Entry: PS01287

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General information about the entry

Entry name [info] RTC
Accession [info] PS01287
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00989

Name and characterization of the entry

Description [info] RNA 3'-terminal phosphate cyclase signature.
Pattern [info]
[RH]-G-x(2)-P-x-G(3)-x-[LIV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 85 in 85 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits
Number of false positive hits 2 in 2 different sequences
Number of false negative sequences 16
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 97.65 %
Recall (true positives / (true positives + false negatives)) 83.84 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

RCL1_ARATH  (Q9C578), RCL1_BOVIN  (Q2KHX8), RCL1_CAEEL  (Q23400), 
RCL1_DICDI  (Q54S38), RCL1_DROME  (P56175), RCL1_HUMAN  (Q9Y2P8), 
RCL1_MOUSE  (Q9JJT0), RCL1_SCHPO  (Q09870), RCL1_YEAST  (Q08096), 
RTCA_AERPE  (Q9YES0), RTCA_AQUAE  (O66884), RTCA_ARCFU  (O28837), 
RTCA_BOVIN  (Q2HJ88), RTCA_CALMQ  (A8MAV7), RTCA_DESK1  (B8D680), 
RTCA_DICDI  (O15746), RTCA_ECO24  (A7ZSU9), RTCA_ECO27  (B7UKC4), 
RTCA_ECO45  (B7MDP5), RTCA_ECO55  (B7L4U9), RTCA_ECO57  (P58127), 
RTCA_ECO5E  (B5YTX2), RTCA_ECO7I  (B7NMI4), RTCA_ECO81  (B7N1J7), 
RTCA_ECO8A  (B7M2I0), RTCA_ECOBW  (C4ZVX1), RTCA_ECODH  (B1X765), 
RTCA_ECOHS  (A8A5M8), RTCA_ECOK1  (A1AGU3), RTCA_ECOL5  (Q0TC48), 
RTCA_ECOL6  (Q8FCS8), RTCA_ECOLC  (B1IP46), RTCA_ECOLI  (P46849), 
RTCA_ECOLU  (B7NE24), RTCA_ECOSM  (B1LI80), RTCA_ECOUT  (Q1R5L5), 
RTCA_ESCF3  (B7LSC2), RTCA_HUMAN  (O00442), RTCA_HYPBU  (A2BN21), 
RTCA_IGNH4  (A8A9W2), RTCA_KORCO  (B1L6E9), RTCA_MACFA  (Q4R3J0), 
RTCA_METAC  (Q8TH85), RTCA_METBF  (Q46DV9), RTCA_METBU  (Q12V70), 
RTCA_METJA  (Q60335), RTCA_METKA  (Q8TZC9), RTCA_METMA  (Q8PXC4), 
RTCA_METS5  (A4YEC3), RTCA_METTH  (O27937), RTCA_METTP  (A0B532), 
RTCA_MOUSE  (Q9D7H3), RTCA_NITMU  (Q2Y720), RTCA_PONAB  (Q5R7P3), 
RTCA_PSEA8  (B7V0C8), RTCA_PSEAB  (Q02G92), RTCA_PSEAE  (Q9HVJ9), 
RTCA_PSEF5  (Q4KEB8), RTCA_PSEMY  (A4XRJ0), RTCA_PYRAB  (Q9V0Z6), 
RTCA_PYRCJ  (A3MXQ7), RTCA_PYRFU  (Q8U0N7), RTCA_PYRHO  (O59198), 
RTCA_PYRIL  (A1RSJ7), RTCA_RALSO  (Q8Y2V6), RTCA_SHIB3  (B2U3M8), 
RTCA_SHIBS  (Q31VL3), RTCA_SHIDS  (Q32AN4), RTCA_SHISS  (Q3YWK6), 
RTCA_STAMF  (A3DN24), RTCA_SULAC  (Q4JB78), RTCA_SULIA  (C3N179), 
RTCA_SULIK  (C4KKE6), RTCA_SULIL  (C3MKC1), RTCA_SULIM  (C3MU91), 
RTCA_SULIN  (C3NMT8), RTCA_SULIY  (C3N969), RTCA_SULSO  (Q97W04), 
RTCA_SULTO  (Q974U1), RTCA_THEGJ  (C5A2A3), RTCA_THEKO  (Q5JIQ0), 
RTCA_THEON  (B6YSJ5), RTCA_THESM  (C6A4N4)
» More

UniProtKB/Swiss-Prot
False negative sequences
16 sequences

RTCA_ANAVT  (Q3M6L1), RTCA_CYAP7  (B7KCF3), RTCA_HALS3  (B0R414), 
RTCA_HALSA  (Q9HRE8), RTCA_KORVE  (Q1IS76), RTCA_METCA  (Q609M1), 
RTCA_NOSP7  (B2IWJ8), RTCA_NOSS1  (Q8YVS3), RTCA_PYRAE  (Q8ZST4), 
RTCA_PYRNV  (B1YDJ1), RTCA_SALA4  (B5F8N4), RTCA_SALEP  (B5R378), 
RTCA_SALG2  (B5R7J6), RTCA_SALHS  (B4TKU5), RTCA_SALPC  (C0Q0J3), 
RTCA_SALTY  (Q8ZLI0)
» More

UniProtKB/Swiss-Prot
False positive sequences
2 sequences

BCL7C_HUMAN (Q8WUZ0), BCL7C_MOUSE (O08664)

		
PDB
[Detailed view]
7 PDB

1QMH; 1QMI; 3KGD; 3TUT; 3TUX; 3TV1; 3TW3

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