Entry: PS01288

General information about the entry
Entry name UPF0027
Accession number PS01288
Entry type PATTERN
Date NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00990
Name and characterization of the entry
DescriptionUncharacterized protein family UPF0027 signature.
Pattern Q-[LIVM]-x-N-x-A-x-[LIVM]-P-x-I-x(6)-[LIVM]-P-D-x-H-x-G-x-G-x(2)-[IV]-G.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 33 hits in 33 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 33 hits in 33 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 75.00 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RTCB1_CULQU (B0WCT9), RTCB2_CULQU (B0XKF3), RTCB_AEDAE  (Q17FP1), 
RTCB_ANOGA  (Q7Q412), RTCB_BOVIN  (Q5E9T9), RTCB_BRAFL  (C3YN79), 
RTCB_BRUMA  (A8QC60), RTCB_CAEEL  (P90838), RTCB_CHLRE  (A8JC00), 
RTCB_DANRE  (Q6NZS4), RTCB_DICDI  (Q54Y09), RTCB_DROME  (Q9VIW7), 
RTCB_ECOLI  (P46850), RTCB_HUMAN  (Q9Y3I0), RTCB_MACFA  (Q4R6X4), 
RTCB_METJA  (Q58095), RTCB_METKA  (Q8TUS2), RTCB_METMP  (Q6LXF9), 
RTCB_METTH  (O27634), RTCB_MICPC  (C1MI97), RTCB_MICSR  (C1E9Y5), 
RTCB_MONBE  (A9UXG6), RTCB_MOUSE  (Q99LF4), RTCB_MYCBO  (P59975), 
RTCB_MYCTU  (P71930), RTCB_NEMVE  (A7RKF6), RTCB_PAPAN  (A9CB42), 
RTCB_PIG    (Q19PY3), RTCB_RAT    (Q6AYT3), RTCB_THEAN  (Q4U923), 
RTCB_THEPA  (Q4N1R8), RTCB_TRIAD  (B3RID0), RTCB_XENTR  (Q561P3)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RTCB1_ENTDS (B0EAV2), RTCB1_ENTHI (C4M244), RTCB2_ENTDS (B0EIW5), 
RTCB2_ENTHI (C4M6T2), RTCB_OSTLU  (A4S3S3), RTCB_OSTTA  (Q00ZY2), 
RTCB_PLABA  (Q4YUZ9), RTCB_PLAF7  (Q8IIU6), RTCB_PLAKH  (B3L4K9), 
RTCB_PLAYO  (Q7RI54), RTCB_THAPS  (B8LBM8)
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