Entry: PS01330

General information about the entry

Entry name [info] PABS_1
Accession [info] PS01330
Entry type [info] PATTERN
Date [info] JUL-1999 (CREATED); APR-2006 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC01033

Name and characterization of the entry

Description [info] Polyamine biosynthesis (PABS) domain signature.
Pattern [info]
[VAI]-[LAV]-[LIV](2)-G-G-G-x-[GC]-x(2)-[LIVA]-x-E.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 202 in 202 different sequences
Number of true positive hits 202 in 202 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 83.47 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
202 sequences

PMT1_TOBAC  (Q42963), PMT2_TOBAC  (Q9SEH7), PMT3_TOBAC  (Q9SEH5), 
PMT4_TOBAC  (Q9SEH4), SPD1_ARATH  (Q9ZUB3), SPD1_DATST  (Q96556), 
SPD1_HYONI  (O48658), SPD1_ORYSJ  (Q9SMB1), SPD1_PEA    (Q9ZTR1), 
SPD2_ARATH  (O48661), SPD2_DATST  (Q96557), SPD2_HYONI  (O48659), 
SPD2_PEA    (Q9ZTR0), SPDE_COFAR  (O82147), SPDE_NICSY  (O48660), 
SPDE_SOLLC  (Q9ZS45), SPEE1_AQUAE (O66473), SPEE1_BACAN (Q81JT0), 
SPEE1_BACCR (Q814Q1), SPEE1_CALS4 (Q8RA94), SPEE1_HYPBU (A2BIX4), 
SPEE1_LEPIN (Q8EZP1), SPEE1_PSEAE (Q9X6R0), SPEE2_AQUAE (O67365), 
SPEE2_BACAN (Q81X05), SPEE2_BACCR (Q815E8), SPEE2_HYPBU (A2BJU2), 
SPEE2_LEPIN (Q8EXA3), SPEE2_PSEAE (Q9HV34), SPEE2_STRCO (Q9X8S2), 
SPEE_AERPE  (Q9YE02), SPEE_ALKEH  (Q0ACK7), SPEE_ALKMQ  (A6TRI3), 
SPEE_ARCFU  (O27950), SPEE_BACC1  (Q72X78), SPEE_BACCN  (A7GVB2), 
SPEE_BACHD  (Q9K6B8), SPEE_BACSK  (Q5WB31), SPEE_BACSU  (P70998), 
SPEE_BACWK  (A9VSG3), SPEE_BUCA5  (B8D908), SPEE_BUCAI  (P57305), 
SPEE_BUCAP  (Q8K9T5), SPEE_BUCAT  (B8D7B3), SPEE_CALBD  (B9MRW0), 
SPEE_CALS8  (A4XKM9), SPEE_CITK8  (A8ALG8), SPEE_CLOK1  (B9E5S1), 
SPEE_CLOK5  (A5N219), SPEE_CLOTE  (Q891W4), SPEE_CLOTH  (A3DDA0), 
SPEE_COREF  (Q8FMF7), SPEE_DESAP  (B1I5Z0), SPEE_DICDI  (Q9XY92), 
SPEE_ECO24  (A7ZHL0), SPEE_ECO27  (B7UIG9), SPEE_ECO45  (B7MBA4), 
SPEE_ECO55  (B7LFY8), SPEE_ECO57  (P66834), SPEE_ECO5E  (B5YZF6), 
SPEE_ECO7I  (B7NI81), SPEE_ECO81  (B7MNY3), SPEE_ECO8A  (B7M162), 
SPEE_ECOBW  (C4ZRL4), SPEE_ECODH  (B1XC96), SPEE_ECOHS  (A7ZW70), 
SPEE_ECOK1  (A1A7G7), SPEE_ECOL5  (Q0TLL3), SPEE_ECOL6  (P66833), 
SPEE_ECOLC  (B1IQL9), SPEE_ECOLI  (P09158), SPEE_ECOLU  (B7N7Z1), 
SPEE_ECOSE  (B6HZ96), SPEE_ECOSM  (B1LGS2), SPEE_ECOUT  (Q1RG70), 
SPEE_ENT38  (A4W6M6), SPEE_ERWT9  (B2VD21), SPEE_ESCF3  (B7LVY5), 
SPEE_EUBR3  (C4ZDU4), SPEE_HALHL  (A1WZR2), SPEE_HAMD5  (C4K3X3), 
SPEE_HUMAN  (P19623), SPEE_HYDS0  (B4U8W2), SPEE_KLEP3  (B5Y1R1), 
SPEE_KLEP7  (A6T4R6), SPEE_KORCO  (B1L5H2), SPEE_LEPBA  (B0SI93), 
SPEE_LEPBP  (B0STV8), SPEE_LEPIC  (Q72V65), SPEE_METJA  (Q57761), 
SPEE_MOOTA  (Q2RHH3), SPEE_MOUSE  (Q64674), SPEE_MYCBO  (Q7TY95), 
SPEE_MYCTO  (P9WGE4), SPEE_MYCTU  (P9WGE5), SPEE_NEUCR  (Q9Y8H7), 
SPEE_NITOC  (Q3JDL8), SPEE_OCEIH  (Q8CV14), SPEE_PECAS  (Q6D1W4), 
SPEE_PECCP  (C6DC58), SPEE_PEPD6  (Q18A85), SPEE_PHOLL  (Q7N892), 
SPEE_PROM0  (A3PFH4), SPEE_PROM1  (A2C5F4), SPEE_PROM2  (A8G7J0), 
SPEE_PROM3  (A2CDX0), SPEE_PROM5  (A2BZ72), SPEE_PROM9  (Q317V6), 
SPEE_PROMA  (Q7V9I5), SPEE_PROMM  (Q7V3X3), SPEE_PROMP  (Q7UZI0), 
SPEE_PROMS  (A2BTR7), SPEE_PROMT  (Q46IA2), SPEE_PSESM  (Q884N3), 
SPEE_PYRAB  (Q9V277), SPEE_PYRAE  (Q8ZXM4), SPEE_PYRAR  (A4WHN0), 
SPEE_PYRCJ  (A3MU81), SPEE_PYRFU  (Q8U4G1), SPEE_PYRHO  (O57950), 
SPEE_PYRIL  (A1RU43), SPEE_PYRNV  (B1YB61), SPEE_RHOBA  (Q7UWD1), 
SPEE_RUEST  (Q1GGU4), SPEE_SALA4  (B5F815), SPEE_SALAR  (A9MPN3), 
SPEE_SALCH  (Q57T89), SPEE_SALDC  (B5FIB4), SPEE_SALEP  (B5R2R5), 
SPEE_SALG2  (B5RHA5), SPEE_SALHS  (B4TJD2), SPEE_SALNS  (B4SU91), 
SPEE_SALPA  (Q5PDA0), SPEE_SALPB  (A9MZR2), SPEE_SALPC  (C0Q5M7), 
SPEE_SALPK  (B5BL97), SPEE_SALSV  (B4TXL7), SPEE_SALTI  (Q8Z9E2), 
SPEE_SALTY  (Q8ZRS3), SPEE_SCHPO  (Q09741), SPEE_SERP5  (A8GJ06), 
SPEE_SHIB3  (B2U2X0), SPEE_SHIBS  (Q326B5), SPEE_SHIDS  (Q32K90), 
SPEE_SHIF8  (Q0T879), SPEE_SHIFL  (Q83MF0), SPEE_SHISS  (Q3Z5N9), 
SPEE_SODGM  (Q2NVS1), SPEE_STRAW  (Q82EU4), SPEE_STRM5  (B4SM23), 
SPEE_STRMK  (B2FKR1), SPEE_SULAC  (Q4JAZ8), SPEE_SULIA  (C3N5P4), 
SPEE_SULIK  (C4KHC0), SPEE_SULIL  (C3MQ26), SPEE_SULIM  (C3MVE5), 
SPEE_SULIN  (C3NHE1), SPEE_SULIY  (C3NEA8), SPEE_SULSO  (Q9UXE4), 
SPEE_SULTO  (Q975S5), SPEE_SYNE7  (Q31QK9), SPEE_SYNP6  (Q5N3N4), 
SPEE_SYNPX  (Q7U3L0), SPEE_SYNS3  (Q0I685), SPEE_THEKO  (Q5JFG9), 
SPEE_THEMA  (Q9WZC2), SPEE_THENN  (B9KAY3), SPEE_THEON  (B6YXJ9), 
SPEE_THEP1  (A5IJD3), SPEE_THEP3  (B0K9I5), SPEE_THEPX  (B0K172), 
SPEE_THET2  (Q72K55), SPEE_THET8  (Q5SK28), SPEE_THISH  (B8GQ45), 
SPEE_XANAC  (Q8PFQ4), SPEE_XANC5  (Q3BN93), SPEE_XANC8  (Q4UPN0), 
SPEE_XANCB  (B0RXN7), SPEE_XANCP  (Q8P447), SPEE_XANOM  (Q2P928), 
SPEE_XANOP  (B2SHF6), SPEE_XANOR  (Q5H6E7), SPEE_XYLF2  (B2I6M0), 
SPEE_XYLFA  (Q9PH03), SPEE_XYLFM  (B0U1H5), SPEE_XYLFT  (Q87F26), 
SPEE_YEAST  (Q12074), SPEE_YERE8  (A1JJM8), SPEE_YERP3  (A7FM33), 
SPEE_YERPA  (Q1C3U7), SPEE_YERPB  (B2K4I2), SPEE_YERPE  (Q8ZBJ8), 
SPEE_YERPG  (A9R1H4), SPEE_YERPN  (Q1CLX1), SPEE_YERPP  (A4TPU4), 
SPEE_YERPS  (Q66EH3), SPEE_YERPY  (B1JK45), SPSY_ARATH  (Q94BN2), 
SPSY_BOVIN  (Q3SZA5), SPSY_HUMAN  (P52788), SPSY_MOUSE  (P97355), 
SPSY_YEAST  (Q12455)
» More

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

ACL5_ARATH  (Q9S7X6), SPEE1_RALSO (Q8XQC8), SPEE1_STRCO (Q9L091), 
SPEE2_CALS4 (Q8R977), SPEE2_RALSO (Q8XQC5), SPEE_ALKOO  (A8MLM9), 
SPEE_BIFLO  (Q8G4L4), SPEE_CHRVO  (Q7NQK7), SPEE_CLOAB  (Q97FX3), 
SPEE_CLOB8  (A6M1N9), SPEE_CLOBA  (B2V328), SPEE_CLOBB  (B2TMY2), 
SPEE_CLOP1  (Q0TTQ7), SPEE_CLOPE  (Q8XMY8), SPEE_CLOPH  (A9KQ99), 
SPEE_CLOPS  (Q0SVK7), SPEE_EUBE2  (C4Z1Q7), SPEE_HELAH  (Q17WL9), 
SPEE_HELP2  (B6JM63), SPEE_HELPG  (B5Z7J7), SPEE_HELPH  (Q1CT37), 
SPEE_HELPJ  (Q9ZL11), SPEE_HELPS  (B2USZ6), SPEE_HELPY  (O25503), 
SPEE_METCA  (Q606H1), SPEE_NEIMA  (P60593), SPEE_NEIMB  (P60594), 
SPEE_NITEU  (Q82XD4), SPEE_PICTO  (Q6L1F4), SPEE_SHEON  (Q8EAX8), 
SPEE_STRPN  (P66835), SPEE_STRR6  (P66836), SPEE_STRU0  (B9DUY3), 
SPEE_SYNJA  (Q2JQS1), SPEE_SYNJB  (Q2JQ57), SPEE_THEAC  (Q9HL75), 
SPEE_THEVO  (Q97BN7), SPEE_VIBVU  (Q8D3Q3), SPEE_VIBVY  (Q7MF74), 
SPEE_WOLSU  (Q7M7Q6)
» More

PDB
[Detailed view]
18 PDB

1INL; 1IY9; 1JQ3; 1MJF; 1UIR; 1XJ5; 2E5W; 2O05; 2O06; 2O07; 2O0L; 2Q41; 2ZSU; 3ANX; 3C6K; 3C6M; 3O4F; 3RW9
» More

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