Entry: PS01358

General information about the entry
Entry name ZF_RANBP2_1
Accession number PS01358
Entry type PATTERN
Date DEC-2001 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC50199
Name and characterization of the entry
DescriptionZinc finger RanBP2-type signature.
Pattern W-x-C-x(2,4)-C-x(3)-N-x(6)-C-x(2)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 169 hits in 101 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 169 hits in 101 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 98.26 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 8
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ARI13_ARATH (Q9FFN9), ARI14_ARATH (Q9FFP1), ARI15_ARATH (Q84RQ8), 
ARI16_ARATH (Q9C5A4), ARI8_ARATH  (Q8W468), CAN15_HUMAN (O75808), 
CAN15_MOUSE (Q9JLG8), CAND_DROME  (P27398), CAZ_DROME   (Q27294), 
EWS_HUMAN   (Q01844), EWS_MOUSE   (Q61545), FUS_BOVIN   (Q28009), 
FUS_HUMAN   (P35637), FUS_MOUSE   (P56959), HDA15_ARATH (Q8GXJ1), 
HOIL1_DANRE (A9JTG5), HOIL1_DICLA (E6ZIJ1), HOIL1_HUMAN (Q9BYM8), 
HOIL1_MOUSE (Q9WUB0), HOIL1_RAT   (Q62921), MDM2_CANFA  (P56950), 
MDM2_DANRE  (O42354), MDM2_FELCA  (Q7YRZ8), MDM2_HORSE  (P56951), 
MDM2_HUMAN  (Q00987), MDM2_MESAU  (Q60524), MDM2_MOUSE  (P23804), 
MDM2_XENLA  (P56273), MDM4_BOVIN  (Q2HJ21), MDM4_DANRE  (Q7ZUW7), 
MDM4_HUMAN  (O15151), MDM4_MOUSE  (O35618), MDM4_RAT    (Q5XIN1), 
MDM4_XENLA  (Q7ZYI3), NEIL3_BOVIN (Q3MHN7), NEIL3_HUMAN (Q8TAT5), 
NEIL3_MOUSE (Q8K203), NPL4_DROME  (Q9VBP9), NPL4_HUMAN  (Q8TAT6), 
NPL4_MOUSE  (P60670), NPL4_RAT    (Q9ES54), NRP1_YEAST  (P32770), 
NU153_DROME (Q9VXE6), NU153_HUMAN (P49790), NU153_RAT   (P49791), 
NU153_XENLA (Q640Z6), RBM10_HUMAN (P98175), RBM10_MOUSE (Q99KG3), 
RBM10_RAT   (P70501), RBM5A_XENLA (A0JMV4), RBM5B_XENLA (Q6DDU9), 
RBM5_BOVIN  (Q1RMU5), RBM5_HUMAN  (P52756), RBM5_MOUSE  (Q91YE7), 
RBM5_RAT    (B2GV05), RBM5_XENTR  (A4IGK4), RBP2_HUMAN  (P49792), 
RBP2_MOUSE  (Q9ERU9), RBP56_HUMAN (Q92804), RNF31_HUMAN (Q96EP0), 
RNF31_MOUSE (Q924T7), RYBPA_DANRE (Q7SYB3), RYBPB_DANRE (Q5EG55), 
RYBP_HUMAN  (Q8N488), RYBP_MOUSE  (Q8CCI5), SHRPN_BOVIN (E1BDF2), 
SHRPN_HUMAN (Q9H0F6), SHRPN_MOUSE (Q91WA6), SHRPN_RAT   (Q9EQL9), 
TAB2_DANRE  (Q5RFW2), TAB2_HUMAN  (Q9NYJ8), TAB2_MOUSE  (Q99K90), 
TAB2_RAT    (Q5U303), TAB3_HUMAN  (Q8N5C8), TAB3_MOUSE  (Q571K4), 
TAB3_XENLA  (Q7ZXH3), TAMO_DROME  (Q9W1A4), TRBID_DROME (Q9VH90), 
TX13A_HUMAN (Q9BXU3), VAR3_ARATH  (Q8S9K3), Y3761_ARATH (Q8RXW0), 
YAF2_HUMAN  (Q8IY57), YAF2_MOUSE  (Q99LW6), YDMD_SCHPO  (P87143), 
YE04_SCHPO  (O13801), ZRAB2_CHICK (Q5ZLX5), ZRAB2_HUMAN (O95218), 
ZRAB2_MOUSE (Q9R020), ZRAB2_PIG   (Q19QU3), ZRAB2_PONAB (Q5R580), 
ZRAB2_RAT   (O35986), ZRAB3_BOVIN (E1BB03), ZRAB3_HUMAN (Q5FWF4), 
ZRAB3_MOUSE (Q6NZP1), ZRAN1_BOVIN (A6QP16), ZRAN1_HUMAN (Q9UGI0), 
ZRAN1_MOUSE (Q7M760), ZRAN1_XENTR (B1H2Q2), ZRN1A_XENLA (Q5U595), 
ZRN1B_DANRE (A0JMQ9), ZRN1B_XENLA (Q6NUB7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
VPS36_SCHPO (O43038), VPS36_YEAST (Q06696), YZR3_ARATH  (Q8GZ43)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1N0Z; 1NJ3; 1Q5W; 2C6A; 2C6B; 2CR8; 2CRC; 2D9G; 2EBQ; 2EBR; 2EBV; 2GQE; 2K0C; 2K1P; 2LK0; 2LK1; 2WWZ; 2WX0; 2WX1; 3A9J; 3A9K; 3B08; 3B0A; 3CH5; 3G9Y; 3GJ3; 3GJ4; 3GJ5; 3GJ6; 3GJ7; 3GJ8;

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