Entry: PS01288

Forthcoming changes to the profile format
General information about the entry

Entry name [info] UPF0027
Accession [info] PS01288
Entry type [info] PATTERN
Date [info] NOV-1997 (CREATED); NOV-1997 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00990

Name and characterization of the entry

Description [info] Uncharacterized protein family UPF0027 signature.
Pattern [info]
Q-[LIVM]-x-N-x-A-x-[LIVM]-P-x-I-x(6)-[LIVM]-P-D-x-H-x-G-x-G-x(2)-[IV]-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 34 in 34 different sequences
Number of true positive hits 34 in 34 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 11
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 75.56 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
34 sequences

RTCB1_CULQU (B0WCT9), RTCB2_CULQU (B0XKF3), RTCB_AEDAE  (Q17FP1), 
RTCB_ANOGA  (Q7Q412), RTCB_BOVIN  (Q5E9T9), RTCB_BRAFL  (C3YN79), 
RTCB_BRUMA  (A8QC60), RTCB_CAEEL  (P90838), RTCB_CHLRE  (A8JC00), 
RTCB_DANRE  (Q6NZS4), RTCB_DICDI  (Q54Y09), RTCB_DROME  (Q9VIW7), 
RTCB_ECOLI  (P46850), RTCB_HUMAN  (Q9Y3I0), RTCB_MACFA  (Q4R6X4), 
RTCB_METJA  (Q58095), RTCB_METKA  (Q8TUS2), RTCB_METMP  (Q6LXF9), 
RTCB_METTH  (O27634), RTCB_MICPC  (C1MI97), RTCB_MICSR  (C1E9Y5), 
RTCB_MONBE  (A9UXG6), RTCB_MOUSE  (Q99LF4), RTCB_MYCBO  (P59975), 
RTCB_MYCTO  (P9WGW4), RTCB_MYCTU  (P9WGW5), RTCB_NEMVE  (A7RKF6), 
RTCB_PAPAN  (A9CB42), RTCB_PIG    (Q19PY3), RTCB_RAT    (Q6AYT3), 
RTCB_THEAN  (Q4U923), RTCB_THEPA  (Q4N1R8), RTCB_TRIAD  (B3RID0), 
RTCB_XENTR  (Q561P3)
» More

UniProtKB/Swiss-Prot
False negative sequences
11 sequences

RTCB1_ENTDS (B0EAV2), RTCB1_ENTHI (C4M244), RTCB2_ENTDS (B0EIW5), 
RTCB2_ENTHI (C4M6T2), RTCB_OSTLU  (A4S3S3), RTCB_OSTTA  (Q00ZY2), 
RTCB_PLABA  (Q4YUZ9), RTCB_PLAF7  (Q8IIU6), RTCB_PLAKH  (B3L4K9), 
RTCB_PLAYO  (Q7RI54), RTCB_THAPS  (B8LBM8)
» More


View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission