Entry: PS01330

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General information about the entry

Entry name [info] PABS_1
Accession [info] PS01330
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); APR-2006 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC01033

Name and characterization of the entry

Description [info] Polyamine biosynthesis (PABS) domain signature.
Pattern [info]
[VAI]-[LAV]-[LIV](2)-G-G-G-x-[GC]-x(2)-[LIVA]-x-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 200 in 200 different sequences
Number of true positive hits 200 in 200 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 83.33 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
200 sequences

PMT1_TOBAC  (Q42963), PMT2_TOBAC  (Q9SEH7), PMT3_TOBAC  (Q9SEH5), 
PMT4_TOBAC  (Q9SEH4), SPD1_ARATH  (Q9ZUB3), SPD1_DATST  (Q96556), 
SPD1_HYONI  (O48658), SPD1_ORYSJ  (Q9SMB1), SPD1_PEA    (Q9ZTR1), 
SPD2_ARATH  (O48661), SPD2_DATST  (Q96557), SPD2_HYONI  (O48659), 
SPD2_PEA    (Q9ZTR0), SPDE_COFAR  (O82147), SPDE_NICSY  (O48660), 
SPDE_SOLLC  (Q9ZS45), SPEE1_AQUAE (O66473), SPEE1_BACAN (Q81JT0), 
SPEE1_BACCR (Q814Q1), SPEE1_LEPIN (Q8EZP1), SPEE1_PSEAE (Q9X6R0), 
SPEE1_THETN (Q8RA94), SPEE2_AQUAE (O67365), SPEE2_BACAN (Q81X05), 
SPEE2_BACCR (Q815E8), SPEE2_LEPIN (Q8EXA3), SPEE2_PSEAE (Q9HV34), 
SPEE2_STRCO (Q9X8S2), SPEE_AERPE  (Q9YE02), SPEE_ALKEH  (Q0ACK7), 
SPEE_ALKMQ  (A6TRI3), SPEE_ARCFU  (O27950), SPEE_BACC1  (Q72X78), 
SPEE_BACCN  (A7GVB2), SPEE_BACHD  (Q9K6B8), SPEE_BACSK  (Q5WB31), 
SPEE_BACSU  (P70998), SPEE_BACWK  (A9VSG3), SPEE_BUCA5  (B8D908), 
SPEE_BUCAI  (P57305), SPEE_BUCAP  (Q8K9T5), SPEE_BUCAT  (B8D7B3), 
SPEE_CALBD  (B9MRW0), SPEE_CALS8  (A4XKM9), SPEE_CITK8  (A8ALG8), 
SPEE_CLOK1  (B9E5S1), SPEE_CLOK5  (A5N219), SPEE_CLOTE  (Q891W4), 
SPEE_CLOTH  (A3DDA0), SPEE_COREF  (Q8FMF7), SPEE_DESAP  (B1I5Z0), 
SPEE_DICDI  (Q9XY92), SPEE_ECO24  (A7ZHL0), SPEE_ECO27  (B7UIG9), 
SPEE_ECO45  (B7MBA4), SPEE_ECO55  (B7LFY8), SPEE_ECO57  (P66834), 
SPEE_ECO5E  (B5YZF6), SPEE_ECO7I  (B7NI81), SPEE_ECO81  (B7MNY3), 
SPEE_ECO8A  (B7M162), SPEE_ECOBW  (C4ZRL4), SPEE_ECODH  (B1XC96), 
SPEE_ECOHS  (A7ZW70), SPEE_ECOK1  (A1A7G7), SPEE_ECOL5  (Q0TLL3), 
SPEE_ECOL6  (P66833), SPEE_ECOLC  (B1IQL9), SPEE_ECOLI  (P09158), 
SPEE_ECOLU  (B7N7Z1), SPEE_ECOSE  (B6HZ96), SPEE_ECOSM  (B1LGS2), 
SPEE_ECOUT  (Q1RG70), SPEE_ENT38  (A4W6M6), SPEE_ERWT9  (B2VD21), 
SPEE_ESCF3  (B7LVY5), SPEE_EUBR3  (C4ZDU4), SPEE_HALHL  (A1WZR2), 
SPEE_HAMD5  (C4K3X3), SPEE_HUMAN  (P19623), SPEE_HYDS0  (B4U8W2), 
SPEE_KLEP3  (B5Y1R1), SPEE_KLEP7  (A6T4R6), SPEE_KORCO  (B1L5H2), 
SPEE_LEPBA  (B0SI93), SPEE_LEPBP  (B0STV8), SPEE_LEPIC  (Q72V65), 
SPEE_METJA  (Q57761), SPEE_MOOTA  (Q2RHH3), SPEE_MOUSE  (Q64674), 
SPEE_MYCBO  (Q7TY95), SPEE_MYCTO  (P9WGE4), SPEE_MYCTU  (P9WGE5), 
SPEE_NEUCR  (Q9Y8H7), SPEE_NITOC  (Q3JDL8), SPEE_OCEIH  (Q8CV14), 
SPEE_PECAS  (Q6D1W4), SPEE_PECCP  (C6DC58), SPEE_PEPD6  (Q18A85), 
SPEE_PHOLL  (Q7N892), SPEE_PROM0  (A3PFH4), SPEE_PROM1  (A2C5F4), 
SPEE_PROM2  (A8G7J0), SPEE_PROM3  (A2CDX0), SPEE_PROM5  (A2BZ72), 
SPEE_PROM9  (Q317V6), SPEE_PROMA  (Q7V9I5), SPEE_PROMM  (Q7V3X3), 
SPEE_PROMP  (Q7UZI0), SPEE_PROMS  (A2BTR7), SPEE_PROMT  (Q46IA2), 
SPEE_PSESM  (Q884N3), SPEE_PYRAB  (Q9V277), SPEE_PYRAE  (Q8ZXM4), 
SPEE_PYRAR  (A4WHN0), SPEE_PYRCJ  (A3MU81), SPEE_PYRFU  (Q8U4G1), 
SPEE_PYRHO  (O57950), SPEE_PYRIL  (A1RU43), SPEE_PYRNV  (B1YB61), 
SPEE_RHOBA  (Q7UWD1), SPEE_RUEST  (Q1GGU4), SPEE_SALA4  (B5F815), 
SPEE_SALAR  (A9MPN3), SPEE_SALCH  (Q57T89), SPEE_SALDC  (B5FIB4), 
SPEE_SALEP  (B5R2R5), SPEE_SALG2  (B5RHA5), SPEE_SALHS  (B4TJD2), 
SPEE_SALNS  (B4SU91), SPEE_SALPA  (Q5PDA0), SPEE_SALPB  (A9MZR2), 
SPEE_SALPC  (C0Q5M7), SPEE_SALPK  (B5BL97), SPEE_SALSV  (B4TXL7), 
SPEE_SALTI  (Q8Z9E2), SPEE_SALTY  (Q8ZRS3), SPEE_SCHPO  (Q09741), 
SPEE_SERP5  (A8GJ06), SPEE_SHIB3  (B2U2X0), SPEE_SHIBS  (Q326B5), 
SPEE_SHIDS  (Q32K90), SPEE_SHIF8  (Q0T879), SPEE_SHIFL  (Q83MF0), 
SPEE_SHISS  (Q3Z5N9), SPEE_SODGM  (Q2NVS1), SPEE_STRAW  (Q82EU4), 
SPEE_STRM5  (B4SM23), SPEE_STRMK  (B2FKR1), SPEE_SULAC  (Q4JAZ8), 
SPEE_SULIA  (C3N5P4), SPEE_SULIK  (C4KHC0), SPEE_SULIL  (C3MQ26), 
SPEE_SULIM  (C3MVE5), SPEE_SULIN  (C3NHE1), SPEE_SULIY  (C3NEA8), 
SPEE_SULSO  (Q9UXE4), SPEE_SULTO  (Q975S5), SPEE_SYNE7  (Q31QK9), 
SPEE_SYNP6  (Q5N3N4), SPEE_SYNPX  (Q7U3L0), SPEE_SYNS3  (Q0I685), 
SPEE_THEKO  (Q5JFG9), SPEE_THEMA  (Q9WZC2), SPEE_THENN  (B9KAY3), 
SPEE_THEON  (B6YXJ9), SPEE_THEP1  (A5IJD3), SPEE_THEP3  (B0K9I5), 
SPEE_THEPX  (B0K172), SPEE_THET2  (Q72K55), SPEE_THET8  (Q5SK28), 
SPEE_THISH  (B8GQ45), SPEE_XANAC  (Q8PFQ4), SPEE_XANC5  (Q3BN93), 
SPEE_XANC8  (Q4UPN0), SPEE_XANCB  (B0RXN7), SPEE_XANCP  (Q8P447), 
SPEE_XANOM  (Q2P928), SPEE_XANOP  (B2SHF6), SPEE_XANOR  (Q5H6E7), 
SPEE_XYLF2  (B2I6M0), SPEE_XYLFA  (Q9PH03), SPEE_XYLFM  (B0U1H5), 
SPEE_XYLFT  (Q87F26), SPEE_YEAST  (Q12074), SPEE_YERE8  (A1JJM8), 
SPEE_YERP3  (A7FM33), SPEE_YERPA  (Q1C3U7), SPEE_YERPB  (B2K4I2), 
SPEE_YERPE  (Q8ZBJ8), SPEE_YERPG  (A9R1H4), SPEE_YERPN  (Q1CLX1), 
SPEE_YERPP  (A4TPU4), SPEE_YERPS  (Q66EH3), SPEE_YERPY  (B1JK45), 
SPSY_ARATH  (Q94BN2), SPSY_BOVIN  (Q3SZA5), SPSY_HUMAN  (P52788), 
SPSY_MOUSE  (P97355), SPSY_YEAST  (Q12455)
» More

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

ACL5_ARATH  (Q9S7X6), SPEE1_RALSO (Q8XQC8), SPEE1_STRCO (Q9L091), 
SPEE2_RALSO (Q8XQC5), SPEE2_THETN (Q8R977), SPEE_ALKOO  (A8MLM9), 
SPEE_BIFLO  (Q8G4L4), SPEE_CHRVO  (Q7NQK7), SPEE_CLOAB  (Q97FX3), 
SPEE_CLOB8  (A6M1N9), SPEE_CLOBA  (B2V328), SPEE_CLOBB  (B2TMY2), 
SPEE_CLOP1  (Q0TTQ7), SPEE_CLOPE  (Q8XMY8), SPEE_CLOPH  (A9KQ99), 
SPEE_CLOPS  (Q0SVK7), SPEE_EUBE2  (C4Z1Q7), SPEE_HELAH  (Q17WL9), 
SPEE_HELP2  (B6JM63), SPEE_HELPG  (B5Z7J7), SPEE_HELPH  (Q1CT37), 
SPEE_HELPJ  (Q9ZL11), SPEE_HELPS  (B2USZ6), SPEE_HELPY  (O25503), 
SPEE_METCA  (Q606H1), SPEE_NEIMA  (P60593), SPEE_NEIMB  (P60594), 
SPEE_NITEU  (Q82XD4), SPEE_PICTO  (Q6L1F4), SPEE_SHEON  (Q8EAX8), 
SPEE_STRPN  (P66835), SPEE_STRR6  (P66836), SPEE_STRU0  (B9DUY3), 
SPEE_SYNJA  (Q2JQS1), SPEE_SYNJB  (Q2JQ57), SPEE_THEAC  (Q9HL75), 
SPEE_THEVO  (Q97BN7), SPEE_VIBVU  (Q8D3Q3), SPEE_VIBVY  (Q7MF74), 
SPEE_WOLSU  (Q7M7Q6)
» More

PDB
[Detailed view]
18 PDB

1INL; 1IY9; 1JQ3; 1MJF; 1UIR; 1XJ5; 2E5W; 2O05; 2O06; 2O07; 2O0L; 2Q41; 2ZSU; 3ANX; 3C6K; 3C6M; 3O4F; 3RW9
» More

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