBX37_CAEEL (Q9U2C9), TBX38_CAEEL (Q9XVD5), 
TBX3_CHICK  (O73718), TBX3_HUMAN  (O15119), TBX3_MOUSE  (P70324), 
TBX3_RAT    (Q7TST9), TBX4_CANFA  (Q861Q9), TBX4_HUMAN  (P57082), 
TBX4_MOUSE  (P70325), TBX5A_DANRE (Q9IAK8), TBX5_CHICK  (Q9PWE8), 
TBX5_HUMAN  (Q99593), TBX5_MOUSE  (P70326), TBX5_RAT    (Q5I2P1), 
TBX5_XENLA  (Q9W7C2), TBX5_XENTR  (Q3SA47), TBX6L_CHICK (P79779), 
TBX6L_DANRE (P79742), TBX6_BOVIN  (E1BEA8), TBX6_DANRE  (Q8JIS6), 
TBX6_GORGO  (A1YF56), TBX6_HUMAN  (O95947), TBX6_MOUSE  (P70327), 
TBX6_RAT    (D3ZJK7), TBX6_XENLA  (Q8AV66), TBX6_XENTR  (Q66JL1), 
TBX7_CAEEL  (Q95PX3), TBX8_CAEEL  (Q22292), TBX9_CAEEL  (Q22289), 
TBXT_CHICK  (P79778), VEGTA_XENLA (P87377), VEGTB_XENLA (O13161), 
VEGT_XENBO  (Q98UD2), VEGT_XENTR  (Q28HY0)
» More

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

MGAP_HUMAN  (Q8IWI9), MGAP_MOUSE  (A2AWL7), TBX30_CAEEL (Q9N2K7), 
TBX31_CAEEL (Q9TZL0), TBX32_CAEEL (O61764), TBX34_CAEEL (Q9NAH2), 
TBX35_CAEEL (Q09376), TBX36_CAEEL (Q23622), TBX39_CAEEL (Q9NA56), 
TBX40_CAEEL (Q9NA55), TBX41_CAEEL (Q22813)
» More

PDB
[Detailed view]
5 PDB

1H6F; 1XBR; 2X6U; 2X6V; 4A04

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