Entry: PS01287

General information about the entry

Entry name [info] RTC
Accession [info] PS01287
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00989

Name and characterization of the entry

Description [info] RNA 3'-terminal phosphate cyclase signature.
Pattern [info]
[RH]-G-x(2)-P-x-G(3)-x-[LIV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 85 in 85 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 16
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.65 %
Recall (true positives / (true positives + false negatives)) 83.84 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

RCL1_ARATH  (Q9C578    ), RCL1_BOVIN  (Q2KHX8    ), RCL1_CAEEL  (Q23400    ), 
RCL1_DICDI  (Q54S38    ), RCL1_DROME  (P56175    ), RCL1_HUMAN  (Q9Y2P8    ), 
RCL1_MOUSE  (Q9JJT0    ), RCL1_SCHPO  (Q09870    ), RCL1_YEAST  (Q08096    ), 
RTCA_AERPE  (Q9YES0    ), RTCA_AQUAE  (O66884    ), RTCA_ARCFU  (O28837    ), 
RTCA_BOVIN  (Q2HJ88    ), RTCA_CALMQ  (A8MAV7    ), RTCA_DESK1  (B8D680    ), 
RTCA_DICDI  (O15746    ), RTCA_ECO24  (A7ZSU9    ), RTCA_ECO27  (B7UKC4    ), 
RTCA_ECO45  (B7MDP5    ), RTCA_ECO55  (B7L4U9    ), RTCA_ECO57  (P58127    ), 
RTCA_ECO5E  (B5YTX2    ), RTCA_ECO7I  (B7NMI4    ), RTCA_ECO81  (B7N1J7    ), 
RTCA_ECO8A  (B7M2I0    ), RTCA_ECOBW  (C4ZVX1    ), RTCA_ECODH  (B1X765    ), 
RTCA_ECOHS  (A8A5M8    ), RTCA_ECOK1  (A1AGU3    ), RTCA_ECOL5  (Q0TC48    ), 
RTCA_ECOL6  (Q8FCS8    ), RTCA_ECOLC  (B1IP46    ), RTCA_ECOLI  (P46849    ), 
RTCA_ECOLU  (B7NE24    ), RTCA_ECOSM  (B1LI80    ), RTCA_ECOUT  (Q1R5L5    ), 
RTCA_ESCF3  (B7LSC2    ), RTCA_HUMAN  (O00442    ), RTCA_HYPBU  (A2BN21    ), 
RTCA_IGNH4  (A8A9W2    ), RTCA_KORCO  (B1L6E9    ), RTCA_MACFA  (Q4R3J0    ), 
RTCA_METAC  (Q8TH85    ), RTCA_METBF  (Q46DV9    ), RTCA_METBU  (Q12V70    ), 
RTCA_METJA  (Q60335    ), RTCA_METKA  (Q8TZC9    ), RTCA_METMA  (Q8PXC4    ), 
RTCA_METS5  (A4YEC3    ), RTCA_METTH  (O27937    ), RTCA_METTP  (A0B532    ), 
RTCA_MOUSE  (Q9D7H3    ), RTCA_NITMU  (Q2Y720    ), RTCA_PONAB  (Q5R7P3    ), 
RTCA_PSEA8  (B7V0C8    ), RTCA_PSEAB  (Q02G92    ), RTCA_PSEAE  (Q9HVJ9    ), 
RTCA_PSEF5  (Q4KEB8    ), RTCA_PSEMY  (A4XRJ0    ), RTCA_PYRAB  (Q9V0Z6    ), 
RTCA_PYRCJ  (A3MXQ7    ), RTCA_PYRFU  (Q8U0N7    ), RTCA_PYRHO  (O59198    ), 
RTCA_PYRIL  (A1RSJ7    ), RTCA_RALSO  (Q8Y2V6    ), RTCA_SHIB3  (B2U3M8    ), 
RTCA_SHIBS  (Q31VL3    ), RTCA_SHIDS  (Q32AN4    ), RTCA_SHISS  (Q3YWK6    ), 
RTCA_STAMF  (A3DN24    ), RTCA_SULAC  (Q4JB78    ), RTCA_SULIA  (C3N179    ), 
RTCA_SULIK  (C4KKE6    ), RTCA_SULIL  (C3MKC1    ), RTCA_SULIM  (C3MU91    ), 
RTCA_SULIN  (C3NMT8    ), RTCA_SULIY  (C3N969    ), RTCA_SULSO  (Q97W04    ), 
RTCA_SULTO  (Q974U1    ), RTCA_THEGJ  (C5A2A3    ), RTCA_THEKO  (Q5JIQ0    ), 
RTCA_THEON  (B6YSJ5    ), RTCA_THESM  (C6A4N4    )
» more

UniProtKB/Swiss-Prot
False negative sequences
16 sequences

RTCA_ANAVT  (Q3M6L1    ), RTCA_CYAP7  (B7KCF3    ), RTCA_HALS3  (B0R414    ), 
RTCA_HALSA  (Q9HRE8    ), RTCA_KORVE  (Q1IS76    ), RTCA_METCA  (Q609M1    ), 
RTCA_NOSP7  (B2IWJ8    ), RTCA_NOSS1  (Q8YVS3    ), RTCA_PYRAE  (Q8ZST4    ), 
RTCA_PYRNV  (B1YDJ1    ), RTCA_SALA4  (B5F8N4    ), RTCA_SALEP  (B5R378    ), 
RTCA_SALG2  (B5R7J6    ), RTCA_SALHS  (B4TKU5    ), RTCA_SALPC  (C0Q0J3    ), 
RTCA_SALTY  (Q8ZLI0    )
» more

UniProtKB/Swiss-Prot
False positive sequences
2 sequences

BCL7C_HUMAN (Q8WUZ0    ), BCL7C_MOUSE (O08664    )

		
PDB
[Detailed view]
10 PDB

1QMH; 1QMI; 3KGD; 3TUT; 3TUX; 3TV1; 3TW3; 4CLQ; 4O89; 4O8J

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