Entry: PS01330

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General information about the entry

Entry name [info] PABS_1
Accession [info] PS01330
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); APR-2006 (DATA UPDATE); DEC-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC01033

Name and characterization of the entry

Description [info] Polyamine biosynthesis (PABS) domain signature.
Pattern [info]
[VAI]-[LAV]-[LIV](2)-G-G-G-x-[GC]-x(2)-[LIVA]-x-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_02 which contains 547'599 sequence entries.


Total number of hits 202 in 202 different sequences
Number of true positive hits 202 in 202 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 83.47 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
202 sequences

PMT1_TOBAC  (Q42963), PMT2_TOBAC  (Q9SEH7), PMT3_TOBAC  (Q9SEH5), 
PMT4_TOBAC  (Q9SEH4), SPD1_ARATH  (Q9ZUB3), SPD1_DATST  (Q96556), 
SPD1_HYONI  (O48658), SPD1_ORYSJ  (Q9SMB1), SPD1_PEA    (Q9ZTR1), 
SPD2_ARATH  (O48661), SPD2_DATST  (Q96557), SPD2_HYONI  (O48659), 
SPD2_PEA    (Q9ZTR0), SPDE_COFAR  (O82147), SPDE_NICSY  (O48660), 
SPDE_SOLLC  (Q9ZS45), SPEE1_AQUAE (O66473), SPEE1_BACAN (Q81JT0), 
SPEE1_BACCR (Q814Q1), SPEE1_CALS4 (Q8RA94), SPEE1_HYPBU (A2BIX4), 
SPEE1_LEPIN (Q8EZP1), SPEE1_PSEAE (Q9X6R0), SPEE2_AQUAE (O67365), 
SPEE2_BACAN (Q81X05), SPEE2_BACCR (Q815E8), SPEE2_HYPBU (A2BJU2), 
SPEE2_LEPIN (Q8EXA3), SPEE2_PSEAE (Q9HV34), SPEE2_STRCO (Q9X8S2), 
SPEE_AERPE  (Q9YE02), SPEE_ALKEH  (Q0ACK7), SPEE_ALKMQ  (A6TRI3), 
SPEE_ARCFU  (O27950), SPEE_BACC1  (Q72X78), SPEE_BACCN  (A7GVB2), 
SPEE_BACHD  (Q9K6B8), SPEE_BACSK  (Q5WB31), SPEE_BACSU  (P70998), 
SPEE_BACWK  (A9VSG3), SPEE_BUCA5  (B8D908), SPEE_BUCAI  (P57305), 
SPEE_BUCAP  (Q8K9T5), SPEE_BUCAT  (B8D7B3), SPEE_CALBD  (B9MRW0), 
SPEE_CALS8  (A4XKM9), SPEE_CITK8  (A8ALG8), SPEE_CLOK1  (B9E5S1), 
SPEE_CLOK5  (A5N219), SPEE_CLOTE  (Q891W4), SPEE_CLOTH  (A3DDA0), 
SPEE_COREF  (Q8FMF7), SPEE_DESAP  (B1I5Z0), SPEE_DICDI  (Q9XY92), 
SPEE_ECO24  (A7ZHL0), SPEE_ECO27  (B7UIG9), SPEE_ECO45  (B7MBA4), 
SPEE_ECO55  (B7LFY8), SPEE_ECO57  (P66834), SPEE_ECO5E  (B5YZF6), 
SPEE_ECO7I  (B7NI81), SPEE_ECO81  (B7MNY3), SPEE_ECO8A  (B7M162), 
SPEE_ECOBW  (C4ZRL4), SPEE_ECODH  (B1XC96), SPEE_ECOHS  (A7ZW70), 
SPEE_ECOK1  (A1A7G7), SPEE_ECOL5  (Q0TLL3), SPEE_ECOL6  (P66833), 
SPEE_ECOLC  (B1IQL9), SPEE_ECOLI  (P09158), SPEE_ECOLU  (B7N7Z1), 
SPEE_ECOSE  (B6HZ96), SPEE_ECOSM  (B1LGS2), SPEE_ECOUT  (Q1RG70), 
SPEE_ENT38  (A4W6M6), SPEE_ERWT9  (B2VD21), SPEE_ESCF3  (B7LVY5), 
SPEE_EUBR3  (C4ZDU4), SPEE_HALHL  (A1WZR2), SPEE_HAMD5  (C4K3X3), 
SPEE_HUMAN  (P19623), SPEE_HYDS0  (B4U8W2), SPEE_KLEP3  (B5Y1R1), 
SPEE_KLEP7  (A6T4R6), SPEE_KORCO  (B1L5H2), SPEE_LEPBA  (B0SI93), 
SPEE_LEPBP  (B0STV8), SPEE_LEPIC  (Q72V65), SPEE_METJA  (Q57761), 
SPEE_MOOTA  (Q2RHH3), SPEE_MOUSE  (Q64674), SPEE_MYCBO  (Q7TY95), 
SPEE_MYCTO  (P9WGE4), SPEE_MYCTU  (P9WGE5), SPEE_NEUCR  (Q9Y8H7), 
SPEE_NITOC  (Q3JDL8), SPEE_OCEIH  (Q8CV14), SPEE_PECAS  (Q6D1W4), 
SPEE_PECCP  (C6DC58), SPEE_PEPD6  (Q18A85), SPEE_PHOLL  (Q7N892), 
SPEE_PROM0  (A3PFH4), SPEE_PROM1  (A2C5F4), SPEE_PROM2  (A8G7J0), 
SPEE_PROM3  (A2CDX0), SPEE_PROM5  (A2BZ72), SPEE_PROM9  (Q317V6), 
SPEE_PROMA  (Q7V9I5), SPEE_PROMM  (Q7V3X3), SPEE_PROMP  (Q7UZI0), 
SPEE_PROMS  (A2BTR7), SPEE_PROMT  (Q46IA2), SPEE_PSESM  (Q884N3), 
SPEE_PYRAB  (Q9V277), SPEE_PYRAE  (Q8ZXM4), SPEE_PYRAR  (A4WHN0), 
SPEE_PYRCJ  (A3MU81), SPEE_PYRFU  (Q8U4G1), SPEE_PYRHO  (O57950), 
SPEE_PYRIL  (A1RU43), SPEE_PYRNV  (B1YB61), SPEE_RHOBA  (Q7UWD1), 
SPEE_RUEST  (Q1GGU4), SPEE_SALA4  (B5F815), SPEE_SALAR  (A9MPN3), 
SPEE_SALCH  (Q57T89), SPEE_SALDC  (B5FIB4), SPEE_SALEP  (B5R2R5), 
SPEE_SALG2  (B5RHA5), SPEE_SALHS  (B4TJD2), SPEE_SALNS  (B4SU91), 
SPEE_SALPA  (Q5PDA0), SPEE_SALPB  (A9MZR2), SPEE_SALPC  (C0Q5M7), 
SPEE_SALPK  (B5BL97), SPEE_SALSV  (B4TXL7), SPEE_SALTI  (Q8Z9E2), 
SPEE_SALTY  (Q8ZRS3), SPEE_SCHPO  (Q09741), SPEE_SERP5  (A8GJ06), 
SPEE_SHIB3  (B2U2X0), SPEE_SHIBS  (Q326B5), SPEE_SHIDS  (Q32K90), 
SPEE_SHIF8  (Q0T879), SPEE_SHIFL  (Q83MF0), SPEE_SHISS  (Q3Z5N9), 
SPEE_SODGM  (Q2NVS1), SPEE_STRAW  (Q82EU4), SPEE_STRM5  (B4SM23), 
SPEE_STRMK  (B2FKR1), SPEE_SULAC  (Q4JAZ8), SPEE_SULIA  (C3N5P4), 
SPEE_SULIK  (C4KHC0), SPEE_SULIL  (C3MQ26), SPEE_SULIM  (C3MVE5), 
SPEE_SULIN  (C3NHE1), SPEE_SULIY  (C3NEA8), SPEE_SULSO  (Q9UXE4), 
SPEE_SULTO  (Q975S5), SPEE_SYNE7  (Q31QK9), SPEE_SYNP6  (Q5N3N4), 
SPEE_SYNPX  (Q7U3L0), SPEE_SYNS3  (Q0I685), SPEE_THEKO  (Q5JFG9), 
SPEE_THEMA  (Q9WZC2), SPEE_THENN  (B9KAY3), SPEE_THEON  (B6YXJ9), 
SPEE_THEP1  (A5IJD3), SPEE_THEP3  (B0K9I5), SPEE_THEPX  (B0K172), 
SPEE_THET2  (Q72K55), SPEE_THET8  (Q5SK28), SPEE_THISH  (B8GQ45), 
SPEE_XANAC  (Q8PFQ4), SPEE_XANC5  (Q3BN93), SPEE_XANC8  (Q4UPN0), 
SPEE_XANCB  (B0RXN7), SPEE_XANCP  (Q8P447), SPEE_XANOM  (Q2P928), 
SPEE_XANOP  (B2SHF6), SPEE_XANOR  (Q5H6E7), SPEE_XYLF2  (B2I6M0), 
SPEE_XYLFA  (Q9PH03), SPEE_XYLFM  (B0U1H5), SPEE_XYLFT  (Q87F26), 
SPEE_YEAST  (Q12074), SPEE_YERE8  (A1JJM8), SPEE_YERP3  (A7FM33), 
SPEE_YERPA  (Q1C3U7), SPEE_YERPB  (B2K4I2), SPEE_YERPE  (Q8ZBJ8), 
SPEE_YERPG  (A9R1H4), SPEE_YERPN  (Q1CLX1), SPEE_YERPP  (A4TPU4), 
SPEE_YERPS  (Q66EH3), SPEE_YERPY  (B1JK45), SPSY_ARATH  (Q94BN2), 
SPSY_BOVIN  (Q3SZA5), SPSY_HUMAN  (P52788), SPSY_MOUSE  (P97355), 
SPSY_YEAST  (Q12455)
» More

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

ACL5_ARATH  (Q9S7X6), SPEE1_RALSO (Q8XQC8), SPEE1_STRCO (Q9L091), 
SPEE2_CALS4 (Q8R977), SPEE2_RALSO (Q8XQC5), SPEE_ALKOO  (A8MLM9), 
SPEE_BIFLO  (Q8G4L4), SPEE_CHRVO  (Q7NQK7), SPEE_CLOAB  (Q97FX3), 
SPEE_CLOB8  (A6M1N9), SPEE_CLOBA  (B2V328), SPEE_CLOBB  (B2TMY2), 
SPEE_CLOP1  (Q0TTQ7), SPEE_CLOPE  (Q8XMY8), SPEE_CLOPH  (A9KQ99), 
SPEE_CLOPS  (Q0SVK7), SPEE_EUBE2  (C4Z1Q7), SPEE_HELAH  (Q17WL9), 
SPEE_HELP2  (B6JM63), SPEE_HELPG  (B5Z7J7), SPEE_HELPH  (Q1CT37), 
SPEE_HELPJ  (Q9ZL11), SPEE_HELPS  (B2USZ6), SPEE_HELPY  (O25503), 
SPEE_METCA  (Q606H1), SPEE_NEIMA  (P60593), SPEE_NEIMB  (P60594), 
SPEE_NITEU  (Q82XD4), SPEE_PICTO  (Q6L1F4), SPEE_SHEON  (Q8EAX8), 
SPEE_STRPN  (P66835), SPEE_STRR6  (P66836), SPEE_STRU0  (B9DUY3), 
SPEE_SYNJA  (Q2JQS1), SPEE_SYNJB  (Q2JQ57), SPEE_THEAC  (Q9HL75), 
SPEE_THEVO  (Q97BN7), SPEE_VIBVU  (Q8D3Q3), SPEE_VIBVY  (Q7MF74), 
SPEE_WOLSU  (Q7M7Q6)
» More

PDB
[Detailed view]
18 PDB

1INL; 1IY9; 1JQ3; 1MJF; 1UIR; 1XJ5; 2E5W; 2O05; 2O06; 2O07; 2O0L; 2Q41; 2ZSU; 3ANX; 3C6K; 3C6M; 3O4F; 3RW9
» More

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