Entry: PS01330

General information about the entry

Entry name [info] PABS_1
Accession [info] PS01330
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); APR-2006 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC01033

Name and characterization of the entry

Description [info] Polyamine biosynthesis (PABS) domain signature.
Pattern [info]
[VAI]-[LAV]-[LIV](2)-G-G-G-x-[GC]-x(2)-[LIVA]-x-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 202 in 202 different sequences
Number of true positive hits 202 in 202 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 83.47 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
202 sequences

PMT1_TOBAC  (Q42963    ), PMT2_TOBAC  (Q9SEH7    ), PMT3_TOBAC  (Q9SEH5    ), 
PMT4_TOBAC  (Q9SEH4    ), SPD1_ARATH  (Q9ZUB3    ), SPD1_DATST  (Q96556    ), 
SPD1_HYONI  (O48658    ), SPD1_ORYSJ  (Q9SMB1    ), SPD1_PEA    (Q9ZTR1    ), 
SPD2_ARATH  (O48661    ), SPD2_DATST  (Q96557    ), SPD2_HYONI  (O48659    ), 
SPD2_PEA    (Q9ZTR0    ), SPDE_COFAR  (O82147    ), SPDE_NICSY  (O48660    ), 
SPDE_SOLLC  (Q9ZS45    ), SPEE1_AQUAE (O66473    ), SPEE1_BACAN (Q81JT0    ), 
SPEE1_BACCR (Q814Q1    ), SPEE1_CALS4 (Q8RA94    ), SPEE1_HYPBU (A2BIX4    ), 
SPEE1_LEPIN (Q8EZP1    ), SPEE1_PSEAE (Q9X6R0    ), SPEE2_AQUAE (O67365    ), 
SPEE2_BACAN (Q81X05    ), SPEE2_BACCR (Q815E8    ), SPEE2_HYPBU (A2BJU2    ), 
SPEE2_LEPIN (Q8EXA3    ), SPEE2_PSEAE (Q9HV34    ), SPEE2_STRCO (Q9X8S2    ), 
SPEE_AERPE  (Q9YE02    ), SPEE_AGARV  (C4ZDU4    ), SPEE_ALKEH  (Q0ACK7    ), 
SPEE_ALKMQ  (A6TRI3    ), SPEE_ARCFU  (O27950    ), SPEE_BACC1  (Q72X78    ), 
SPEE_BACCN  (A7GVB2    ), SPEE_BACHD  (Q9K6B8    ), SPEE_BACSK  (Q5WB31    ), 
SPEE_BACSU  (P70998    ), SPEE_BACWK  (A9VSG3    ), SPEE_BUCA5  (B8D908    ), 
SPEE_BUCAI  (P57305    ), SPEE_BUCAP  (Q8K9T5    ), SPEE_BUCAT  (B8D7B3    ), 
SPEE_CALBD  (B9MRW0    ), SPEE_CALS8  (A4XKM9    ), SPEE_CITK8  (A8ALG8    ), 
SPEE_CLOK1  (B9E5S1    ), SPEE_CLOK5  (A5N219    ), SPEE_CLOTE  (Q891W4    ), 
SPEE_CLOTH  (A3DDA0    ), SPEE_COREF  (Q8FMF7    ), SPEE_DESAP  (B1I5Z0    ), 
SPEE_DICDI  (Q9XY92    ), SPEE_ECO24  (A7ZHL0    ), SPEE_ECO27  (B7UIG9    ), 
SPEE_ECO45  (B7MBA4    ), SPEE_ECO55  (B7LFY8    ), SPEE_ECO57  (P66834    ), 
SPEE_ECO5E  (B5YZF6    ), SPEE_ECO7I  (B7NI81    ), SPEE_ECO81  (B7MNY3    ), 
SPEE_ECO8A  (B7M162    ), SPEE_ECOBW  (C4ZRL4    ), SPEE_ECODH  (B1XC96    ), 
SPEE_ECOHS  (A7ZW70    ), SPEE_ECOK1  (A1A7G7    ), SPEE_ECOL5  (Q0TLL3    ), 
SPEE_ECOL6  (P66833    ), SPEE_ECOLC  (B1IQL9    ), SPEE_ECOLI  (P09158    ), 
SPEE_ECOLU  (B7N7Z1    ), SPEE_ECOSE  (B6HZ96    ), SPEE_ECOSM  (B1LGS2    ), 
SPEE_ECOUT  (Q1RG70    ), SPEE_ENT38  (A4W6M6    ), SPEE_ERWT9  (B2VD21    ), 
SPEE_ESCF3  (B7LVY5    ), SPEE_HALHL  (A1WZR2    ), SPEE_HAMD5  (C4K3X3    ), 
SPEE_HUMAN  (P19623    ), SPEE_HYDS0  (B4U8W2    ), SPEE_KLEP3  (B5Y1R1    ), 
SPEE_KLEP7  (A6T4R6    ), SPEE_KORCO  (B1L5H2    ), SPEE_LEPBA  (B0SI93    ), 
SPEE_LEPBP  (B0STV8    ), SPEE_LEPIC  (Q72V65    ), SPEE_METJA  (Q57761    ), 
SPEE_MOOTA  (Q2RHH3    ), SPEE_MOUSE  (Q64674    ), SPEE_MYCBO  (Q7TY95    ), 
SPEE_MYCTO  (P9WGE4    ), SPEE_MYCTU  (P9WGE5    ), SPEE_NEUCR  (Q9Y8H7    ), 
SPEE_NITOC  (Q3JDL8    ), SPEE_OCEIH  (Q8CV14    ), SPEE_PECAS  (Q6D1W4    ), 
SPEE_PECCP  (C6DC58    ), SPEE_PEPD6  (Q18A85    ), SPEE_PHOLL  (Q7N892    ), 
SPEE_PROM0  (A3PFH4    ), SPEE_PROM1  (A2C5F4    ), SPEE_PROM2  (A8G7J0    ), 
SPEE_PROM3  (A2CDX0    ), SPEE_PROM5  (A2BZ72    ), SPEE_PROM9  (Q317V6    ), 
SPEE_PROMA  (Q7V9I5    ), SPEE_PROMM  (Q7V3X3    ), SPEE_PROMP  (Q7UZI0    ), 
SPEE_PROMS  (A2BTR7    ), SPEE_PROMT  (Q46IA2    ), SPEE_PSESM  (Q884N3    ), 
SPEE_PYRAB  (Q9V277    ), SPEE_PYRAE  (Q8ZXM4    ), SPEE_PYRAR  (A4WHN0    ), 
SPEE_PYRCJ  (A3MU81    ), SPEE_PYRFU  (Q8U4G1    ), SPEE_PYRHO  (O57950    ), 
SPEE_PYRIL  (A1RU43    ), SPEE_PYRNV  (B1YB61    ), SPEE_RHOBA  (Q7UWD1    ), 
SPEE_RUEST  (Q1GGU4    ), SPEE_SALA4  (B5F815    ), SPEE_SALAR  (A9MPN3    ), 
SPEE_SALCH  (Q57T89    ), SPEE_SALDC  (B5FIB4    ), SPEE_SALEP  (B5R2R5    ), 
SPEE_SALG2  (B5RHA5    ), SPEE_SALHS  (B4TJD2    ), SPEE_SALNS  (B4SU91    ), 
SPEE_SALPA  (Q5PDA0    ), SPEE_SALPB  (A9MZR2    ), SPEE_SALPC  (C0Q5M7    ), 
SPEE_SALPK  (B5BL97    ), SPEE_SALSV  (B4TXL7    ), SPEE_SALTI  (Q8Z9E2    ), 
SPEE_SALTY  (Q8ZRS3    ), SPEE_SCHPO  (Q09741    ), SPEE_SERP5  (A8GJ06    ), 
SPEE_SHIB3  (B2U2X0    ), SPEE_SHIBS  (Q326B5    ), SPEE_SHIDS  (Q32K90    ), 
SPEE_SHIF8  (Q0T879    ), SPEE_SHIFL  (Q83MF0    ), SPEE_SHISS  (Q3Z5N9    ), 
SPEE_SODGM  (Q2NVS1    ), SPEE_STRAW  (Q82EU4    ), SPEE_STRM5  (B4SM23    ), 
SPEE_STRMK  (B2FKR1    ), SPEE_SULAC  (Q4JAZ8    ), SPEE_SULIA  (C3N5P4    ), 
SPEE_SULIK  (C4KHC0    ), SPEE_SULIL  (C3MQ26    ), SPEE_SULIM  (C3MVE5    ), 
SPEE_SULIN  (C3NHE1    ), SPEE_SULIY  (C3NEA8    ), SPEE_SULSO  (Q9UXE4    ), 
SPEE_SULTO  (Q975S5    ), SPEE_SYNE7  (Q31QK9    ), SPEE_SYNP6  (Q5N3N4    ), 
SPEE_SYNPX  (Q7U3L0    ), SPEE_SYNS3  (Q0I685    ), SPEE_THEKO  (Q5JFG9    ), 
SPEE_THEMA  (Q9WZC2    ), SPEE_THENN  (B9KAY3    ), SPEE_THEON  (B6YXJ9    ), 
SPEE_THEP1  (A5IJD3    ), SPEE_THEP3  (B0K9I5    ), SPEE_THEPX  (B0K172    ), 
SPEE_THET2  (Q72K55    ), SPEE_THET8  (Q5SK28    ), SPEE_THISH  (B8GQ45    ), 
SPEE_XANAC  (Q8PFQ4    ), SPEE_XANC5  (Q3BN93    ), SPEE_XANC8  (Q4UPN0    ), 
SPEE_XANCB  (B0RXN7    ), SPEE_XANCP  (Q8P447    ), SPEE_XANOM  (Q2P928    ), 
SPEE_XANOP  (B2SHF6    ), SPEE_XANOR  (Q5H6E7    ), SPEE_XYLF2  (B2I6M0    ), 
SPEE_XYLFA  (Q9PH03    ), SPEE_XYLFM  (B0U1H5    ), SPEE_XYLFT  (Q87F26    ), 
SPEE_YEAST  (Q12074    ), SPEE_YERE8  (A1JJM8    ), SPEE_YERP3  (A7FM33    ), 
SPEE_YERPA  (Q1C3U7    ), SPEE_YERPB  (B2K4I2    ), SPEE_YERPE  (Q8ZBJ8    ), 
SPEE_YERPG  (A9R1H4    ), SPEE_YERPN  (Q1CLX1    ), SPEE_YERPP  (A4TPU4    ), 
SPEE_YERPS  (Q66EH3    ), SPEE_YERPY  (B1JK45    ), SPSY_ARATH  (Q94BN2    ), 
SPSY_BOVIN  (Q3SZA5    ), SPSY_HUMAN  (P52788    ), SPSY_MOUSE  (P97355    ), 
SPSY_YEAST  (Q12455    )
» more

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

ACL5_ARATH  (Q9S7X6    ), SPEE1_RALSO (Q8XQC8    ), SPEE1_STRCO (Q9L091    ), 
SPEE2_CALS4 (Q8R977    ), SPEE2_RALSO (Q8XQC5    ), SPEE_ALKOO  (A8MLM9    ), 
SPEE_BIFLO  (Q8G4L4    ), SPEE_CHRVO  (Q7NQK7    ), SPEE_CLOAB  (Q97FX3    ), 
SPEE_CLOB8  (A6M1N9    ), SPEE_CLOBA  (B2V328    ), SPEE_CLOBB  (B2TMY2    ), 
SPEE_CLOP1  (Q0TTQ7    ), SPEE_CLOPE  (Q8XMY8    ), SPEE_CLOPH  (A9KQ99    ), 
SPEE_CLOPS  (Q0SVK7    ), SPEE_EUBE2  (C4Z1Q7    ), SPEE_HELAH  (Q17WL9    ), 
SPEE_HELP2  (B6JM63    ), SPEE_HELPG  (B5Z7J7    ), SPEE_HELPH  (Q1CT37    ), 
SPEE_HELPJ  (Q9ZL11    ), SPEE_HELPS  (B2USZ6    ), SPEE_HELPY  (O25503    ), 
SPEE_METCA  (Q606H1    ), SPEE_NEIMA  (P60593    ), SPEE_NEIMB  (P60594    ), 
SPEE_NITEU  (Q82XD4    ), SPEE_PICTO  (Q6L1F4    ), SPEE_SHEON  (Q8EAX8    ), 
SPEE_STRPN  (P66835    ), SPEE_STRR6  (P66836    ), SPEE_STRU0  (B9DUY3    ), 
SPEE_SYNJA  (Q2JQS1    ), SPEE_SYNJB  (Q2JQ57    ), SPEE_THEAC  (Q9HL75    ), 
SPEE_THEVO  (Q97BN7    ), SPEE_VIBVU  (Q8D3Q3    ), SPEE_VIBVY  (Q7MF74    ), 
SPEE_WOLSU  (Q7M7Q6    )
» more

PDB
[Detailed view]
18 PDB

1INL; 1IY9; 1JQ3; 1MJF; 1UIR; 1XJ5; 2E5W; 2O05; 2O06; 2O07; 2O0L; 2Q41; 2ZSU; 3ANX; 3C6K; 3C6M; 3O4F; 3RW9
» more

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